Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p27390 Brassica napus HOM05D005348 ORTHO05D006635 0.0e+00 1331.6 707 100.0
BraA09t38310Z Brassica rapa HOM05D005348 ORTHO05D006635 0.0e+00 1294.3 730 92.7
C09p34740 Brassica napus HOM05D005348 ORTHO05D006635 0.0e+00 1279.2 707 94.8
BolC9t56320H Brassica oleracea HOM05D005348 ORTHO05D006635 0.0e+00 1260.0 746 89.8
BcaB01g01675 Brassica carinata HOM05D005348 ORTHO05D006635 0.0e+00 1172.5 705 84.7
Sp6g05730 Schrenkiella parvula HOM05D005348 ORTHO05D006635 0.0e+00 1164.8 707 85.1
BcaB05g23815 Brassica carinata HOM05D005348 ORTHO05D006635 0.0e+00 1141.3 706 81.9
AL6G46320 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 0.0e+00 1138.6 719 83.7
Carub.0006s3081 Capsella rubella HOM05D005348 ORTHO05D006635 0.0e+00 1136.7 720 79.0
AL6G46446 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 0.0e+00 1135.6 720 80.4
AT4G11720 Arabidopsis thaliana HOM05D005348 ORTHO05D006635 0.0e+00 1107.8 720 79.6
CARHR254650 Cardamine hirsuta HOM05D005348 ORTHO05D006635 0.0e+00 1092.0 714 80.4
Thhalv10028515m.g Eutrema salsugineum HOM05D005348 ORTHO05D006635 6.9e-301 1036.9 637 82.6
THA.LOC104813014 Tarenaya hassleriana HOM05D005348 ORTHO05D006635 1.2e-284 983.0 629 75.8
Aa31LG9G10660 Aethionema arabicum HOM05D005348 ORTHO05D006635 6.1e-281 970.7 699 74.5
QL12p017446 Quercus lobata HOM05D005348 ORTHO05D006635 4.8e-270 934.5 597 73.7
Thecc.03G272300 Theobroma cacao HOM05D005348 ORTHO05D006635 1.5e-266 922.9 590 73.4
Duzib068G0163 Durio zibethinus HOM05D005348 ORTHO05D006635 8.0e-265 917.1 595 73.3
Gorai.007G022400 Gossypium raimondii HOM05D005348 ORTHO05D006635 1.1e-261 906.7 595 71.8
PGR031G1121 Punica granatum HOM05D005348 ORTHO05D006635 1.4e-261 906.4 605 70.7
FvH4_5g28890 Fragaria vesca HOM05D005348 ORTHO05D006635 5.5e-258 894.4 599 70.1
MD04G1066100 Malus domestica HOM05D005348 ORTHO05D006635 1.6e-257 892.9 600 70.5
Medtr5g010740 Medicago truncatula HOM05D005348 ORTHO05D006635 1.6e-257 892.9 582 71.5
Dinv39001 Davidia involucrata HOM05D005348 ORTHO05D006635 2.1e-257 892.5 600 70.5
Prupe.5G092400 Prunus persica HOM05D005348 ORTHO05D006635 3.6e-257 891.7 599 70.1
Phvul.002G154300 Phaseolus vulgaris HOM05D005348 ORTHO05D006635 4.0e-256 888.3 595 69.7
Actinidia05223 Actinidia chinensis HOM05D005348 ORTHO05D006635 8.8e-256 887.1 599 70.3
Sc05g0000210 Simmondsia chinensis HOM05D005348 ORTHO05D006635 8.8e-256 887.1 575 71.8
TAR375G0646 Trochodendron aralioides HOM05D005348 ORTHO05D006635 8.8e-256 887.1 578 71.5
PSO782G2170 Papaver somniferum HOM05D005348 ORTHO05D006635 2.0e-255 885.9 589 71.0
CANSAT21G2165 Cannabis sativa HOM05D005348 ORTHO05D006635 5.7e-255 884.4 579 71.0
PSO478G3496 Papaver somniferum HOM05D005348 ORTHO05D006635 7.5e-255 884.0 587 70.9
Psat2g181800 Pisum sativum HOM05D005348 ORTHO05D006635 1.1e-253 880.2 593 68.5
TPR.G6715 Trifolium pratense HOM05D005348 ORTHO05D006635 1.4e-253 879.8 594 68.4
CiPaw.11G140300 Carya illinoinensis HOM05D005348 ORTHO05D006635 2.4e-253 879.0 645 67.1
Manes.02G025740 Manihot esculenta HOM05D005348 ORTHO05D006635 2.4e-253 879.0 613 69.0
GSVIVG01019819001 Vitis vinifera HOM05D005348 ORTHO05D006635 1.6e-252 876.3 672 64.0
Migut.E01288 Erythranthe guttata HOM05D005348 ORTHO05D006635 2.0e-252 875.9 586 69.3
Eucgr.D01915 Eucalyptus grandis HOM05D005348 ORTHO05D006635 1.0e-251 873.6 577 71.9
ClCG01G003080 Citrullus lanatus HOM05D005348 ORTHO05D006635 2.3e-251 872.5 631 66.4
Lj2g0017844 Lotus japonicus HOM05D005348 ORTHO05D006635 2.9e-251 872.1 573 70.9
CSS0016729 Camellia sinensis var. sinensis HOM05D005348 ORTHO05D006635 1.2e-249 866.7 586 67.9
Aqoxy7G00422 Aquilegia oxysepala HOM05D005348 ORTHO05D006635 1.6e-249 866.3 597 68.2
Sed0022971 Sechium edule HOM05D005348 ORTHO05D006635 6.1e-249 864.4 599 66.9
SGA_v2.0_scaffold144G35970 Striga asiatica HOM05D005348 ORTHO05D006635 3.0e-248 862.1 599 67.1
arahy.Tifrunner.gnm1.ann1.C7APUF Arachis hypogaea HOM05D005348 ORTHO05D006635 7.5e-247 857.4 605 67.1
Cc08_g14090 Coffea canephora HOM05D005348 ORTHO05D006635 2.2e-246 855.9 664 61.9
arahy.Tifrunner.gnm1.ann1.SKE7H3 Arachis hypogaea HOM05D005348 ORTHO05D006635 4.9e-246 854.7 605 66.9
RcHm_v2.0_Chr4g0410761 Rosa chinensis HOM05D005348 ORTHO05D006635 6.4e-246 854.4 582 70.1
Ciclev10019148m.g Citrus clementina HOM05D005348 ORTHO05D006635 1.0e-243 847.0 579 69.3
CAN.G981.21 Capsicum annuum HOM05D005348 ORTHO05D006635 5.0e-243 844.7 636 63.4
Sopen08g028770 Solanum pennellii HOM05D005348 ORTHO05D006635 3.3e-242 842.0 636 63.4
SHI23548 Sapria himalayana HOM05D005348 ORTHO05D006635 9.5e-242 840.5 595 66.7
EL10Ac4g10111 Beta vulgaris HOM05D005348 ORTHO05D006635 5.2e-240 834.7 602 65.6
FAN13G3003 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.0e-235 820.5 641 62.9
Lalb_Chr16g0377191 Lupinus albus HOM05D005348 ORTHO05D006635 3.6e-233 812.0 580 66.4
Lsat_1_v5_gn_3_5380 Lactuca sativa HOM05D005348 ORTHO05D006635 8.1e-233 810.8 600 64.0
Sabra01G0082300 Salix brachista HOM05D005348 ORTHO05D006635 8.1e-233 810.8 636 61.8
DCAR_006756 Daucus carota HOM05D005348 ORTHO05D006635 6.8e-232 807.7 598 64.7
TWI15G0275 Tripterygium wilfordii HOM05D005348 ORTHO05D006635 8.9e-232 807.4 521 71.8
Ah.06g194640 Amaranthus hybridus HOM05D005348 ORTHO05D006635 1.7e-230 803.1 586 64.7
ECA240G2378 Erigeron canadensis HOM05D005348 ORTHO05D006635 4.1e-229 798.5 573 65.1
Rhsim07G0093800 Rhododendron simsii HOM05D005348 ORTHO05D006635 2.1e-228 796.2 747 55.0
SalBow1G6288 Salvia bowleyana HOM05D005348 ORTHO05D006635 5.1e-227 791.6 642 60.9
Manes.01G066000 Manihot esculenta HOM05D005348 ORTHO05D006635 6.6e-227 791.2 516 71.7
Potri.001G109000 Populus trichocarpa HOM05D005348 ORTHO05D006635 9.5e-226 787.3 533 69.6
Nn6g34225 Nelumbo nucifera HOM05D005348 ORTHO05D006635 5.2e-224 781.6 519 70.1
MELO3C005635.2 Cucumis melo HOM05D005348 ORTHO05D006635 1.5e-223 780.0 565 65.5
Glyma.15G240000 Glycine max HOM05D005348 ORTHO05D006635 7.1e-221 771.2 537 67.8
FAN18G1071 Fragaria x ananassa HOM05D005348 ORTHO05D006635 4.6e-220 768.5 591 65.0
Haze_08938 Corylus avellana HOM05D005348 ORTHO05D006635 2.3e-219 766.1 603 64.5
Glyma.11G026100 Glycine max HOM05D005348 ORTHO05D006635 1.5e-218 763.5 537 67.4
vmacro13927 Vaccinium macrocarpon HOM05D005348 ORTHO05D006635 7.6e-215 751.1 741 54.0
FAN18G0890 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.3e-211 740.3 588 63.1
CsaV3_5G003200 Cucumis sativus L. HOM05D005348 ORTHO05D006635 3.6e-209 732.3 528 66.9
Glyma.09G081600 Glycine max HOM05D005348 ORTHO05D006635 4.5e-207 725.3 485 69.3
Peaxi162Scf00714g00430 Petunia axillaris HOM05D005348 ORTHO05D006635 1.3e-206 723.8 485 70.3
AUR62037708 Chenopodium quinoa HOM05D005348 ORTHO05D006635 1.6e-204 716.8 543 64.8
AUR62000200 Chenopodium quinoa HOM05D005348 ORTHO05D006635 8.7e-203 711.1 536 65.1
Solyc08g080450.3 Solanum lycopersicum HOM05D005348 ORTHO05D006635 5.8e-199 698.4 565 60.5
Nitab4.5_0002234g0010 Nicotiana tabacum HOM05D005348 ORTHO05D006635 6.4e-198 694.9 630 57.3
AUR62006548 Chenopodium quinoa HOM05D005348 ORTHO05D006635 3.5e-196 689.1 512 63.5
RcHm_v2.0_Chr7g0199071 Rosa chinensis HOM05D005348 ORTHO05D006635 3.5e-196 689.1 574 59.9
Os05g0269500 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 7.9e-196 688.0 586 58.4
COL.COLO4_05261 Corchorus olitorius HOM05D005348 ORTHO05D006635 2.3e-195 686.4 576 60.6
MBI04_g31975_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 2.6e-191 672.9 571 59.4
Atru.chr9.1551 Acer truncatum HOM05D005348 ORTHO05D006635 3.9e-187 659.1 411 74.2
FvH4_5g01650 Fragaria vesca HOM05D005348 ORTHO05D006635 3.2e-181 639.4 519 62.8
Gohir.A11G021400 Gossypium hirsutum HOM05D005348 ORTHO05D006635 7.9e-180 634.8 392 74.2
Gohir.D11G021100 Gossypium hirsutum HOM05D005348 ORTHO05D006635 1.8e-179 633.6 507 61.5
Os09g0525700 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 2.8e-177 626.3 582 55.2
VMungo1215G1946 Vigna mungo HOM05D005348 ORTHO05D006635 1.5e-175 620.5 416 68.5
Lj8C237T7 Lonicera japonica HOM05D005348 ORTHO05D006635 1.1e-162 577.8 426 65.3
Nitab4.5_0002853g0050 Nicotiana tabacum HOM05D005348 ORTHO05D006635 4.2e-157 559.3 612 50.3
Ca_06657_v3 Cicer arietinum L. HOM05D005348 ORTHO05D006635 5.3e-152 542.3 570 52.1
unitig_26.g9696 Utricularia gibba HOM05D005348 ORTHO05D006635 6.1e-148 528.9 579 49.1
Cpa.g.sc29.190 Carica papaya HOM05D005348 ORTHO05D006635 1.2e-140 504.6 346 69.1
HPP92_004952 Vanilla planifolia HOM05D005348 ORTHO05D006635 6.1e-132 475.7 563 45.5
Zm00001eb103180 Zea mays HOM05D005348 ORTHO05D006635 8.6e-126 455.3 376 58.0
AUR62000197 Chenopodium quinoa HOM05D005348 ORTHO05D006635 6.8e-107 392.5 315 60.3
Glyma.09G081420 Glycine max HOM05D005348 ORTHO05D006635 1.9e-104 384.4 282 66.0
ATR0757G099 Amborella trichopoda HOM05D005348 ORTHO05D006635 2.0e-82 311.2 210 66.2
Hund02677 Selenicereus undatus HOM05D005348 ORTHO05D006635 3.1e-75 287.3 259 57.9
Hund02678 Selenicereus undatus HOM05D005348 ORTHO05D006635 7.9e-71 272.7 177 72.3
VMungo1215G1628 Vigna mungo HOM05D005348 ORTHO05D006635 2.8e-68 264.2 173 69.9
Prupe.8G039500 Prunus persica HOM05D005348 ORTHO05D006635 3.4e-66 257.3 297 47.5
FAN04G3017 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.7e-57 228.4 162 64.8
Prupe.8G039400 Prunus persica HOM05D005348 ORTHO05D006635 8.5e-57 226.1 158 67.1
FAN04G2632 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.7e-52 211.8 586 29.4
Cre16.g674852 Chlamydomonas reinhardtii HOM05D005348 ORTHO05D006635 4.5e-42 177.2 676 25.9
MBI04_g31964_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 1.0e-41 176.0 158 60.8
Glyma.11G176306 Glycine max HOM05D005348 ORTHO05D006635 2.2e-41 174.9 91 82.4
FAN08G1421 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.2e-39 169.1 131 68.7
FAN08G1570 Fragaria x ananassa HOM05D005348 ORTHO05D006635 4.7e-39 167.2 173 58.4
Glyma.01G216933 Glycine max HOM05D005348 ORTHO05D006635 2.6e-37 161.4 115 66.1
Mapoly0066s0032 Marchantia polymorpha HOM05D005348 ORTHO05D006635 1.8e-35 155.2 513 24.4
MSTRG.13824 Avicennia marina HOM05D005348 ORTHO05D006635 4.5e-34 150.6 94 70.2
Glyma.09G081380 Glycine max HOM05D005348 ORTHO05D006635 1.7e-33 148.7 98 67.3
HanXRQChr02g0035411 Helianthus annuus HOM05D005348 ORTHO05D006635 6.5e-33 146.7 119 56.3
CBR_g19301 Chara braunii HOM05D005348 ORTHO05D006635 2.5e-32 144.8 579 25.2
Peaxi162Scf00714g00422 Petunia axillaris HOM05D005348 ORTHO05D006635 4.2e-32 144.1 95 67.4
Pp3c25_15230 Physcomitrium patens HOM05D005348 ORTHO05D006635 9.4e-32 142.9 331 29.3
Mapoly0035s0066 Marchantia polymorpha HOM05D005348 ORTHO05D006635 4.4e-29 134.0 610 24.6
ATR0757G119 Amborella trichopoda HOM05D005348 ORTHO05D006635 1.5e-24 119.0 78 62.8
Gohir.D11G021150 Gossypium hirsutum HOM05D005348 ORTHO05D006635 1.5e-24 119.0 121 56.2
FAN13G0849 Fragaria x ananassa HOM05D005348 ORTHO05D006635 3.3e-24 117.9 96 69.8
Glyma.11G026250 Glycine max HOM05D005348 ORTHO05D006635 2.3e-22 111.7 103 59.2
FAN08G2219 Fragaria x ananassa HOM05D005348 ORTHO05D006635 3.0e-22 111.3 62 77.4
Lj8A237G27 Lonicera japonica HOM05D005348 ORTHO05D006635 5.2e-22 110.5 74 74.3
PGSC0003DMG400003049 Solanum tuberosum HOM05D005348 ORTHO05D006635 3.5e-18 97.8 57 73.7
arahy.Tifrunner.gnm1.ann1.AXGL4F Arachis hypogaea HOM05D005348 ORTHO05D006635 4.5e-18 97.4 62 71.0
FvH4_5g01630 Fragaria vesca HOM05D005348 ORTHO05D006635 1.1e-11 76.3 44 75.0
CsaV3_6G021380 Cucumis sativus L. HOM05D005348 ORTHO05D006635 1.1e-06 59.7 132 28.8


User provided reference genes

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