Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 4.3e-67 258.1 151 100.0
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 4.3e-67 258.1 151 100.0
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 3.2e-62 241.9 151 88.1
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 3.9e-60 235.0 151 88.7
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 5.1e-60 234.6 151 85.4
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 1.1e-59 233.4 151 88.1
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 5.6e-59 231.1 151 84.8
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 7.4e-59 230.7 151 84.1
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 9.6e-59 230.3 152 92.8
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 2.1e-58 229.2 155 91.0
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 2.1e-58 229.2 155 91.0
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 5.8e-56 221.1 151 83.4
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 1.1e-54 216.9 151 79.5
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 1.0e-52 210.3 151 75.5
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 1.3e-52 209.9 151 75.5
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.3e-52 209.9 151 76.8
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 1.3e-52 209.9 151 76.2
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 1.8e-52 209.5 151 76.2
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 2.3e-52 209.1 151 76.8
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 2.3e-52 209.1 151 75.5
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 2.3e-52 209.1 151 75.5
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 3.0e-52 208.8 151 74.8
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 3.0e-52 208.8 151 74.8
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.9e-52 208.4 151 75.5
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 3.9e-52 208.4 151 76.2
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 5.1e-52 208.0 151 75.5
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 5.1e-52 208.0 151 74.2
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 6.7e-52 207.6 151 74.8
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 6.7e-52 207.6 151 76.2
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 8.7e-52 207.2 151 74.8
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 1.1e-51 206.8 151 74.8
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.5e-51 206.5 151 74.8
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.5e-51 206.5 151 74.8
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.5e-51 206.5 151 74.8
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 2.5e-51 205.7 151 74.8
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 3.3e-51 205.3 151 74.2
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 4.3e-51 204.9 151 75.5
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 4.3e-51 204.9 151 73.5
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 5.6e-51 204.5 151 74.2
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 5.6e-51 204.5 151 74.2
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 7.4e-51 204.1 164 78.0
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 9.6e-51 203.8 151 74.2
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 1.3e-50 203.4 152 75.0
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 1.6e-50 203.0 151 73.5
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 2.1e-50 202.6 151 72.8
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 2.1e-50 202.6 151 72.8
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 2.8e-50 202.2 151 72.8
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 2.8e-50 202.2 151 72.8
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 3.7e-50 201.8 147 76.2
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 3.7e-50 201.8 151 74.2
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 3.7e-50 201.8 151 74.2
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 8.1e-50 200.7 151 73.5
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 1.4e-49 199.9 151 73.5
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 1.8e-49 199.5 151 72.2
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 2.4e-49 199.1 151 73.5
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 3.1e-49 198.7 151 71.5
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 3.1e-49 198.7 151 71.5
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 5.3e-49 198.0 151 72.8
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 5.3e-49 198.0 151 71.5
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 9.0e-49 197.2 160 75.6
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 1.2e-48 196.8 151 70.9
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 1.2e-48 196.8 151 71.5
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 1.5e-48 196.4 150 72.7
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 1.5e-48 196.4 151 70.9
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 1.5e-48 196.4 151 72.2
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 2.0e-48 196.1 152 71.1
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 2.0e-48 196.1 151 70.9
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 2.6e-48 195.7 150 72.7
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 3.4e-48 195.3 152 70.4
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 4.5e-48 194.9 150 72.0
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 4.5e-48 194.9 152 70.4
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 7.6e-48 194.1 151 69.5
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 1.7e-47 193.0 151 72.2
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.7e-47 193.0 151 72.2
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 2.9e-47 192.2 151 78.1
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 2.9e-47 192.2 151 71.5
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 2.9e-47 192.2 151 72.8
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 3.8e-47 191.8 150 70.7
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 3.8e-47 191.8 150 70.7
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 6.5e-47 191.0 147 74.1
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 8.4e-47 190.7 151 70.9
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 8.4e-47 190.7 151 70.9
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 8.4e-47 190.7 151 68.9
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 1.1e-46 190.3 151 68.9
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 1.1e-46 190.3 151 68.9
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 1.4e-46 189.9 150 71.3
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.5e-46 189.1 151 68.9
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 3.2e-46 188.7 154 74.7
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 4.2e-46 188.3 152 72.4
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 5.5e-46 188.0 150 70.0
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 7.1e-46 187.6 151 69.5
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 9.3e-46 187.2 151 70.9
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 9.3e-46 187.2 151 70.9
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 9.3e-46 187.2 151 68.9
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 1.6e-45 186.4 151 68.2
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 1.6e-45 186.4 151 66.9
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 4.6e-45 184.9 151 69.5
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 7.9e-45 184.1 151 67.5
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 1.0e-44 183.7 176 66.5
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 1.0e-44 183.7 150 68.7
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 2.3e-44 182.6 151 68.9
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 1.9e-43 179.5 168 66.1
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 7.4e-43 177.6 165 61.8
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 6.3e-42 174.5 151 63.6
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 1.8e-41 172.9 149 69.1
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 1.8e-41 172.9 151 64.9
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 1.8e-41 172.9 185 56.8
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 1.7e-39 166.4 147 66.0
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 2.2e-39 166.0 151 61.6
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 2.9e-39 165.6 151 60.3
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 3.8e-39 165.2 147 66.7
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 9.3e-38 160.6 125 72.8
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 1.6e-37 159.8 125 71.2
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 2.7e-37 159.1 151 57.0
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 8.7e-36 154.1 145 63.4
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 3.3e-35 152.1 127 68.5
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 3.3e-35 152.1 121 71.1
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 5.7e-35 151.4 181 49.7
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 7.4e-35 151.0 151 55.0
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 1.3e-34 150.2 129 64.3
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.1e-33 147.1 128 66.4
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 1.8e-33 146.4 125 65.6
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 9.1e-33 144.1 138 63.0
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 9.1e-33 144.1 149 55.0
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 1.0e-31 140.6 131 70.2
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 6.5e-31 137.9 125 64.0
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 1.4e-30 136.7 109 68.8
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 5.5e-30 134.8 155 56.8
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 7.2e-30 134.4 164 56.7
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 9.4e-30 134.0 127 62.2
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 8.8e-28 127.5 80 85.0
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.1e-27 127.1 80 85.0
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 3.3e-27 125.6 79 86.1
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.7e-26 122.1 80 81.2
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.7e-26 122.1 76 86.8
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 4.8e-26 121.7 131 55.7
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 8.2e-26 120.9 80 80.0
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 5.9e-24 114.8 148 50.0
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 7.7e-24 114.4 69 85.5
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 1.0e-23 114.0 150 51.3
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 5.0e-23 111.7 69 84.1
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 7.9e-21 104.4 97 61.9
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 5.2e-20 101.7 97 61.9
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 6.7e-20 101.3 144 46.5
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 5.3e-17 91.7 93 59.1
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 5.3e-17 91.7 93 59.1
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 1.2e-16 90.5 69 71.0
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 3.8e-15 85.5 82 59.8
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 2.5e-14 82.8 57 75.4
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 1.6e-13 80.1 90 54.4
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 2.7e-13 79.3 82 56.1
C05p45820 Brassica napus HOM05D004301 ORTHO05D005124 6.1e-13 78.2 50 76.0
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 6.1e-13 78.2 42 85.7
C05p45830 Brassica napus HOM05D004301 ORTHO05D005124 1.0e-12 77.4 47 80.9
BolC5t33302H Brassica oleracea HOM05D004301 ORTHO05D005124 1.0e-12 77.4 50 76.0
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 4.0e-12 75.5 149 34.9
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 1.5e-11 73.6 86 55.8
A06p38190 Brassica napus HOM05D004301 ORTHO05D005124 3.3e-11 72.4 104 47.1
BraA06t26734Z Brassica rapa HOM05D004301 ORTHO05D005124 3.3e-11 72.4 104 47.1
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 1.4e-09 67.0 41 75.6
A07p00860 Brassica napus HOM05D004301 ORTHO05D005124 3.5e-08 62.4 37 83.8
BraA07t27884Z Brassica rapa HOM05D004301 ORTHO05D005124 3.5e-08 62.4 37 83.8
BcaB02g10679 Brassica carinata HOM05D004301 ORTHO05D005124 2.9e-07 59.3 44 72.7
BraA04t17040Z Brassica rapa HOM05D054022 ORTHO05D005124 4.2e-06 55.5 30 93.3
BraA09t40460Z Brassica rapa HOM05D054022 ORTHO05D005124 4.2e-06 55.5 30 93.3


User provided reference genes

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