Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p25950 Brassica napus HOM05D001170 ORTHO05D021581 4.8e-31 137.1 66 100.0
BcaC04g21350 Brassica carinata HOM05D001170 ORTHO05D006602 5.9e-13 77.0 35 97.1
A09p25960 Brassica napus HOM05D001170 ORTHO05D006602 5.9e-13 77.0 35 97.1
C09p32900 Brassica napus HOM05D001170 ORTHO05D006602 5.9e-13 77.0 35 97.1
BolC9t56125H Brassica oleracea HOM05D001170 ORTHO05D006602 5.9e-13 77.0 35 97.1
BraA09t38163Z Brassica rapa HOM05D001170 ORTHO05D006602 5.9e-13 77.0 35 97.1
BcaC09g51498 Brassica carinata HOM05D001170 ORTHO05D006602 2.3e-12 75.1 35 91.4
C03p36500 Brassica napus HOM05D001170 ORTHO05D006602 2.3e-12 75.1 35 91.4
BolC3t15963H Brassica oleracea HOM05D001170 ORTHO05D006602 2.3e-12 75.1 35 91.4
BcaB01g01849 Brassica carinata HOM05D001170 ORTHO05D006602 2.9e-12 74.7 35 88.6
A03p30250 Brassica napus HOM05D001170 ORTHO05D006602 3.9e-12 74.3 35 88.6
BraA03t12209Z Brassica rapa HOM05D001170 ORTHO05D006602 3.9e-12 74.3 35 88.6
Thhalv10028614m.g Eutrema salsugineum HOM05D001170 ORTHO05D006602 5.0e-12 73.9 35 88.6
Sp6g04010 Schrenkiella parvula HOM05D001170 ORTHO05D006602 5.0e-12 73.9 35 88.6
TWI38G1016 Tripterygium wilfordii HOM05D001170 ORTHO05D006602 2.5e-11 71.6 35 82.9
CARHR252590 Cardamine hirsuta HOM05D001170 ORTHO05D006602 3.3e-11 71.2 35 85.7
THA.LOC104812862 Tarenaya hassleriana HOM05D001170 ORTHO05D006602 3.3e-11 71.2 35 80.0
TWI38G1622 Tripterygium wilfordii HOM05D001170 ORTHO05D006602 3.3e-11 71.2 35 82.9
THA.LOC104806287 Tarenaya hassleriana HOM05D001170 ORTHO05D006602 4.3e-11 70.9 35 80.0
AT4G04950 Arabidopsis thaliana HOM05D001170 ORTHO05D006602 7.3e-11 70.1 35 82.9
AL6G48460 Arabidopsis lyrata HOM05D001170 ORTHO05D006602 9.5e-11 69.7 35 85.7
Aa31LG9G9540 Aethionema arabicum HOM05D001170 ORTHO05D006602 1.2e-10 69.3 35 80.0
BcaC02g08216 Brassica carinata HOM05D001170 ORTHO05D021581 1.2e-10 69.3 35 85.7
Carub.0006s3288 Capsella rubella HOM05D001170 ORTHO05D006602 1.6e-10 68.9 35 80.0
Cpa.g.sc27.48 Carica papaya HOM05D001170 ORTHO05D006602 2.8e-10 68.2 35 80.0
AT4G32580 Arabidopsis thaliana HOM05D001170 ORTHO05D006602 4.7e-10 67.4 35 80.0
BcaB01g05292 Brassica carinata HOM05D001170 ORTHO05D021581 6.1e-10 67.0 35 82.9
BolC3t13557H Brassica oleracea HOM05D000177 ORTHO05D021581 6.1e-10 67.0 35 82.9
Atru.chr10.1898 Acer truncatum HOM05D001170 ORTHO05D006602 8.0e-10 66.6 34 76.5
Duzib192G0182 Durio zibethinus HOM05D001170 ORTHO05D006602 1.4e-09 65.9 34 76.5
FvH4_3g09370 Fragaria vesca HOM05D001170 ORTHO05D006602 6.8e-09 63.5 36 72.2
FAN11G2442 Fragaria x ananassa HOM05D001170 ORTHO05D006602 6.8e-09 63.5 36 72.2
Manes.16G026500 Manihot esculenta HOM05D001170 ORTHO05D006602 6.8e-09 63.5 35 71.4
RcHm_v2.0_Chr5g0008221 Rosa chinensis HOM05D001170 ORTHO05D006602 6.8e-09 63.5 36 72.2
CiPaw.09G058800 Carya illinoinensis HOM05D001170 ORTHO05D006602 1.2e-08 62.8 35 71.4
Haze_06482 Corylus avellana HOM05D001170 ORTHO05D006602 1.2e-08 62.8 35 71.4
FAN16G0881 Fragaria x ananassa HOM05D001170 ORTHO05D006602 1.2e-08 62.8 36 72.2
FAN21G0582 Fragaria x ananassa HOM05D001170 ORTHO05D006602 1.2e-08 62.8 36 72.2
COL.COLO4_31488 Corchorus olitorius HOM05D001170 ORTHO05D006602 1.5e-08 62.4 34 70.6
GSVIVG01002064001 Vitis vinifera HOM05D001170 ORTHO05D006602 1.5e-08 62.4 35 68.6
CANSAT80G1846 Cannabis sativa HOM05D001170 ORTHO05D006602 2.0e-08 62.0 35 68.6
Ciclev10015059m.g Citrus clementina HOM05D001170 ORTHO05D006602 2.0e-08 62.0 35 65.7
Gohir.A10G025200 Gossypium hirsutum HOM05D001170 ORTHO05D006602 2.0e-08 62.0 34 73.5
Gohir.D10G025900 Gossypium hirsutum HOM05D001170 ORTHO05D006602 2.0e-08 62.0 34 73.5
Gorai.011G027200 Gossypium raimondii HOM05D001170 ORTHO05D006602 2.0e-08 62.0 34 73.5
Thecc.06G189200 Theobroma cacao HOM05D001170 ORTHO05D006602 2.0e-08 62.0 37 67.6
MD00G1095700 Malus domestica HOM05D001170 ORTHO05D006602 2.6e-08 61.6 35 68.6
Duzib235G1347 Durio zibethinus HOM05D001170 ORTHO05D006602 3.4e-08 61.2 33 72.7
Sabra11G0035400 Salix brachista HOM05D001170 ORTHO05D006602 3.4e-08 61.2 35 65.7
Prupe.4G045800 Prunus persica HOM05D001170 ORTHO05D006602 4.4e-08 60.8 35 68.6
Dinv07552 Davidia involucrata HOM05D001170 ORTHO05D006602 5.8e-08 60.5 35 65.7
SHI01782 Sapria himalayana HOM05D001170 ORTHO05D006602 5.8e-08 60.5 50 58.0
C09p32880 Brassica napus HOM05D001170 ORTHO05D096542 7.5e-08 60.1 30 90.0
CSS0009287 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D006602 9.8e-08 59.7 35 65.7
CSS0049641 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D006602 9.8e-08 59.7 35 65.7
CDE04G1642 Ceratophyllum demersum HOM05D001170 ORTHO05D006602 9.8e-08 59.7 36 63.9
CDE06G2620 Ceratophyllum demersum HOM05D001170 ORTHO05D006602 9.8e-08 59.7 36 63.9
Lalb_Chr05g0218421 Lupinus albus HOM05D001170 ORTHO05D006602 1.3e-07 59.3 35 60.0
Dinv40547 Davidia involucrata HOM05D001170 ORTHO05D006602 1.7e-07 58.9 35 65.7
MD05G1313900 Malus domestica HOM05D001170 ORTHO05D006602 1.7e-07 58.9 35 62.9
SalBow8G0859 Salvia bowleyana HOM05D001170 ORTHO05D006602 1.7e-07 58.9 34 64.7
Eucgr.D00629 Eucalyptus grandis HOM05D001170 ORTHO05D006602 2.2e-07 58.5 35 68.6
Nn1g04056 Nelumbo nucifera HOM05D001170 ORTHO05D006602 2.2e-07 58.5 35 62.9
Migut.M01149 Erythranthe guttata HOM05D001170 ORTHO05D006602 2.9e-07 58.2 34 67.6
Medtr4g088905 Medicago truncatula HOM05D001170 ORTHO05D006602 2.9e-07 58.2 35 62.9
Psat7g114400 Pisum sativum HOM05D001170 ORTHO05D006602 2.9e-07 58.2 35 60.0
Sed0020397 Sechium edule HOM05D001170 ORTHO05D006602 2.9e-07 58.2 35 65.7
Actinidia05624 Actinidia chinensis HOM05D001170 ORTHO05D006602 3.7e-07 57.8 35 62.9
CiPaw.10G047600 Carya illinoinensis HOM05D001170 ORTHO05D006602 3.7e-07 57.8 35 65.7
Lj4g0016173 Lotus japonicus HOM05D001170 ORTHO05D006602 3.7e-07 57.8 35 62.9
Potri.011G051400 Populus trichocarpa HOM05D001170 ORTHO05D006602 3.7e-07 57.8 49 53.1
QL05p040001 Quercus lobata HOM05D001170 ORTHO05D006602 3.7e-07 57.8 35 62.9
QL12p006383 Quercus lobata HOM05D001170 ORTHO05D006602 3.7e-07 57.8 35 62.9
Glyma.13G180400 Glycine max HOM05D001170 ORTHO05D006602 4.9e-07 57.4 35 60.0
TPR.G12036 Trifolium pratense HOM05D001170 ORTHO05D006602 4.9e-07 57.4 35 60.0
Actinidia01886 Actinidia chinensis HOM05D001170 ORTHO05D006602 6.4e-07 57.0 35 57.1
ClCG01G022920 Citrullus lanatus HOM05D001170 ORTHO05D006602 6.4e-07 57.0 35 65.7
Potri.004G042200 Populus trichocarpa HOM05D001170 ORTHO05D006602 6.4e-07 57.0 35 60.0
VMungo0251G3057 Vigna mungo HOM05D001170 ORTHO05D006602 6.4e-07 57.0 35 60.0
arahy.Tifrunner.gnm1.ann1.4SZ21F Arachis hypogaea HOM05D001170 ORTHO05D006602 8.3e-07 56.6 36 61.1
arahy.Tifrunner.gnm1.ann1.NX47XU Arachis hypogaea HOM05D001170 ORTHO05D006602 8.3e-07 56.6 36 61.1
DCAR_004078 Daucus carota HOM05D001170 ORTHO05D006602 1.1e-06 56.2 36 61.1
Phvul.002G228300 Phaseolus vulgaris HOM05D001170 ORTHO05D006602 1.1e-06 56.2 35 60.0
PGR004G2504 Punica granatum HOM05D001170 ORTHO05D006602 1.1e-06 56.2 35 62.9
Lsat_1_v5_gn_7_21060 Lactuca sativa HOM05D001170 ORTHO05D006602 1.4e-06 55.8 32 65.6
PSO675G1931 Papaver somniferum HOM05D001170 ORTHO05D006602 1.4e-06 55.8 35 62.9
CsaV3_6G050090 Cucumis sativus L. HOM05D001170 ORTHO05D006602 1.9e-06 55.5 35 65.7
Hma1.2p1_0126F.1_g059340 Hydrangea macrophylla HOM05D001170 ORTHO05D006602 1.9e-06 55.5 35 60.0
Lj2A397T25 Lonicera japonica HOM05D001170 ORTHO05D021581 1.9e-06 55.5 35 62.9
PSO541G1004 Papaver somniferum HOM05D001170 ORTHO05D006602 2.4e-06 55.1 35 60.0
SGA_v2.0_scaffold100G29673 Striga asiatica HOM05D001170 ORTHO05D006602 2.4e-06 55.1 34 61.8
Solyc02g078360.4 Solanum lycopersicum HOM05D001170 ORTHO05D006602 5.4e-06 53.9 34 58.8
Sopen02g023220 Solanum pennellii HOM05D001170 ORTHO05D006602 5.4e-06 53.9 34 58.8
CSS0013622 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D006602 9.2e-06 53.1 35 51.4
CSS0022827 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D006602 9.2e-06 53.1 35 51.4


User provided reference genes

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