Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p27320 Brassica napus HOM05D005805 ORTHO05D007226 1.7e-198 696.0 417 100.0
C09p34650 Brassica napus HOM05D005805 ORTHO05D007226 2.2e-193 679.1 417 93.5
BraA09t38298Z Brassica rapa HOM05D005805 ORTHO05D007226 7.0e-176 620.9 421 92.6
BolC9t56310H Brassica oleracea HOM05D005805 ORTHO05D007226 5.5e-173 611.3 417 87.3
Thhalv10028709m.g Eutrema salsugineum HOM05D005805 ORTHO05D007226 5.0e-150 535.0 423 82.0
A02p25990 Brassica napus HOM05D005805 ORTHO05D007226 4.3e-141 505.4 421 73.9
BraA02t07597Z Brassica rapa HOM05D005805 ORTHO05D007226 4.3e-141 505.4 421 73.9
AL6G46500 Arabidopsis lyrata HOM05D005805 ORTHO05D007226 1.2e-138 497.3 454 75.3
Sp6g05660 Schrenkiella parvula HOM05D005805 ORTHO05D007226 9.8e-138 494.2 423 73.0
BcaB05g23807 Brassica carinata HOM05D005805 ORTHO05D007226 1.7e-134 483.4 421 74.6
Aa31LG9G10640 Aethionema arabicum HOM05D005805 ORTHO05D007226 2.6e-130 469.5 424 73.8
Carub.0006s3090 Capsella rubella HOM05D005805 ORTHO05D007226 2.6e-130 469.5 455 71.9
CARHR254520 Cardamine hirsuta HOM05D005805 ORTHO05D007226 7.6e-130 468.0 425 71.5
AT4G11790 Arabidopsis thaliana HOM05D005805 ORTHO05D007226 6.9e-123 444.9 471 66.9
THA.LOC104806368 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 2.4e-112 409.8 443 64.8
BcaC03g16328 Brassica carinata HOM05D005805 ORTHO05D007226 1.3e-110 404.1 361 70.4
THA.LOC104814292 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 4.3e-109 399.1 447 58.6
BcaB01g01678 Brassica carinata HOM05D005805 ORTHO05D007226 4.0e-107 392.5 434 59.7
C02p41470 Brassica napus HOM05D005805 ORTHO05D007226 2.1e-100 370.2 364 66.2
Eucgr.D01927 Eucalyptus grandis HOM05D005805 ORTHO05D007226 3.1e-83 313.2 441 47.2
Ca_06662_v3 Cicer arietinum L. HOM05D005805 ORTHO05D007226 1.3e-81 307.8 443 44.7
CiPaw.11G141700 Carya illinoinensis HOM05D005805 ORTHO05D007226 1.1e-80 304.7 473 50.3
VMungo1215G3124 Vigna mungo HOM05D005805 ORTHO05D007226 7.2e-80 302.0 432 45.4
Nitab4.5_0009882g0030 Nicotiana tabacum HOM05D005805 ORTHO05D007226 1.6e-79 300.8 441 47.4
Glyma.11G026600 Glycine max HOM05D005805 ORTHO05D007226 2.7e-79 300.1 441 45.1
CSS0001301 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 6.1e-79 298.9 432 44.7
Sopen08g028610 Solanum pennellii HOM05D005805 ORTHO05D007226 1.0e-78 298.1 434 45.9
Lalb_Chr16g0379971 Lupinus albus HOM05D005805 ORTHO05D007226 1.8e-78 297.4 430 45.1
Lsat_1_v5_gn_6_12941 Lactuca sativa HOM05D005805 ORTHO05D007226 3.0e-78 296.6 426 46.0
HanXRQChr02g0048701 Helianthus annuus HOM05D005805 ORTHO05D007226 3.9e-78 296.2 380 48.2
QL12p017075 Quercus lobata HOM05D005805 ORTHO05D007226 5.1e-78 295.8 474 51.9
Sed0020250 Sechium edule HOM05D005805 ORTHO05D007226 5.1e-78 295.8 428 45.3
Nitab4.5_0001714g0200 Nicotiana tabacum HOM05D005805 ORTHO05D007226 1.1e-77 294.7 407 48.9
CSS0012055 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 2.0e-77 293.9 430 45.6
PGR031G2899 Punica granatum HOM05D005805 ORTHO05D007226 2.0e-77 293.9 464 45.0
Dinv39015 Davidia involucrata HOM05D005805 ORTHO05D007226 3.3e-77 293.1 402 46.8
Glyma.01G215800 Glycine max HOM05D005805 ORTHO05D007226 3.3e-77 293.1 439 45.6
CAN.G981.40 Capsicum annuum HOM05D005805 ORTHO05D007226 1.7e-76 290.8 441 43.8
TPR.G6662 Trifolium pratense HOM05D005805 ORTHO05D007226 1.7e-76 290.8 461 53.1
arahy.Tifrunner.gnm1.ann1.8FZ8QS Arachis hypogaea HOM05D005805 ORTHO05D007226 3.7e-76 289.7 441 52.6
Cfa012095 Carpinus fangiana HOM05D005805 ORTHO05D007226 4.8e-76 289.3 499 51.5
Phvul.002G153800 Phaseolus vulgaris HOM05D005805 ORTHO05D007226 4.8e-76 289.3 403 45.9
PGSC0003DMG400022755 Solanum tuberosum HOM05D005805 ORTHO05D007226 4.8e-76 289.3 406 46.3
Ciclev10020090m.g Citrus clementina HOM05D005805 ORTHO05D007226 1.4e-75 287.7 480 50.8
Hma1.2p1_0371F.1_g138200 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 3.1e-75 286.6 426 43.0
CiPaw.12G099000 Carya illinoinensis HOM05D005805 ORTHO05D007226 4.1e-75 286.2 476 51.1
Duzib068G1011 Durio zibethinus HOM05D005805 ORTHO05D007226 4.1e-75 286.2 425 45.4
Peaxi162Scf00620g00920 Petunia axillaris HOM05D005805 ORTHO05D007226 1.2e-74 284.6 433 43.9
Oeu031590.1 Olea europaea HOM05D005805 ORTHO05D007226 2.0e-74 283.9 414 43.5
GSVIVG01019866001 Vitis vinifera HOM05D005805 ORTHO05D007226 1.3e-73 281.2 436 42.0
Migut.A00918 Erythranthe guttata HOM05D005805 ORTHO05D007226 3.8e-73 279.6 440 48.2
Gorai.004G207600 Gossypium raimondii HOM05D005805 ORTHO05D007226 3.8e-73 279.6 420 51.7
Potri.001G111100 Populus trichocarpa HOM05D005805 ORTHO05D007226 3.8e-73 279.6 462 51.7
Actinidia14511 Actinidia chinensis HOM05D005805 ORTHO05D007226 5.0e-73 279.3 430 43.0
Lalb_Chr05g0214771 Lupinus albus HOM05D005805 ORTHO05D007226 8.5e-73 278.5 431 42.7
Gorai.003G162800 Gossypium raimondii HOM05D005805 ORTHO05D007226 1.4e-72 277.7 472 51.5
Gohir.D03G155100 Gossypium hirsutum HOM05D005805 ORTHO05D007226 2.5e-72 276.9 472 51.5
Medtr5g010950 Medicago truncatula HOM05D005805 ORTHO05D007226 2.5e-72 276.9 440 42.7
Thecc.03G270600 Theobroma cacao HOM05D005805 ORTHO05D007226 4.2e-72 276.2 452 50.7
Actinidia02051 Actinidia chinensis HOM05D005805 ORTHO05D007226 5.5e-72 275.8 428 42.8
Gohir.A03G015238 Gossypium hirsutum HOM05D005805 ORTHO05D007226 7.2e-72 275.4 463 51.6
Solyc08g080260.4 Solanum lycopersicum HOM05D005805 ORTHO05D007226 7.2e-72 275.4 439 43.3
TAR375G0540 Trochodendron aralioides HOM05D005805 ORTHO05D007226 1.2e-71 274.6 440 41.8
HanXRQChr07g0188541 Helianthus annuus HOM05D005805 ORTHO05D007226 2.1e-71 273.9 366 53.0
ClCG01G003160 Citrullus lanatus HOM05D005805 ORTHO05D007226 7.9e-71 271.9 480 40.8
Cc08_g13930 Coffea canephora HOM05D005805 ORTHO05D007226 7.9e-71 271.9 433 40.6
MD04G1068600 Malus domestica HOM05D005805 ORTHO05D007226 1.0e-70 271.6 518 44.6
Psat2g181520 Pisum sativum HOM05D005805 ORTHO05D007226 1.0e-70 271.6 459 48.8
Potri.003G120900 Populus trichocarpa HOM05D005805 ORTHO05D007226 1.4e-70 271.2 501 48.3
ECA233G3280 Erigeron canadensis HOM05D005805 ORTHO05D007226 1.8e-70 270.8 437 44.6
TAR629G3121 Trochodendron aralioides HOM05D005805 ORTHO05D007226 2.3e-70 270.4 428 42.1
MD06G1071900 Malus domestica HOM05D005805 ORTHO05D007226 3.0e-70 270.0 518 45.9
Duzib084G0260 Durio zibethinus HOM05D005805 ORTHO05D007226 6.7e-70 268.9 459 51.9
vmacro00648 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 2.6e-69 266.9 408 43.9
MELO3C005626.2 Cucumis melo HOM05D005805 ORTHO05D007226 4.4e-69 266.2 420 43.1
Sc01g0008800 Simmondsia chinensis HOM05D005805 ORTHO05D007226 4.4e-69 266.2 476 42.9
TWI81G0996 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 4.4e-69 266.2 490 49.6
Lj2g0007037 Lotus japonicus HOM05D005805 ORTHO05D007226 9.7e-69 265.0 495 48.9
Duzib205G1286 Durio zibethinus HOM05D005805 ORTHO05D007226 1.1e-67 261.5 443 51.7
Aqoxy7G00467 Aquilegia oxysepala HOM05D005805 ORTHO05D007226 1.4e-67 261.2 358 45.3
Nn1g01331 Nelumbo nucifera HOM05D005805 ORTHO05D007226 1.4e-67 261.2 436 40.1
FAN13G0947 Fragaria x ananassa HOM05D005805 ORTHO05D007226 9.1e-67 258.5 514 42.6
FvH4_5g01420 Fragaria vesca HOM05D005805 ORTHO05D007226 1.2e-66 258.1 522 42.1
Prupe.5G089600 Prunus persica HOM05D005805 ORTHO05D007226 1.6e-66 257.7 529 46.7
FAN04G0223 Fragaria x ananassa HOM05D005805 ORTHO05D007226 2.0e-66 257.3 524 42.2
FAN18G3929 Fragaria x ananassa HOM05D005805 ORTHO05D007226 1.0e-65 255.0 522 42.0
FAN08G1094 Fragaria x ananassa HOM05D005805 ORTHO05D007226 2.2e-65 253.8 532 41.4
Manes.01G068001 Manihot esculenta HOM05D005805 ORTHO05D007226 2.9e-65 253.4 412 54.1
CsaV3_5G003280 Cucumis sativus L. HOM05D005805 ORTHO05D007226 1.5e-64 251.1 360 46.1
Sabra01G0084700 Salix brachista HOM05D005805 ORTHO05D007226 3.2e-64 250.0 518 43.2
EL10Ac5g12722 Beta vulgaris HOM05D005805 ORTHO05D007226 1.2e-63 248.1 479 44.5
Sed0020925 Sechium edule HOM05D005805 ORTHO05D007226 1.2e-63 248.1 358 44.7
AUR62017300 Chenopodium quinoa HOM05D005805 ORTHO05D007226 1.6e-63 247.7 474 44.3
TWI60G0251 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 2.7e-63 246.9 499 47.5
AUR62010661 Chenopodium quinoa HOM05D005805 ORTHO05D007226 1.8e-62 244.2 469 45.2
CANSAT21G1670 Cannabis sativa HOM05D005805 ORTHO05D007226 2.3e-62 243.8 553 43.8
Os03g0667700 Oryza sativa ssp. japonica HOM05D005805 ORTHO05D007226 1.2e-61 241.5 399 40.4
Gohir.A08G178400 Gossypium hirsutum HOM05D005805 ORTHO05D007226 1.5e-61 241.1 490 47.3
RcHm_v2.0_Chr7g0199441 Rosa chinensis HOM05D005805 ORTHO05D007226 1.5e-61 241.1 527 45.4
HPP92_020989 Vanilla planifolia HOM05D005805 ORTHO05D007226 3.3e-61 240.0 449 38.1
Lj2A197T60 Lonicera japonica HOM05D005805 ORTHO05D007226 7.5e-61 238.8 431 39.0
Hund28361 Selenicereus undatus HOM05D005805 ORTHO05D007226 1.7e-60 237.7 504 41.5
Hund28365 Selenicereus undatus HOM05D005805 ORTHO05D007226 1.7e-60 237.7 504 41.5
Zm00001eb073520 Zea mays HOM05D005805 ORTHO05D007226 2.8e-60 236.9 463 41.3
unitig_8.g3899 Utricularia gibba HOM05D005805 ORTHO05D007226 4.8e-60 236.1 427 39.1
MBI04_g40844_MAGBIO Magnolia biondii HOM05D005805 ORTHO05D007226 8.2e-60 235.3 400 39.5
PSO478G0076 Papaver somniferum HOM05D005805 ORTHO05D007226 7.0e-59 232.3 581 38.7
Oeu001898.3 Olea europaea HOM05D005805 ORTHO05D007226 2.7e-58 230.3 409 39.6
arahy.Tifrunner.gnm1.ann1.J6ALFQ Arachis hypogaea HOM05D005805 ORTHO05D007226 7.7e-58 228.8 514 43.4
Dinv37696 Davidia involucrata HOM05D005805 ORTHO05D007226 2.9e-57 226.9 336 43.8
Ah.12g057730 Amaranthus hybridus HOM05D005805 ORTHO05D007226 2.5e-56 223.8 499 44.1
PSO782G3262 Papaver somniferum HOM05D005805 ORTHO05D007226 1.2e-55 221.5 597 39.5
ATR0757G009 Amborella trichopoda HOM05D005805 ORTHO05D007226 1.6e-55 221.1 376 38.8
CDE11G0359 Ceratophyllum demersum HOM05D005805 ORTHO05D007226 1.0e-54 218.4 506 33.2
Haze_08957 Corylus avellana HOM05D005805 ORTHO05D007226 5.2e-54 216.1 516 41.9
Manes.02G028100 Manihot esculenta HOM05D005805 ORTHO05D007226 7.0e-51 205.7 179 61.5
Rhsim08G0109800 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.3e-49 201.4 196 58.2
SalBow6G0943 Salvia bowleyana HOM05D005805 ORTHO05D007226 8.6e-49 198.7 367 46.9
COL.COLO4_05276 Corchorus olitorius HOM05D005805 ORTHO05D007226 2.5e-48 197.2 162 63.6
BolC2t10164H Brassica oleracea HOM05D005805 ORTHO05D007226 3.6e-47 193.4 133 78.2
Gohir.D08G196900 Gossypium hirsutum HOM05D005805 ORTHO05D007226 5.9e-42 176.0 156 60.3
TAR374G1484 Trochodendron aralioides HOM05D005805 ORTHO05D007226 1.5e-40 171.4 171 57.9
Ah.02g116420 Amaranthus hybridus HOM05D005805 ORTHO05D007226 5.0e-33 146.4 475 35.2
Atru.chr9.1535 Acer truncatum HOM05D005805 ORTHO05D007226 1.6e-31 141.4 155 51.0
Cpa.g.sc29.9 Carica papaya HOM05D005805 ORTHO05D007226 2.9e-28 130.6 169 48.5
vmacro10803 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 1.9e-27 127.9 315 34.0
AagrBONN_evm.TU.Sc2ySwM_344.4489 Anthoceros agrestis HOM05D005805 ORTHO05D007226 3.5e-26 123.6 365 32.1
DCAR_006764 Daucus carota HOM05D005805 ORTHO05D007226 2.3e-22 110.9 144 46.5
COL.COLO4_05274 Corchorus olitorius HOM05D005805 ORTHO05D007226 1.9e-16 91.3 60 70.0
Hma1.2p1_0002F.1_g002590 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 7.3e-16 89.4 65 56.9
CBR_g49019 Chara braunii HOM05D005805 ORTHO05D007226 5.2e-14 83.2 94 44.7
SGA_v2.0_scaffold60G20821 Striga asiatica HOM05D011763 ORTHO05D014257 3.8e-12 77.0 56 60.7
SGA_v2.0_scaffold60G21020 Striga asiatica HOM05D011763 ORTHO05D014257 2.3e-09 67.8 104 39.4


User provided reference genes

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