Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p27030 Brassica napus HOM05D004508 ORTHO05D005180 9.0e-226 786.6 392 100.0
BraA09t38274Z Brassica rapa HOM05D004508 ORTHO05D005180 9.0e-226 786.6 392 100.0
BcaC04g21205 Brassica carinata HOM05D004508 ORTHO05D005180 8.4e-224 780.0 395 99.0
C09p34340 Brassica napus HOM05D004508 ORTHO05D005180 8.4e-224 780.0 395 99.0
BolC9t56277H Brassica oleracea HOM05D004508 ORTHO05D005180 3.2e-223 778.1 393 99.0
BcaB01g01727 Brassica carinata HOM05D004508 ORTHO05D005180 2.5e-212 741.9 395 94.4
Sp6g05370 Schrenkiella parvula HOM05D004508 ORTHO05D005180 2.0e-209 732.3 394 92.4
BcaB01g02657 Brassica carinata HOM05D004508 ORTHO05D005180 4.5e-209 731.1 389 93.3
BraA03t12150Z Brassica rapa HOM05D004508 ORTHO05D005180 6.5e-208 727.2 394 90.4
AT4G12130 Arabidopsis thaliana HOM05D004508 ORTHO05D005180 3.6e-206 721.5 394 90.4
CARHR254050 Cardamine hirsuta HOM05D004508 ORTHO05D005180 3.6e-206 721.5 394 90.4
Carub.0006s3132 Capsella rubella HOM05D004508 ORTHO05D005180 2.0e-204 715.7 394 89.1
AL6G47050 Arabidopsis lyrata HOM05D004508 ORTHO05D005180 4.4e-204 714.5 394 89.6
Thhalv10028714m.g Eutrema salsugineum HOM05D004508 ORTHO05D005180 1.4e-202 709.5 394 89.3
BolC3t15891H Brassica oleracea HOM05D004508 ORTHO05D005180 9.4e-199 696.8 390 89.0
BcaC01g04604 Brassica carinata HOM05D004508 ORTHO05D005180 1.4e-197 693.0 394 88.3
Aa31LG11G5140 Aethionema arabicum HOM05D004508 ORTHO05D005180 1.5e-183 646.4 402 79.4
Aa31LG9G10340 Aethionema arabicum HOM05D004508 ORTHO05D005180 1.2e-182 643.3 402 79.1
C03p35810 Brassica napus HOM05D004508 ORTHO05D005180 1.2e-180 636.7 349 91.1
Aa31LG11G5170 Aethionema arabicum HOM05D004508 ORTHO05D005180 1.3e-179 633.3 414 76.3
Cpa.g.sc29.91 Carica papaya HOM05D004508 ORTHO05D005180 2.8e-158 562.4 373 72.9
Dinv37763 Davidia involucrata HOM05D004508 ORTHO05D005180 4.9e-155 551.6 379 72.6
Gohir.A12G221000 Gossypium hirsutum HOM05D004508 ORTHO05D005180 1.1e-154 550.4 376 70.5
Prupe.5G079500 Prunus persica HOM05D004508 ORTHO05D005180 4.1e-154 548.5 405 68.4
Gohir.D12G223300 Gossypium hirsutum HOM05D004508 ORTHO05D005180 5.4e-154 548.1 378 70.1
Gorai.008G239600 Gossypium raimondii HOM05D004508 ORTHO05D005180 2.1e-153 546.2 378 69.8
Duzib205G1463 Durio zibethinus HOM05D004508 ORTHO05D005180 1.0e-152 543.9 381 69.6
Thecc.03G261800 Theobroma cacao HOM05D004508 ORTHO05D005180 6.6e-152 541.2 388 69.6
CiPaw.11G147500 Carya illinoinensis HOM05D004508 ORTHO05D005180 1.1e-151 540.4 381 69.8
MD04G1079500 Malus domestica HOM05D004508 ORTHO05D005180 7.3e-151 537.7 405 67.4
Nitab4.5_0003534g0110 Nicotiana tabacum HOM05D004508 ORTHO05D005180 1.2e-150 537.0 375 68.8
FvH4_5g00670 Fragaria vesca HOM05D004508 ORTHO05D005180 6.2e-150 534.6 379 68.3
Nitab4.5_0005465g0020 Nicotiana tabacum HOM05D004508 ORTHO05D005180 8.1e-150 534.3 381 68.2
Manes.01G073700 Manihot esculenta HOM05D004508 ORTHO05D005180 1.4e-149 533.5 385 68.3
Hund14651 Selenicereus undatus HOM05D004508 ORTHO05D005180 1.4e-149 533.5 379 69.7
CANSAT21G2188 Cannabis sativa HOM05D004508 ORTHO05D005180 1.8e-149 533.1 393 68.2
FAN08G3098 Fragaria x ananassa HOM05D004508 ORTHO05D005180 1.8e-149 533.1 405 65.2
TAR374G1167 Trochodendron aralioides HOM05D004508 ORTHO05D005180 4.0e-149 531.9 372 70.7
FAN18G1402 Fragaria x ananassa HOM05D004508 ORTHO05D005180 5.2e-149 531.6 379 68.1
Eucgr.D01989 Eucalyptus grandis HOM05D004508 ORTHO05D005180 8.9e-149 530.8 401 64.6
FAN13G3174 Fragaria x ananassa HOM05D004508 ORTHO05D005180 2.0e-148 529.6 379 68.1
PGR031G2216 Punica granatum HOM05D004508 ORTHO05D005180 3.4e-148 528.9 390 67.7
FAN04G0404 Fragaria x ananassa HOM05D004508 ORTHO05D005180 5.8e-148 528.1 372 68.8
RcHm_v2.0_Chr4g0419741 Rosa chinensis HOM05D004508 ORTHO05D005180 5.8e-148 528.1 402 66.2
vmacro14042 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 7.6e-148 527.7 374 69.5
CSS0042805 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 9.9e-148 527.3 384 67.2
Rhsim07G0101600 Rhododendron simsii HOM05D004508 ORTHO05D005180 9.9e-148 527.3 380 68.2
Hma1.2p1_0108F.1_g051860 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 4.9e-147 525.0 367 70.0
RcHm_v2.0_Chr7g0201591 Rosa chinensis HOM05D004508 ORTHO05D005180 6.4e-147 524.6 402 65.9
Actinidia27434 Actinidia chinensis HOM05D004508 ORTHO05D005180 3.2e-146 522.3 399 64.9
GSVIVG01004911001 Vitis vinifera HOM05D004508 ORTHO05D005180 3.2e-146 522.3 373 69.7
Nitab4.5_0007591g0010 Nicotiana tabacum HOM05D004508 ORTHO05D005180 4.1e-146 521.9 375 67.2
QL12p014971 Quercus lobata HOM05D004508 ORTHO05D005180 4.1e-146 521.9 402 66.2
Hma1.2p1_1654F.1_g295900 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 7.1e-146 521.2 391 65.7
CSS0027133 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 2.1e-145 519.6 373 68.4
Solyc08g079470.3 Solanum lycopersicum HOM05D004508 ORTHO05D005180 2.1e-145 519.6 386 65.5
Haze_02980 Corylus avellana HOM05D004508 ORTHO05D005180 1.7e-144 516.5 408 65.2
Atru.chr9.1431 Acer truncatum HOM05D004508 ORTHO05D005180 3.0e-144 515.8 395 66.1
Medtr3g078637 Medicago truncatula HOM05D004508 ORTHO05D005180 3.9e-144 515.4 400 63.8
PGSC0003DMG400003935 Solanum tuberosum HOM05D004508 ORTHO05D005180 3.9e-144 515.4 369 66.9
ClCG10G003140 Citrullus lanatus HOM05D004508 ORTHO05D005180 6.6e-144 514.6 383 66.6
Ciclev10020216m.g Citrus clementina HOM05D004508 ORTHO05D005180 1.1e-143 513.8 409 65.0
Gorai.003G166400 Gossypium raimondii HOM05D004508 ORTHO05D005180 4.3e-143 511.9 381 67.2
Sopen08g027840 Solanum pennellii HOM05D004508 ORTHO05D005180 4.3e-143 511.9 369 66.9
EL10Ac5g12616 Beta vulgaris HOM05D004508 ORTHO05D005180 5.6e-143 511.5 371 67.4
Sed0020035 Sechium edule HOM05D004508 ORTHO05D005180 9.6e-143 510.8 380 66.8
arahy.Tifrunner.gnm1.ann1.CN31X8 Arachis hypogaea HOM05D004508 ORTHO05D005180 2.1e-142 509.6 372 66.1
arahy.Tifrunner.gnm1.ann1.VMS6QR Arachis hypogaea HOM05D004508 ORTHO05D005180 2.1e-142 509.6 372 66.1
Lj2g0024595 Lotus japonicus HOM05D004508 ORTHO05D005180 2.8e-142 509.2 379 65.7
PSO782G0229 Papaver somniferum HOM05D004508 ORTHO05D005180 2.8e-142 509.2 371 66.6
Sc07g0009440 Simmondsia chinensis HOM05D004508 ORTHO05D005180 2.8e-142 509.2 406 64.8
HanXRQChr17g0549071 Helianthus annuus HOM05D004508 ORTHO05D005180 4.7e-142 508.4 377 66.6
CsaV3_3G003200 Cucumis sativus L. HOM05D004508 ORTHO05D005180 1.1e-141 507.3 382 65.4
MSTRG.12061 Avicennia marina HOM05D004508 ORTHO05D005180 1.4e-141 506.9 379 66.2
TWI60G0362 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 1.8e-141 506.5 380 65.8
CAN.G630.82 Capsicum annuum HOM05D004508 ORTHO05D005180 3.1e-141 505.8 377 64.2
Potri.001G117700 Populus trichocarpa HOM05D004508 ORTHO05D005180 6.8e-141 504.6 389 64.8
TWI81G0341 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 1.2e-140 503.8 374 66.6
Ca_16218_v3 Cicer arietinum L. HOM05D004508 ORTHO05D005180 2.6e-140 502.7 397 63.7
Glyma.11G029800 Glycine max HOM05D004508 ORTHO05D005180 2.6e-140 502.7 396 62.4
Ah.12g058230 Amaranthus hybridus HOM05D004508 ORTHO05D005180 5.8e-140 501.5 382 63.9
Lsat_1_v5_gn_3_3920 Lactuca sativa HOM05D004508 ORTHO05D005180 5.8e-140 501.5 377 65.5
SGA_v2.0_scaffold25G11118 Striga asiatica HOM05D004508 ORTHO05D005180 1.3e-139 500.4 388 63.1
SGA_v2.0_scaffold146G36178 Striga asiatica HOM05D004508 ORTHO05D005180 4.9e-139 498.4 388 63.4
Lj8C255T7 Lonicera japonica HOM05D004508 ORTHO05D005180 4.2e-138 495.4 384 65.4
SalBow5G2183 Salvia bowleyana HOM05D004508 ORTHO05D005180 1.2e-137 493.8 376 65.4
SalBow5G3960 Salvia bowleyana HOM05D004508 ORTHO05D005180 1.6e-137 493.4 376 65.2
Cc08_g13230 Coffea canephora HOM05D004508 ORTHO05D005180 6.0e-137 491.5 373 65.1
C07p28450 Brassica napus HOM05D004508 ORTHO05D005180 2.3e-136 489.6 260 91.5
Peaxi162Scf00271g00023 Petunia axillaris HOM05D004508 ORTHO05D005180 1.1e-135 487.3 378 64.0
Phvul.002G060100 Phaseolus vulgaris HOM05D004508 ORTHO05D005180 9.6e-135 484.2 379 62.3
CDE04G2826 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 3.1e-133 479.2 368 63.3
Lalb_Chr25g0283101 Lupinus albus HOM05D004508 ORTHO05D005180 3.4e-132 475.7 369 62.9
COL.COLO4_23880 Corchorus olitorius HOM05D004508 ORTHO05D005180 1.3e-131 473.8 388 62.4
PSO478G4546 Papaver somniferum HOM05D004508 ORTHO05D005180 2.9e-131 472.6 441 55.8
ECA246G1898 Erigeron canadensis HOM05D004508 ORTHO05D005180 4.2e-130 468.8 383 60.3
Lj4g0011407 Lotus japonicus HOM05D004508 ORTHO05D005180 2.3e-128 463.0 377 62.1
AUR62010510 Chenopodium quinoa HOM05D004508 ORTHO05D005180 3.9e-128 462.2 379 61.7
A03p29560 Brassica napus HOM05D004508 ORTHO05D005180 2.5e-127 459.5 268 84.7
VMungo1215G0237 Vigna mungo HOM05D004508 ORTHO05D005180 3.3e-127 459.1 362 62.4
ATR0757G012 Amborella trichopoda HOM05D004508 ORTHO05D005180 5.6e-127 458.4 432 57.4
ECA234G2416 Erigeron canadensis HOM05D004508 ORTHO05D005180 1.3e-126 457.2 374 60.7
Os06g0134800 Oryza sativa ssp. japonica HOM05D004508 ORTHO05D005180 3.6e-126 455.7 385 59.0
BolC7t43385H Brassica oleracea HOM05D004508 ORTHO05D005180 4.0e-125 452.2 240 90.4
BcaC06g34438 Brassica carinata HOM05D004508 ORTHO05D005180 6.9e-125 451.4 241 90.0
Oeu016511.2 Olea europaea HOM05D004508 ORTHO05D005180 2.0e-124 449.9 392 59.4
Zm00001eb377920 Zea mays HOM05D004508 ORTHO05D005180 2.2e-123 446.4 381 59.3
HPP92_014947 Vanilla planifolia HOM05D004508 ORTHO05D005180 1.8e-120 436.8 387 58.1
HPP92_014982 Vanilla planifolia HOM05D004508 ORTHO05D005180 1.8e-120 436.8 387 58.1
Sabra01G0090400 Salix brachista HOM05D004508 ORTHO05D005180 7.4e-119 431.4 393 57.3
unitig_8.g3903 Utricularia gibba HOM05D004508 ORTHO05D005180 1.7e-115 420.2 368 57.3
SEGI_30484 Sequoiadendron giganteum HOM05D004508 ORTHO05D005180 2.1e-113 413.3 381 55.1
AagrBONN_evm.TU.Sc2ySwM_344.736 Anthoceros agrestis HOM05D004508 ORTHO05D005180 2.3e-112 409.8 378 53.4
Nn2g12338 Nelumbo nucifera HOM05D004508 ORTHO05D005180 2.3e-112 409.8 293 68.6
Psat1g081320 Pisum sativum HOM05D004508 ORTHO05D005180 1.3e-110 404.1 280 69.6
Psat5g109880 Pisum sativum HOM05D004508 ORTHO05D005180 4.8e-110 402.1 291 67.4
Mapoly0014s0047 Marchantia polymorpha HOM05D004508 ORTHO05D005180 8.2e-110 401.4 376 52.9
MBI04_g30221_MAGBIO Magnolia biondii HOM05D004508 ORTHO05D005180 6.9e-109 398.3 599 40.9
SMO165G0061 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 1.1e-106 391.0 368 52.7
Pp3c14_15790 Physcomitrium patens HOM05D004508 ORTHO05D005180 5.5e-106 388.7 378 53.2
Pp3c2_10920 Physcomitrium patens HOM05D004508 ORTHO05D005180 6.1e-105 385.2 392 49.2
SMO230G0075 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 7.9e-105 384.8 360 50.0
Dinv39078 Davidia involucrata HOM05D004508 ORTHO05D005180 3.9e-104 382.5 348 58.9
CiPaw.12G105000 Carya illinoinensis HOM05D004508 ORTHO05D005180 5.3e-101 372.1 383 53.8
AagrBONN_evm.TU.Sc2ySwM_344.739 Anthoceros agrestis HOM05D004508 ORTHO05D005180 3.6e-97 359.4 372 50.8
Glyma.01G212000 Glycine max HOM05D004508 ORTHO05D005180 1.5e-92 344.0 263 63.5
Oeu022318.1 Olea europaea HOM05D004508 ORTHO05D005180 1.0e-91 341.3 249 69.1
VMungo1215G2974 Vigna mungo HOM05D004508 ORTHO05D005180 1.2e-89 334.3 256 62.5
Gohir.D03G157900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 5.2e-88 328.9 257 65.8
CBR_g46688 Chara braunii HOM05D004508 ORTHO05D005180 4.4e-87 325.9 393 45.5
Migut.A00834 Erythranthe guttata HOM05D004508 ORTHO05D005180 5.7e-87 325.5 276 60.9
AUR62017391 Chenopodium quinoa HOM05D004508 ORTHO05D005180 6.3e-86 322.0 241 64.7
PSO017G0573 Papaver somniferum HOM05D004508 ORTHO05D005180 7.0e-85 318.5 248 62.5
Eucgr.D02019 Eucalyptus grandis HOM05D004508 ORTHO05D005180 1.7e-78 297.4 361 44.3
MELO3C013985.2 Cucumis melo HOM05D004508 ORTHO05D005180 1.8e-72 277.3 192 66.7
Gohir.A03G011900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 3.1e-61 240.0 278 51.4
TPR.G214 Trifolium pratense HOM05D004508 ORTHO05D005180 8.6e-59 231.9 158 71.5
Lsat_1_v5_gn_3_76480 Lactuca sativa HOM05D004508 ORTHO05D005180 5.9e-52 209.1 204 56.4
AagrBONN_evm.TU.Sc2ySwM_344.731 Anthoceros agrestis HOM05D004508 ORTHO05D005180 1.0e-51 208.4 212 49.5
Duzib084G0179 Durio zibethinus HOM05D004508 ORTHO05D005180 9.2e-45 185.3 163 59.5
vmacro17466 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 5.6e-42 176.0 127 65.4
BolC6t40022H Brassica oleracea HOM05D004508 ORTHO05D005180 8.1e-41 172.2 90 88.9
MELO3C021762.2 Cucumis melo HOM05D004508 ORTHO05D005180 3.1e-40 170.2 114 67.5
VMungo1215G1224 Vigna mungo HOM05D004508 ORTHO05D005180 2.6e-39 167.2 135 61.5
MCO07G558 Micromonas commoda HOM05D004508 ORTHO05D005180 4.6e-36 156.4 404 32.7
BcaC06g35234 Brassica carinata HOM05D004508 ORTHO05D005180 1.5e-34 151.4 74 91.9
PRCOL_00002067 Prasinoderma coloniale HOM05D004508 ORTHO05D005180 4.7e-33 146.4 363 31.4
CSS0024785 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 1.1e-29 135.2 106 59.4
BolC7t43387H Brassica oleracea HOM05D004508 ORTHO05D005180 2.7e-28 130.6 93 74.2
Cre10.g459000 Chlamydomonas reinhardtii HOM05D004508 ORTHO05D005180 4.6e-28 129.8 301 31.2
C03p35830 Brassica napus HOM05D004508 ORTHO05D005180 6.6e-27 125.9 93 71.0
C07p28470 Brassica napus HOM05D004508 ORTHO05D005180 7.3e-26 122.5 93 69.9
Nn8g40647 Nelumbo nucifera HOM05D004508 ORTHO05D005180 2.4e-24 117.5 171 42.1
Cfa023844 Carpinus fangiana HOM05D004508 ORTHO05D005180 5.1e-19 99.8 282 28.7
BolC3t15892H Brassica oleracea HOM05D004508 ORTHO05D005180 1.1e-16 92.0 52 88.5
PRCOL_00001266 Prasinoderma coloniale HOM05D004508 ORTHO05D005180 1.1e-16 92.0 375 28.0
SGA_v2.0_scaffold120G32815 Striga asiatica HOM05D004508 ORTHO05D005180 1.2e-15 88.6 85 55.3
BcaC06g34436 Brassica carinata HOM05D004508 ORTHO05D005180 1.5e-15 88.2 55 81.8
BolC3t15893H Brassica oleracea HOM05D004508 ORTHO05D005180 3.8e-14 83.6 52 76.9
CDE04G3100 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 3.8e-06 57.0 63 49.2


User provided reference genes

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