Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p25970 Brassica napus HOM05D005665 ORTHO05D007230 1.2e-199 699.5 336 100.0
BraA09t38164Z Brassica rapa HOM05D005665 ORTHO05D007230 1.2e-199 699.5 336 100.0
BolC9t56129H Brassica oleracea HOM05D005665 ORTHO05D007230 9.9e-197 689.9 336 98.5
BcaC04g21346 Brassica carinata HOM05D005665 ORTHO05D007230 1.9e-195 685.6 336 97.9
C09p32940 Brassica napus HOM05D005665 ORTHO05D007230 1.9e-195 685.6 336 97.9
Sp6g04030 Schrenkiella parvula HOM05D005665 ORTHO05D007230 2.8e-183 645.2 335 91.3
SpUn0051_0010 Schrenkiella parvula HOM05D005665 ORTHO05D007230 2.8e-183 645.2 335 91.3
BcaB01g01848 Brassica carinata HOM05D005665 ORTHO05D007230 3.6e-183 644.8 339 92.3
Carub.0006s3285 Capsella rubella HOM05D005665 ORTHO05D007230 7.1e-179 630.6 330 90.0
Thhalv10028789m.g Eutrema salsugineum HOM05D005665 ORTHO05D007230 9.3e-179 630.2 339 88.2
AT4G04930 Arabidopsis thaliana HOM05D005665 ORTHO05D007230 1.2e-178 629.8 329 90.3
THA.LOC104812890 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 1.7e-172 609.4 332 85.8
THA.LOC104806290 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 1.4e-171 606.3 326 85.0
Cpa.g.sc27.60 Carica papaya HOM05D005665 ORTHO05D007230 3.9e-169 598.2 332 85.2
FAN25G3768 Fragaria x ananassa HOM05D005665 ORTHO05D007230 1.4e-166 589.7 326 85.0
MD10G1295900 Malus domestica HOM05D005665 ORTHO05D007230 1.4e-166 589.7 324 84.3
FvH4_3g04930 Fragaria vesca HOM05D005665 ORTHO05D007230 6.9e-166 587.4 326 84.7
FAN11G2254 Fragaria x ananassa HOM05D005665 ORTHO05D007230 6.9e-166 587.4 326 84.7
Prupe.4G044600 Prunus persica HOM05D005665 ORTHO05D007230 9.0e-166 587.0 329 84.2
FAN21G3875 Fragaria x ananassa HOM05D005665 ORTHO05D007230 1.2e-165 586.6 326 84.4
Thecc.06G190100 Theobroma cacao HOM05D005665 ORTHO05D007230 2.0e-165 585.9 327 83.8
RcHm_v2.0_Chr5g0008091 Rosa chinensis HOM05D005665 ORTHO05D007230 2.6e-165 585.5 326 84.0
Potri.011G050800 Populus trichocarpa HOM05D005665 ORTHO05D007230 3.4e-165 585.1 333 82.0
TWI38G1053 Tripterygium wilfordii HOM05D005665 ORTHO05D007230 5.8e-165 584.3 336 82.4
Duzib192G0757 Durio zibethinus HOM05D005665 ORTHO05D007230 7.6e-165 583.9 327 83.5
FAN16G3723 Fragaria x ananassa HOM05D005665 ORTHO05D007230 9.9e-165 583.6 326 84.0
Dinv07542 Davidia involucrata HOM05D005665 ORTHO05D007230 1.7e-164 582.8 323 83.9
CSS0000582 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 3.8e-164 581.6 314 85.4
Manes.16G026000 Manihot esculenta HOM05D005665 ORTHO05D007230 3.8e-164 581.6 329 82.7
Hma1.2p1_0126F.1_g059290 Hydrangea macrophylla HOM05D005665 ORTHO05D007230 4.9e-164 581.3 321 84.1
Duzib160G0567 Durio zibethinus HOM05D005665 ORTHO05D007230 8.4e-164 580.5 327 83.8
Actinidia05618 Actinidia chinensis HOM05D005665 ORTHO05D007230 1.1e-163 580.1 316 85.8
Lj2A287T49 Lonicera japonica HOM05D005665 ORTHO05D007230 1.1e-163 580.1 322 84.2
CiPaw.09G058000 Carya illinoinensis HOM05D005665 ORTHO05D007230 3.2e-163 578.6 323 83.6
Actinidia01890 Actinidia chinensis HOM05D005665 ORTHO05D007230 5.5e-163 577.8 316 85.4
Sabra11G0034800 Salix brachista HOM05D005665 ORTHO05D007230 5.5e-163 577.8 333 81.1
CiPaw.10G047200 Carya illinoinensis HOM05D005665 ORTHO05D007230 7.1e-163 577.4 324 83.0
Gohir.A06G126400 Gossypium hirsutum HOM05D005665 ORTHO05D007230 2.7e-162 575.5 326 82.2
Manes.17G043900 Manihot esculenta HOM05D005665 ORTHO05D007230 2.7e-162 575.5 337 80.4
Eucgr.E03124 Eucalyptus grandis HOM05D005665 ORTHO05D007230 3.5e-162 575.1 329 81.2
Gorai.011G026500 Gossypium raimondii HOM05D005665 ORTHO05D007230 4.6e-162 574.7 327 81.0
Aa31LG9G9560 Aethionema arabicum HOM05D005665 ORTHO05D007230 7.9e-162 573.9 333 81.1
MELO3C002591.2 Cucumis melo HOM05D005665 ORTHO05D007230 7.9e-162 573.9 314 84.1
Gohir.A10G024500 Gossypium hirsutum HOM05D005665 ORTHO05D007230 1.0e-161 573.5 327 80.4
TAR627G0371 Trochodendron aralioides HOM05D005665 ORTHO05D007230 1.3e-161 573.2 325 80.9
CsaV3_1G012180 Cucumis sativus L. HOM05D005665 ORTHO05D007230 1.8e-161 572.8 320 83.4
QL05p039803 Quercus lobata HOM05D005665 ORTHO05D007230 2.3e-161 572.4 321 82.6
ClCG03G005940 Citrullus lanatus HOM05D005665 ORTHO05D007230 3.0e-161 572.0 321 83.2
Peaxi162Scf00461g00010 Petunia axillaris HOM05D005665 ORTHO05D007230 3.0e-161 572.0 326 82.2
Nitab4.5_0004775g0030 Nicotiana tabacum HOM05D005665 ORTHO05D007230 3.9e-161 571.6 337 81.0
Cfa000422 Carpinus fangiana HOM05D005665 ORTHO05D007230 6.7e-161 570.9 324 82.1
CANSAT35G1141 Cannabis sativa HOM05D005665 ORTHO05D007230 1.1e-160 570.1 324 82.4
Ciclev10015896m.g Citrus clementina HOM05D005665 ORTHO05D007230 1.1e-160 570.1 326 81.0
Cc02_g13170 Coffea canephora HOM05D005665 ORTHO05D007230 2.5e-160 568.9 320 82.5
Gohir.D06G131200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 2.5e-160 568.9 327 82.3
Nitab4.5_0003942g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 3.3e-160 568.5 332 80.7
Nitab4.5_0013250g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 5.6e-160 567.8 327 82.0
Aqoxy4G01024 Aquilegia oxysepala HOM05D005665 ORTHO05D007230 1.3e-159 566.6 324 79.3
PSO210G3809 Papaver somniferum HOM05D005665 ORTHO05D007230 1.3e-159 566.6 316 81.0
PSO832G3519 Papaver somniferum HOM05D005665 ORTHO05D007230 1.3e-159 566.6 316 81.0
Gohir.D10G025200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 2.8e-159 565.5 316 82.3
Peaxi162Scf00530g00218 Petunia axillaris HOM05D005665 ORTHO05D007230 2.8e-159 565.5 330 80.0
TAR626G1890 Trochodendron aralioides HOM05D005665 ORTHO05D007230 2.8e-159 565.5 316 81.6
PGSC0003DMG400022827 Solanum tuberosum HOM05D005665 ORTHO05D007230 3.7e-159 565.1 327 82.0
Gorai.010G153100 Gossypium raimondii HOM05D005665 ORTHO05D007230 6.2e-159 564.3 317 82.6
Solyc10g009030.4 Solanum lycopersicum HOM05D005665 ORTHO05D007230 6.2e-159 564.3 327 81.3
Migut.M01155 Erythranthe guttata HOM05D005665 ORTHO05D007230 1.4e-158 563.1 336 79.8
Sopen10g004810 Solanum pennellii HOM05D005665 ORTHO05D007230 1.4e-158 563.1 327 81.3
Nitab4.5_0005615g0050 Nicotiana tabacum HOM05D005665 ORTHO05D007230 3.1e-158 562.0 318 82.7
PGR042G0011 Punica granatum HOM05D005665 ORTHO05D007230 3.1e-158 562.0 331 78.2
Lalb_Chr18g0059701 Lupinus albus HOM05D005665 ORTHO05D007230 9.0e-158 560.5 318 81.8
Nn1g06596 Nelumbo nucifera HOM05D005665 ORTHO05D007230 9.0e-158 560.5 321 79.4
SGA_v2.0_scaffold22G09724 Striga asiatica HOM05D005665 ORTHO05D007230 9.0e-158 560.5 336 79.5
GSVIVG01002020001 Vitis vinifera HOM05D005665 ORTHO05D007230 9.0e-158 560.5 320 82.8
MSTRG.7328 Avicennia marina HOM05D005665 ORTHO05D007230 1.5e-157 559.7 336 78.9
AUR62014800 Chenopodium quinoa HOM05D005665 ORTHO05D007230 1.5e-157 559.7 324 79.9
ClCG01G022870 Citrullus lanatus HOM05D005665 ORTHO05D007230 2.0e-157 559.3 317 83.0
Sc05g0007780 Simmondsia chinensis HOM05D005665 ORTHO05D007230 2.0e-157 559.3 315 82.2
SalBow7G1156 Salvia bowleyana HOM05D005665 ORTHO05D007230 2.6e-157 558.9 324 80.2
COL.COLO4_31496 Corchorus olitorius HOM05D005665 ORTHO05D007230 5.8e-157 557.8 299 85.6
AUR62016991 Chenopodium quinoa HOM05D005665 ORTHO05D007230 7.6e-157 557.4 324 79.9
Medtr2g013070 Medicago truncatula HOM05D005665 ORTHO05D007230 1.0e-156 557.0 327 80.7
Sed0027057 Sechium edule HOM05D005665 ORTHO05D007230 1.7e-156 556.2 311 82.6
Nn1g04043 Nelumbo nucifera HOM05D005665 ORTHO05D007230 2.2e-156 555.8 310 81.3
Atru.chr10.1913 Acer truncatum HOM05D005665 ORTHO05D007230 3.8e-156 555.1 329 79.3
Oeu053967.2 Olea europaea HOM05D005665 ORTHO05D007230 6.5e-156 554.3 322 79.8
TPR.G36824 Trifolium pratense HOM05D005665 ORTHO05D007230 1.4e-155 553.1 315 81.6
Lj6g0021271 Lotus japonicus HOM05D005665 ORTHO05D007230 2.5e-155 552.4 325 80.0
Glyma.15G072800 Glycine max HOM05D005665 ORTHO05D007230 4.2e-155 551.6 329 79.0
Os02g0639600 Oryza sativa ssp. japonica HOM05D005665 ORTHO05D007230 9.3e-155 550.4 321 78.8
VMungo0540G1872 Vigna mungo HOM05D005665 ORTHO05D007230 2.7e-154 548.9 328 79.3
Phvul.006G187100 Phaseolus vulgaris HOM05D005665 ORTHO05D007230 3.5e-154 548.5 328 79.3
Ca_00306_v3 Cicer arietinum L. HOM05D005665 ORTHO05D007230 4.6e-154 548.1 310 81.6
EL10Ac8g20360 Beta vulgaris HOM05D005665 ORTHO05D007230 1.8e-153 546.2 314 79.6
Sed0024618 Sechium edule HOM05D005665 ORTHO05D007230 5.1e-153 544.7 320 79.7
Psat1g206640 Pisum sativum HOM05D005665 ORTHO05D007230 6.7e-153 544.3 334 78.4
Haze_06494 Corylus avellana HOM05D005665 ORTHO05D007230 2.5e-152 542.3 382 69.4
SHI01876 Sapria himalayana HOM05D005665 ORTHO05D007230 4.8e-151 538.1 354 71.8
Zm00001eb075800 Zea mays HOM05D005665 ORTHO05D007230 4.8e-151 538.1 312 78.8
ATR0680G322 Amborella trichopoda HOM05D005665 ORTHO05D007230 3.1e-150 535.4 328 75.0
Glyma.13G240700 Glycine max HOM05D005665 ORTHO05D007230 9.0e-150 533.9 329 76.3
MBI18_g16999_MAGBIO Magnolia biondii HOM05D005665 ORTHO05D007230 5.9e-149 531.2 324 76.5
arahy.Tifrunner.gnm1.ann1.5IXZ6F Arachis hypogaea HOM05D005665 ORTHO05D007230 2.9e-148 528.9 331 75.2
arahy.Tifrunner.gnm1.ann1.C923ZL Arachis hypogaea HOM05D005665 ORTHO05D007230 8.5e-148 527.3 331 74.9
Lsat_1_v5_gn_1_126041 Lactuca sativa HOM05D005665 ORTHO05D007230 2.1e-146 522.7 312 77.9
Ah.09g237240 Amaranthus hybridus HOM05D005665 ORTHO05D007230 2.0e-144 516.2 305 78.7
SEGI_10058 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 8.2e-143 510.8 318 72.6
Eucgr.L02776 Eucalyptus grandis HOM05D005665 ORTHO05D007230 1.0e-140 503.8 277 82.7
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 1.8e-137 493.0 303 73.6
RhsimUnG0044900 Rhododendron simsii HOM05D005665 ORTHO05D007230 5.1e-137 491.5 280 81.8
Nitab4.5_0002158g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 8.2e-135 484.2 317 73.8
HPP92_021012 Vanilla planifolia HOM05D005665 ORTHO05D007230 1.2e-133 480.3 321 69.8
Mapoly0083s0054 Marchantia polymorpha HOM05D005665 ORTHO05D007230 1.7e-132 476.5 310 69.7
CAN.G413.22 Capsicum annuum HOM05D005665 ORTHO05D007230 5.0e-132 474.9 276 81.2
MD05G1314600 Malus domestica HOM05D005665 ORTHO05D007230 6.1e-130 468.0 333 68.5
SMO364G0702 Selaginella moellendorffii HOM05D005665 ORTHO05D007230 8.2e-127 457.6 308 66.6
Pp3c23_19370 Physcomitrium patens HOM05D005665 ORTHO05D007230 3.1e-126 455.7 346 61.0
Pp3c23_19371 Physcomitrium patens HOM05D005665 ORTHO05D007230 3.1e-126 455.7 346 61.0
DCAR_004082 Daucus carota HOM05D005665 ORTHO05D007230 2.6e-125 452.6 253 81.8
AagrBONN_evm.TU.Sc2ySwM_344.2491 Anthoceros agrestis HOM05D005665 ORTHO05D007230 5.0e-124 448.4 305 65.6
AagrBONN_evm.TU.Sc2ySwM_344.2084 Anthoceros agrestis HOM05D005665 ORTHO05D007230 1.2e-112 410.6 307 59.0
CSS0037689 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 3.3e-107 392.5 235 79.1
MCO04G319 Micromonas commoda HOM05D005665 ORTHO05D007230 4.5e-101 372.1 318 55.7
CDE02G1299 Ceratophyllum demersum HOM05D005665 ORTHO05D007230 6.8e-97 358.2 246 67.9
unitig_21.g20852 Utricularia gibba HOM05D005665 ORTHO05D007230 6.6e-92 341.7 215 72.6
PRCOL_00001033 Prasinoderma coloniale HOM05D005665 ORTHO05D007230 2.0e-88 330.1 315 50.5
Cfa021982 Carpinus fangiana HOM05D005665 ORTHO05D007230 4.0e-81 305.8 351 44.2
Haze_26717 Corylus avellana HOM05D005665 ORTHO05D007230 1.2e-69 267.7 360 39.7
Thecc.05G195100 Theobroma cacao HOM05D005665 ORTHO05D007230 1.3e-52 211.1 123 76.4
Dinv40542 Davidia involucrata HOM05D005665 ORTHO05D007230 3.8e-31 139.8 82 78.0
MELO3C007292.2 Cucumis melo HOM05D005665 ORTHO05D039877 5.5e-30 136.0 89 74.2
TAR629G1936 Trochodendron aralioides HOM05D000151 ORTHO05D000074 3.8e-23 113.2 84 69.0
BcaB05g23333 Brassica carinata HOM05D005665 ORTHO05D039877 5.0e-23 112.8 68 82.4
Zm00001eb175420 Zea mays HOM05D005665 ORTHO05D007230 1.7e-15 87.8 45 84.4
DCAR_004083 Daucus carota HOM05D000799 ORTHO05D000629 1.9e-14 84.3 49 73.5
Zm00001eb423550 Zea mays HOM05D005665 ORTHO05D007230 1.9e-14 84.3 41 87.8
Thecc.05G194800 Theobroma cacao HOM05D005665 ORTHO05D007230 1.1e-11 75.1 52 67.3
SEGI_41581 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 4.1e-09 66.6 57 54.4


User provided reference genes

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