Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p27420 Brassica napus HOM05D003376 ORTHO05D001185 0.0e+00 1368.2 693 100.0
A05p12450 Brassica napus HOM05D003376 ORTHO05D001185 0.0e+00 1328.5 693 97.1
A06p25220 Brassica napus HOM05D003376 ORTHO05D001185 0.0e+00 1092.0 583 95.7
AL88U10020 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 2.5e-263 912.1 709 68.7
Thhalv10028343m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.1e-255 886.7 700 67.3
AL1G57140 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 2.9e-251 872.1 707 65.5
AL8G17320 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 1.3e-248 863.2 708 66.0
AL6G42760 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 2.0e-236 822.8 704 63.8
AL88U10010 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 1.7e-235 819.7 699 64.1
AL6G37690 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 3.9e-232 808.5 704 63.1
AL8G17310 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 3.3e-231 805.4 715 62.7
Thhalv10001103m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 5.3e-229 798.1 583 71.4
Thhalv10003417m.g Eutrema salsugineum HOM05D003376 ORTHO05D000048 3.2e-226 788.9 479 81.2
BcaC06g35708 Brassica carinata HOM05D003376 ORTHO05D001185 5.0e-203 711.8 490 77.3
A04p12690 Brassica napus HOM05D003376 ORTHO05D001185 4.7e-201 705.3 498 76.9
BraA04t16927Z Brassica rapa HOM05D003376 ORTHO05D001185 4.7e-201 705.3 498 76.9
Thhalv10002934m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 8.0e-201 704.5 705 57.6
A05p12400 Brassica napus HOM05D003376 ORTHO05D001185 2.8e-169 599.7 332 93.1
Thhalv10000496m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 7.8e-164 581.6 477 65.6
BcaC09g49326 Brassica carinata HOM05D003376 ORTHO05D001185 3.1e-136 490.0 400 67.2
BcaB05g23142 Brassica carinata HOM05D003376 ORTHO05D001185 4.0e-136 489.6 397 67.3
C07p27990 Brassica napus HOM05D003376 ORTHO05D001185 2.6e-135 486.9 544 53.7
BraA06t26272Z Brassica rapa HOM05D003376 ORTHO05D001185 9.6e-130 468.4 453 62.7
BcaB04g18321 Brassica carinata HOM05D003376 ORTHO05D001185 7.9e-124 448.7 377 66.6
BcaC02g10207 Brassica carinata HOM05D003376 ORTHO05D001185 7.9e-124 448.7 358 69.8
C04p09000 Brassica napus HOM05D003376 ORTHO05D001185 5.5e-117 426.0 291 77.3
BcaB01g00899 Brassica carinata HOM05D003376 ORTHO05D001185 5.1e-115 419.5 336 67.6
A01p23930 Brassica napus HOM05D003376 ORTHO05D001185 5.7e-106 389.4 262 80.5
BraA01t02300Z Brassica rapa HOM05D003376 ORTHO05D001185 2.2e-105 387.5 262 80.2
BolC1t03750H Brassica oleracea HOM05D003376 ORTHO05D001185 2.8e-105 387.1 224 84.4
BolC1t03800H Brassica oleracea HOM05D003376 ORTHO05D001185 1.4e-101 374.8 281 72.6
BolC7t41653H Brassica oleracea HOM05D003376 ORTHO05D001185 3.3e-98 363.6 221 82.8
Thhalv10027218m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 2.0e-95 354.4 686 37.9
BolC1t03802H Brassica oleracea HOM05D003376 ORTHO05D001185 5.7e-90 336.3 187 87.7
C03p85050 Brassica napus HOM05D003376 ORTHO05D001185 2.8e-89 334.0 243 76.1
AL8G17360 Arabidopsis lyrata HOM05D003376 ORTHO05D011035 9.1e-88 328.9 261 65.1
C07p11790 Brassica napus HOM05D003376 ORTHO05D001185 8.5e-86 322.4 226 77.9
Thhalv10000705m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.2e-82 312.0 663 35.4
BcaB07g32859 Brassica carinata HOM05D003376 ORTHO05D001185 6.5e-78 296.2 287 60.6
AL8G17340 Arabidopsis lyrata HOM05D003376 ORTHO05D011035 6.1e-76 289.7 232 67.2
BolC7t43332H Brassica oleracea HOM05D003376 ORTHO05D001185 8.0e-76 289.3 381 47.8
Atru.chr7.181 Acer truncatum HOM05D005324 ORTHO05D001185 1.4e-72 278.5 539 34.5
Thhalv10028344m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.8e-72 278.1 461 36.2
Thhalv10023188m.g Eutrema salsugineum HOM05D003376 ORTHO05D000002 1.7e-70 271.6 595 31.3
AL6G41750 Arabidopsis lyrata HOM05D003376 ORTHO05D000002 1.6e-68 265.0 166 75.9
Thhalv10012231m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 2.8e-68 264.2 724 29.8
Ca_11659_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.7e-65 253.8 452 35.4
Atru.chr4.959 Acer truncatum HOM05D005324 ORTHO05D001185 1.1e-61 242.3 542 31.4
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 7.3e-61 239.6 258 57.8
Ca_14742_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 7.3e-61 239.6 719 29.9
Atru.chr4.1769 Acer truncatum HOM05D005324 ORTHO05D001185 8.9e-59 232.6 430 32.8
BolC4t22489H Brassica oleracea HOM05D003376 ORTHO05D001185 3.4e-58 230.7 183 69.9
Thhalv10002230m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.7e-57 228.4 444 34.0
A09p25430 Brassica napus HOM05D003376 ORTHO05D001185 1.3e-54 218.8 114 96.5
Ca_14156_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 9.5e-53 212.6 446 32.5
Ca_22549_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 9.5e-53 212.6 530 31.3
C01p37900 Brassica napus HOM05D003376 ORTHO05D001185 1.6e-52 211.8 222 58.1
BolC1t03751H Brassica oleracea HOM05D003376 ORTHO05D001185 1.6e-52 211.8 222 58.1
Lj2g0007658 Lotus japonicus HOM05D005324 ORTHO05D001185 8.9e-51 206.1 577 27.4
Glyma.19G076000 Glycine max HOM05D005324 ORTHO05D001185 3.4e-50 204.1 494 30.6
HanXRQChr10g0281981 Helianthus annuus HOM05D003376 ORTHO05D001185 8.3e-49 199.5 567 31.6
Ca_25846_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.1e-48 199.1 487 30.6
Lj6g0018849 Lotus japonicus HOM05D005324 ORTHO05D001185 1.4e-48 198.7 521 29.6
Lj4g0014350 Lotus japonicus HOM05D005324 ORTHO05D001185 9.2e-48 196.1 512 27.1
HanXRQChr09g0262521 Helianthus annuus HOM05D003376 ORTHO05D001185 1.6e-47 195.3 608 31.1
HanXRQChr09g0262541 Helianthus annuus HOM05D003326 ORTHO05D001185 1.6e-47 195.3 587 30.3
HanXRQChr09g0262491 Helianthus annuus HOM05D003376 ORTHO05D001185 2.7e-47 194.5 587 30.3
HanXRQChr09g0262531 Helianthus annuus HOM05D003376 ORTHO05D001185 3.5e-47 194.1 552 31.0
Cc00_g34090 Coffea canephora HOM05D005324 ORTHO05D001185 1.7e-46 191.8 568 28.7
HanXRQChr09g0267851 Helianthus annuus HOM05D003376 ORTHO05D001185 3.9e-46 190.7 586 30.7
Lj3g0022640 Lotus japonicus HOM05D005324 ORTHO05D001185 3.9e-46 190.7 411 30.2
Thhalv10003477m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.2e-44 185.7 547 26.7
Lj6g0006708 Lotus japonicus HOM05D005324 ORTHO05D001185 3.6e-44 184.1 549 27.7
Thhalv10028029m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.4e-43 182.2 721 26.1
BolC4t24704H Brassica oleracea HOM05D003376 ORTHO05D001185 2.3e-43 181.4 152 66.4
Glyma.06G234900 Glycine max HOM05D005324 ORTHO05D001185 3.1e-43 181.0 520 28.3
BolC1t03801H Brassica oleracea HOM05D003376 ORTHO05D001185 1.2e-42 179.1 148 64.2
Cc00_g28290 Coffea canephora HOM05D003326 ORTHO05D001185 7.6e-42 176.4 692 27.2
Atru.chr13.2462 Acer truncatum HOM05D005324 ORTHO05D001185 1.1e-40 172.6 468 26.3
C07p11800 Brassica napus HOM05D003376 ORTHO05D001185 1.1e-40 172.6 90 92.2
BolC6t36227H Brassica oleracea HOM05D003376 ORTHO05D001185 2.4e-40 171.4 144 69.4
Atru.chr3.3306 Acer truncatum HOM05D000477 ORTHO05D001185 3.2e-40 171.0 355 32.7
COL.COLO4_29280 Corchorus olitorius HOM05D003376 ORTHO05D001185 9.2e-40 169.5 410 33.9
BcaB05g23141 Brassica carinata HOM05D003376 ORTHO05D001185 1.2e-39 169.1 115 70.4
C03p79090 Brassica napus HOM05D003376 ORTHO05D001185 2.1e-39 168.3 90 90.0
Atru.chr1.2264 Acer truncatum HOM05D005324 ORTHO05D001185 1.7e-38 165.2 425 29.9
Ca_15184_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.3e-38 164.9 317 32.8
Atru.chr10.1416 Acer truncatum HOM05D005324 ORTHO05D001185 5.1e-38 163.7 327 32.1
Ca_05672_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.9e-37 161.8 550 28.9
BolC4t23955H Brassica oleracea HOM05D003376 ORTHO05D001185 2.5e-37 161.4 110 71.8
ECA246G2607 Erigeron canadensis HOM05D003326 ORTHO05D001185 2.5e-37 161.4 460 31.3
HanXRQChr09g0262551 Helianthus annuus HOM05D003376 ORTHO05D001185 3.3e-37 161.0 466 30.7
C04p31550 Brassica napus HOM05D003376 ORTHO05D001185 4.3e-37 160.6 105 79.0
Ca_14763_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 9.6e-37 159.5 311 34.1
BraA06t26274Z Brassica rapa HOM05D003376 ORTHO05D001185 2.8e-36 157.9 84 94.0
ECA236G2821 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.7e-36 157.1 409 28.9
Ca_24116_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.8e-35 155.2 440 28.6
ECA236G2931 Erigeron canadensis HOM05D003376 ORTHO05D001185 3.1e-35 154.5 442 30.5
Lj6g0011364 Lotus japonicus HOM05D005324 ORTHO05D001185 4.4e-34 150.6 572 26.2
Atru.chr3.2329 Acer truncatum HOM05D003326 ORTHO05D001185 7.6e-34 149.8 456 27.6
ECA248G1318 Erigeron canadensis HOM05D003376 ORTHO05D001185 4.9e-33 147.1 276 35.5
Cc07_g21310 Coffea canephora HOM05D003376 ORTHO05D011089 8.4e-33 146.4 546 28.0
BcaB05g22757 Brassica carinata HOM05D003376 ORTHO05D001185 1.4e-32 145.6 123 66.7
Ca_13200_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 4.2e-32 144.1 305 28.9
Ca_29875_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 4.2e-32 144.1 305 28.9
Lj3g0011497 Lotus japonicus HOM05D005324 ORTHO05D001185 4.2e-32 144.1 192 32.3
Ca_19239_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.6e-31 142.1 330 33.9
Ca_22528_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.7e-31 141.4 728 26.6
Atru.chr5.1825 Acer truncatum HOM05D005324 ORTHO05D001185 7.8e-31 139.8 178 37.6
Atru.chr9.334 Acer truncatum HOM05D005324 ORTHO05D001185 2.3e-30 138.3 159 39.0
Ca_14697_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.1e-30 137.1 408 28.2
Cc00_g09810 Coffea canephora HOM05D003326 ORTHO05D001185 8.7e-30 136.3 257 32.7
Glyma.11G180400 Glycine max HOM05D005324 ORTHO05D001185 5.6e-29 133.7 381 28.6
Ca_24087_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 6.2e-28 130.2 183 35.5
Atru.chr9.596 Acer truncatum HOM05D005324 ORTHO05D001185 1.4e-27 129.0 347 29.7
Ca_23844_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.4e-27 128.3 321 32.7
Ca_30746_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.4e-27 128.3 321 32.7
BcaB05g24586 Brassica carinata HOM05D003376 ORTHO05D001185 4.4e-26 124.0 90 64.4
Thhalv10001272m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 9.9e-26 122.9 374 25.9
Atru.chr4.605 Acer truncatum HOM05D005324 ORTHO05D001185 8.4e-25 119.8 488 24.2
Ca_14332_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.1e-24 119.4 285 31.9
BcaB08g35327 Brassica carinata HOM05D003376 ORTHO05D001185 3.2e-24 117.9 90 62.2
BraA01t02207Z Brassica rapa HOM05D003376 ORTHO05D001185 4.6e-23 114.0 129 54.3
TAR623G0055 Trochodendron aralioides HOM05D003715 ORTHO05D003958 1.5e-21 109.0 246 32.1
C05p40810 Brassica napus HOM05D003376 ORTHO05D001185 1.9e-21 108.6 85 67.1
BolC5t32825H Brassica oleracea HOM05D003376 ORTHO05D001185 1.9e-21 108.6 85 67.1
Lj4g0024804 Lotus japonicus HOM05D005324 ORTHO05D001185 2.5e-21 108.2 129 34.9
Atru.chr1.2372 Acer truncatum HOM05D005324 ORTHO05D001185 2.8e-20 104.8 140 35.7
BcaB05g22490 Brassica carinata HOM05D003376 ORTHO05D001185 3.6e-20 104.4 52 92.3
Ca_23845_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.1e-19 102.8 182 31.9
Ca_23895_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.4e-19 102.4 602 22.1
ECA234G2242 Erigeron canadensis HOM05D000088 ORTHO05D001030 1.4e-19 102.4 508 25.8
Atru.chr9.330 Acer truncatum HOM05D005324 ORTHO05D001185 4.0e-19 100.9 216 32.4
Lj1g0026229 Lotus japonicus HOM05D005324 ORTHO05D001185 9.0e-19 99.8 98 40.8
Ca_19341_v3 Cicer arietinum L. HOM05D005324 ORTHO05D000048 2.0e-18 98.6 198 36.4
CANSAT80G1954 Cannabis sativa HOM05D005324 ORTHO05D001185 3.4e-18 97.8 150 37.3
Ca_30800_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.4e-16 92.4 208 36.1
BcaB01g00422 Brassica carinata HOM05D003376 ORTHO05D001185 3.2e-16 91.3 82 62.2
Thecc.01G138000 Theobroma cacao HOM05D005324 ORTHO05D001185 3.2e-16 91.3 92 45.7
Atru.chr4.310 Acer truncatum HOM05D005324 ORTHO05D001185 4.2e-16 90.9 169 36.7
BolC4t23954H Brassica oleracea HOM05D003376 ORTHO05D001185 5.5e-16 90.5 64 76.6
Ca_05875_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 8.7e-14 83.2 181 37.6
BraA05t20179Z Brassica rapa HOM05D003376 ORTHO05D001185 4.3e-13 80.9 149 39.6
Ca_04090_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.3e-12 79.3 193 31.1
Ca_19340_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.3e-12 79.3 245 33.5
Medtr3g436690 Medicago truncatula HOM05D005324 ORTHO05D001185 1.3e-12 79.3 103 36.9
Atru.chr4.2110 Acer truncatum HOM05D005324 ORTHO05D001185 2.8e-12 78.2 142 34.5
PGSC0003DMG400042319 Solanum tuberosum HOM05D019581 ORTHO05D018017 6.2e-12 77.0 96 39.6
BcaC02g12005 Brassica carinata HOM05D003376 ORTHO05D001185 2.4e-11 75.1 44 86.4
MBI03_g38333_MAGBIO Magnolia biondii HOM05D005324 ORTHO05D001185 2.4e-11 75.1 195 29.2
A09p31910 Brassica napus HOM05D003376 ORTHO05D001185 4.0e-11 74.3 46 78.3
Ca_18104_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 6.9e-11 73.6 104 35.6
TAR633G1644 Trochodendron aralioides HOM05D005152 ORTHO05D006162 9.0e-11 73.2 167 31.1
MBI14_g23481_MAGBIO Magnolia biondii HOM05D005324 ORTHO05D001185 2.6e-10 71.6 85 43.5
ECA248G1715 Erigeron canadensis HOM05D005324 ORTHO05D001185 4.5e-10 70.9 77 40.3
Ca_22741_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.0e-09 69.7 283 24.0
Ca_02976_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.7e-09 68.9 114 34.2
Lj2g0023412 Lotus japonicus HOM05D005324 ORTHO05D018017 2.2e-09 68.6 93 38.7
Atru.chr13.2474 Acer truncatum HOM05D005324 ORTHO05D001185 2.9e-09 68.2 168 31.0
Cc00_g17730 Coffea canephora HOM05D003326 ORTHO05D001185 2.9e-09 68.2 155 34.2
Carub.0002s1007 Capsella rubella HOM05D003376 ORTHO05D001185 1.1e-08 66.2 191 27.2
Ca_13672_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.1e-08 66.2 151 29.1
Atru.chr13.2110 Acer truncatum HOM05D005324 ORTHO05D001185 1.4e-08 65.9 134 32.8
Ca_30430_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.9e-08 65.5 128 31.2
Ca_13202_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.5e-08 65.1 82 37.8
Ca_29877_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.5e-08 65.1 82 37.8
Ca_30934_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.5e-08 65.1 109 33.9
Atru.chr5.1763 Acer truncatum HOM05D005324 ORTHO05D001185 3.2e-08 64.7 327 20.2
Medtr4g103910 Medicago truncatula HOM05D005324 ORTHO05D001185 4.2e-08 64.3 94 31.9
Ca_25326_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.5e-08 63.9 111 34.2
Atru.chr5.1824 Acer truncatum HOM05D005324 ORTHO05D001185 9.3e-08 63.2 78 37.2
Ca_21962_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 9.3e-08 63.2 82 35.4
Ca_00995_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.7e-07 61.6 176 34.7
Ca_03092_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.7e-07 61.6 341 24.0
Ca_07874_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.5e-07 61.2 353 24.1
Cc00_g06960 Coffea canephora HOM05D003326 ORTHO05D001185 7.9e-07 60.1 175 27.4
COL.COLO4_27206 Corchorus olitorius HOM05D003326 ORTHO05D001185 1.8e-06 58.9 175 32.0
Glyma.11G236000 Glycine max HOM05D005324 ORTHO05D001185 2.3e-06 58.5 112 32.1
Ca_11652_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.1e-06 57.4 356 24.2


User provided reference genes

Program Settings