Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p25400 Brassica napus HOM05D000253 ORTHO05D000149 3.1e-40 167.9 79 100.0
C09p47080 Brassica napus HOM05D000253 ORTHO05D013792 1.8e-32 142.1 82 85.4
BolC9t57556H Brassica oleracea HOM05D000253 ORTHO05D013792 1.8e-32 142.1 82 85.4
BolC2t10383H Brassica oleracea HOM05D000253 ORTHO05D000149 4.0e-32 141.0 82 85.4
C06p37680 Brassica napus HOM05D000253 ORTHO05D013792 2.6e-31 138.3 82 84.1
C05p29430 Brassica napus HOM05D000253 ORTHO05D000149 9.9e-31 136.3 82 84.1
BcaC08g45978 Brassica carinata HOM05D000253 ORTHO05D000149 6.0e-28 127.1 76 82.9
BolC6t38871H Brassica oleracea HOM05D000253 ORTHO05D013792 6.0e-28 127.1 76 82.9
BolC3t16716H Brassica oleracea HOM05D000253 ORTHO05D000149 9.6e-26 119.8 76 78.9
BNapus_Darmor_BZH_scaffold_273p00070 Brassica napus HOM05D002794 ORTHO05D013792 2.8e-25 118.2 76 78.9
C03p44500 Brassica napus HOM05D002794 ORTHO05D013792 2.8e-25 118.2 76 78.9
A05p36750 Brassica napus HOM05D000253 ORTHO05D013792 5.4e-13 77.4 35 97.1
Aa31LG5G6220 Aethionema arabicum HOM05D000253 ORTHO05D000149 2.1e-09 65.5 29 100.0
BcaB06g28376 Brassica carinata HOM05D000253 ORTHO05D000149 2.1e-09 65.5 29 100.0
BcaC02g08010 Brassica carinata HOM05D000253 ORTHO05D000149 2.1e-09 65.5 29 100.0
BcaC02g08012 Brassica carinata HOM05D000253 ORTHO05D000149 2.1e-09 65.5 29 100.0
A04p23270 Brassica napus HOM05D000253 ORTHO05D000149 2.1e-09 65.5 29 100.0
C04p59430 Brassica napus HOM05D000253 ORTHO05D000149 2.1e-09 65.5 29 100.0
BolC4t27453H Brassica oleracea HOM05D000253 ORTHO05D000149 2.1e-09 65.5 29 100.0
BraA04t17854Z Brassica rapa HOM05D000253 ORTHO05D000149 2.1e-09 65.5 29 100.0
Thhalv10016488m.g Eutrema salsugineum HOM05D000253 ORTHO05D000149 2.1e-09 65.5 29 100.0
Sp4g13100 Schrenkiella parvula HOM05D000253 ORTHO05D000149 2.1e-09 65.5 29 100.0
Carub.0004s1171 Capsella rubella HOM05D000253 ORTHO05D000149 4.8e-09 64.3 29 96.6
CARHR124020 Cardamine hirsuta HOM05D000253 ORTHO05D000149 4.8e-09 64.3 29 96.6
AL4G25430 Arabidopsis lyrata HOM05D000253 ORTHO05D000149 6.2e-09 63.9 29 93.1
AT2G30550 Arabidopsis thaliana HOM05D000253 ORTHO05D000149 6.2e-09 63.9 29 93.1
AL1G16810 Arabidopsis lyrata HOM05D000253 ORTHO05D000149 1.1e-08 63.2 29 96.6
AT1G06800 Arabidopsis thaliana HOM05D000253 ORTHO05D000149 1.1e-08 63.2 29 96.6
BcaB02g06759 Brassica carinata HOM05D000253 ORTHO05D000149 1.1e-08 63.2 29 96.6
BcaC05g24652 Brassica carinata HOM05D000253 ORTHO05D000149 1.1e-08 63.2 29 96.6
A10p05390 Brassica napus HOM05D000253 ORTHO05D000149 1.1e-08 63.2 29 96.6
C05p04970 Brassica napus HOM05D000253 ORTHO05D000149 1.1e-08 63.2 29 96.6
BolC5t29269H Brassica oleracea HOM05D000253 ORTHO05D000149 1.1e-08 63.2 29 96.6
BraA10t42803Z Brassica rapa HOM05D000253 ORTHO05D000149 1.1e-08 63.2 29 96.6
Carub.0001s0612 Capsella rubella HOM05D000253 ORTHO05D000149 1.1e-08 63.2 29 96.6
Thhalv10007393m.g Eutrema salsugineum HOM05D000253 ORTHO05D000149 1.1e-08 63.2 29 96.6
Sp1g05540 Schrenkiella parvula HOM05D000253 ORTHO05D000149 1.1e-08 63.2 29 96.6
TWI18G1170 Tripterygium wilfordii HOM05D000253 ORTHO05D000149 1.4e-08 62.8 29 93.1
COL.COLO4_05103 Corchorus olitorius HOM05D000253 ORTHO05D000149 2.4e-08 62.0 29 93.1
Duzib138G0339 Durio zibethinus HOM05D000253 ORTHO05D000149 2.4e-08 62.0 29 93.1
FvH4_2g22500 Fragaria vesca HOM05D000253 ORTHO05D000149 2.4e-08 62.0 29 93.1
FAN15G2366 Fragaria x ananassa HOM05D000253 ORTHO05D000149 2.4e-08 62.0 29 93.1
FAN20G1204 Fragaria x ananassa HOM05D000253 ORTHO05D000149 2.4e-08 62.0 29 93.1
FAN24G3021 Fragaria x ananassa HOM05D000253 ORTHO05D000149 2.4e-08 62.0 29 93.1
FAN27G2990 Fragaria x ananassa HOM05D000253 ORTHO05D000149 2.4e-08 62.0 29 93.1
Gohir.A11G127500 Gossypium hirsutum HOM05D000253 ORTHO05D000149 2.4e-08 62.0 29 93.1
Gohir.D11G132900 Gossypium hirsutum HOM05D000253 ORTHO05D000149 2.4e-08 62.0 29 93.1
MD05G1205500 Malus domestica HOM05D000253 ORTHO05D000149 2.4e-08 62.0 29 93.1
MD10G1192500 Malus domestica HOM05D000253 ORTHO05D000149 2.4e-08 62.0 29 93.1
Potri.002G044700 Populus trichocarpa HOM05D000253 ORTHO05D000149 2.4e-08 62.0 29 93.1
Potri.005G218500 Populus trichocarpa HOM05D000253 ORTHO05D000149 2.4e-08 62.0 29 93.1
Prupe.8G231900 Prunus persica HOM05D000253 ORTHO05D000149 2.4e-08 62.0 29 93.1
PGR044G1631 Punica granatum HOM05D000253 ORTHO05D000149 2.4e-08 62.0 29 93.1
RcHm_v2.0_Chr6g0289521 Rosa chinensis HOM05D000253 ORTHO05D000149 2.4e-08 62.0 29 93.1
Sabra05G0167600 Salix brachista HOM05D000253 ORTHO05D000149 2.4e-08 62.0 29 93.1
Solyc09g065890.4 Solanum lycopersicum HOM05D000253 ORTHO05D000149 2.4e-08 62.0 29 93.1
Sopen09g027680 Solanum pennellii HOM05D000253 ORTHO05D000149 2.4e-08 62.0 29 93.1
THA.LOC104800800 Tarenaya hassleriana HOM05D000253 ORTHO05D000149 2.4e-08 62.0 29 93.1
Thecc.01G267100 Theobroma cacao HOM05D000253 ORTHO05D000149 2.4e-08 62.0 29 93.1
GSVIVG01000725001 Vitis vinifera HOM05D000253 ORTHO05D000149 2.4e-08 62.0 29 93.1
Zm00001eb350800 Zea mays HOM05D000253 ORTHO05D000149 2.4e-08 62.0 29 89.7
BcaC01g04155 Brassica carinata HOM05D000253 ORTHO05D013792 3.1e-08 61.6 29 93.1
CARHR006500 Cardamine hirsuta HOM05D000253 ORTHO05D000149 3.1e-08 61.6 29 93.1
Lj2A1158T47 Lonicera japonica HOM05D000253 ORTHO05D000149 3.1e-08 61.6 29 89.7
Nn3g19510 Nelumbo nucifera HOM05D000253 ORTHO05D000149 3.1e-08 61.6 29 89.7
PGSC0003DMG400007545 Solanum tuberosum HOM05D000253 ORTHO05D000149 3.1e-08 61.6 29 89.7
TWI12G0174 Tripterygium wilfordii HOM05D000253 ORTHO05D000149 3.1e-08 61.6 29 93.1
Os05g0390000 Oryza sativa ssp. japonica HOM05D000253 ORTHO05D000149 4.0e-08 61.2 29 89.7
Cfa002329 Carpinus fangiana HOM05D000253 ORTHO05D000149 5.3e-08 60.8 29 89.7
CiPaw.03G257800 Carya illinoinensis HOM05D000253 ORTHO05D000149 5.3e-08 60.8 29 89.7
Cc01_g18830 Coffea canephora HOM05D000253 ORTHO05D000149 5.3e-08 60.8 29 89.7
Haze_24535 Corylus avellana HOM05D000253 ORTHO05D000149 5.3e-08 60.8 29 89.7
Glyma.02G142200 Glycine max HOM05D000253 ORTHO05D000149 5.3e-08 60.8 29 89.7
Medtr7g096140 Medicago truncatula HOM05D000253 ORTHO05D000149 5.3e-08 60.8 29 86.2
Oeu010132.1 Olea europaea HOM05D000253 ORTHO05D000149 5.3e-08 60.8 29 89.7
Peaxi162Scf00049g01720 Petunia axillaris HOM05D000253 ORTHO05D000149 5.3e-08 60.8 29 89.7
TPR.G5740 Trifolium pratense HOM05D000253 ORTHO05D000149 5.3e-08 60.8 29 86.2
DCAR_012518 Daucus carota HOM05D000253 ORTHO05D000149 6.9e-08 60.5 29 89.7
Eucgr.K03311 Eucalyptus grandis HOM05D000253 ORTHO05D000149 6.9e-08 60.5 29 89.7
Hma1.2p1_1029F.1_g249590 Hydrangea macrophylla HOM05D000253 ORTHO05D000149 6.9e-08 60.5 29 89.7
Hma1.2p1_3112F.1_g332770 Hydrangea macrophylla HOM05D000253 ORTHO05D000149 6.9e-08 60.5 29 89.7
QL12p042770 Quercus lobata HOM05D000253 ORTHO05D000149 6.9e-08 60.5 29 89.7
THA.LOC104827395 Tarenaya hassleriana HOM05D000253 ORTHO05D000149 6.9e-08 60.5 29 89.7
Manes.05G084600 Manihot esculenta HOM05D000253 ORTHO05D000149 9.0e-08 60.1 29 89.7
Nn3g19901 Nelumbo nucifera HOM05D000253 ORTHO05D000149 9.0e-08 60.1 29 86.2
Lj1g0024643 Lotus japonicus HOM05D000253 ORTHO05D000149 1.2e-07 59.7 29 86.2
Nitab4.5_0000187g0220 Nicotiana tabacum HOM05D000253 ORTHO05D000149 1.2e-07 59.7 29 86.2
Nitab4.5_0001556g0040 Nicotiana tabacum HOM05D000253 ORTHO05D000149 1.2e-07 59.7 29 86.2
TPR.G5735 Trifolium pratense HOM05D000253 ORTHO05D000149 1.2e-07 59.7 29 86.2
CSS0025350 Camellia sinensis var. sinensis HOM05D000253 ORTHO05D000149 1.5e-07 59.3 29 89.7
CSS0035390 Camellia sinensis var. sinensis HOM05D000253 ORTHO05D000149 1.5e-07 59.3 29 89.7
MBI04_g06855_MAGBIO Magnolia biondii HOM05D000253 ORTHO05D000149 1.5e-07 59.3 29 86.2
Atru.chr5.1575 Acer truncatum HOM05D000253 ORTHO05D000149 2.0e-07 58.9 29 89.7
arahy.Tifrunner.gnm1.ann1.2R73VM Arachis hypogaea HOM05D000253 ORTHO05D000149 2.0e-07 58.9 29 86.2
arahy.Tifrunner.gnm1.ann1.L2FRMW Arachis hypogaea HOM05D000253 ORTHO05D000149 2.0e-07 58.9 29 86.2
Ciclev10019700m.g Citrus clementina HOM05D000253 ORTHO05D000149 2.0e-07 58.9 29 89.7
Glyma.03G159000 Glycine max HOM05D000253 ORTHO05D000149 2.0e-07 58.9 29 86.2
Lalb_Chr21g0306261 Lupinus albus HOM05D000253 ORTHO05D000149 2.0e-07 58.9 29 86.2
Hund02882 Selenicereus undatus HOM05D000253 ORTHO05D000149 2.0e-07 58.9 29 86.2
TAR636G2280 Trochodendron aralioides HOM05D000253 ORTHO05D000149 2.0e-07 58.9 29 86.2
Gorai.004G074700 Gossypium raimondii HOM05D000253 ORTHO05D000149 2.6e-07 58.5 29 89.7
Medtr7g096120 Medicago truncatula HOM05D000253 ORTHO05D000149 2.6e-07 58.5 29 82.8
PSO210G7170 Papaver somniferum HOM05D000253 ORTHO05D000149 2.6e-07 58.5 29 86.2
VMungo0720G0441 Vigna mungo HOM05D000253 ORTHO05D000149 2.6e-07 58.5 29 82.8
Actinidia21157 Actinidia chinensis HOM05D005019 ORTHO05D006625 3.4e-07 58.2 29 86.2
ATR0782G127 Amborella trichopoda HOM05D000253 ORTHO05D000149 3.4e-07 58.2 29 86.2
Dinv22478 Davidia involucrata HOM05D000253 ORTHO05D000149 3.4e-07 58.2 29 89.7
Lj5g0012725 Lotus japonicus HOM05D000253 ORTHO05D000149 3.4e-07 58.2 29 82.8
Phvul.001G156900 Phaseolus vulgaris HOM05D000253 ORTHO05D000149 3.4e-07 58.2 29 82.8
AUR62011938 Chenopodium quinoa HOM05D000253 ORTHO05D000149 4.5e-07 57.8 29 86.2
Ciclev10006964m.g Citrus clementina HOM05D000253 ORTHO05D000149 4.5e-07 57.8 29 82.8
Migut.N02328 Erythranthe guttata HOM05D000253 ORTHO05D000149 4.5e-07 57.8 29 79.3
MBI17_g15408_MAGBIO Magnolia biondii HOM05D000253 ORTHO05D000149 4.5e-07 57.8 29 82.8
MBI17_g43992_MAGBIO Magnolia biondii HOM05D000253 ORTHO05D000149 4.5e-07 57.8 29 82.8
Nn1g02573 Nelumbo nucifera HOM05D000253 ORTHO05D000149 4.5e-07 57.8 29 86.2
VMungo1383G0573 Vigna mungo HOM05D000253 ORTHO05D000149 4.5e-07 57.8 29 79.3
CSS0005370 Camellia sinensis var. sinensis HOM05D000253 ORTHO05D000149 5.8e-07 57.4 29 86.2
CSS0041595 Camellia sinensis var. sinensis HOM05D000253 ORTHO05D000149 5.8e-07 57.4 29 86.2
Gorai.007G142100 Gossypium raimondii HOM05D000253 ORTHO05D000149 5.8e-07 57.4 29 86.2
Lalb_Chr25g0290101 Lupinus albus HOM05D000253 ORTHO05D000149 5.8e-07 57.4 29 82.8
arahy.Tifrunner.gnm1.ann1.0AAB2E Arachis hypogaea HOM05D000253 ORTHO05D000149 7.6e-07 57.0 29 82.8
arahy.Tifrunner.gnm1.ann1.S9JULG Arachis hypogaea HOM05D000253 ORTHO05D000149 7.6e-07 57.0 29 82.8
Glyma.02G141900 Glycine max HOM05D000253 ORTHO05D000149 7.6e-07 57.0 29 79.3
Lj5g0002403 Lotus japonicus HOM05D000253 ORTHO05D000149 7.6e-07 57.0 29 86.2
Phvul.007G177100 Phaseolus vulgaris HOM05D000253 ORTHO05D000149 7.6e-07 57.0 29 82.8
vmacro15404 Vaccinium macrocarpon HOM05D000253 ORTHO05D000149 7.6e-07 57.0 29 86.2
TPR.G5754 Trifolium pratense HOM05D000253 ORTHO05D000149 9.9e-07 56.6 29 82.8
Ah.02g111460 Amaranthus hybridus HOM05D000253 ORTHO05D000149 1.3e-06 56.2 29 82.8
EL10Ac5g10462 Beta vulgaris HOM05D000253 ORTHO05D000149 1.3e-06 56.2 29 82.8
CAN.G1403.2 Capsicum annuum HOM05D000253 ORTHO05D000149 1.3e-06 56.2 29 82.8
CDE07G1061 Ceratophyllum demersum HOM05D000253 ORTHO05D000149 1.3e-06 56.2 29 82.8
AUR62032254 Chenopodium quinoa HOM05D000253 ORTHO05D000149 1.3e-06 56.2 29 82.8
HanXRQChr12g0382141 Helianthus annuus HOM05D000253 ORTHO05D000149 1.3e-06 56.2 29 86.2
Lj3A719T116 Lonicera japonica HOM05D000253 ORTHO05D000149 1.3e-06 56.2 28 82.1
Lj3A786T52 Lonicera japonica HOM05D000253 ORTHO05D000149 1.3e-06 56.2 28 82.1
Medtr4g077070 Medicago truncatula HOM05D000253 ORTHO05D000149 1.3e-06 56.2 29 75.9
TAR636G1419 Trochodendron aralioides HOM05D000253 ORTHO05D000149 1.3e-06 56.2 29 82.8
Cc03_g04690 Coffea canephora HOM05D000253 ORTHO05D000149 1.7e-06 55.8 29 75.9
Psat7g172080 Pisum sativum HOM05D000253 ORTHO05D000149 1.7e-06 55.8 29 75.9
Sc24g0004310 Simmondsia chinensis HOM05D000253 ORTHO05D000149 1.7e-06 55.8 28 82.1
TAR623G1154 Trochodendron aralioides HOM05D000253 ORTHO05D000149 1.7e-06 55.8 29 75.9
Actinidia24937 Actinidia chinensis HOM05D000253 ORTHO05D000149 2.2e-06 55.5 29 82.8
Thecc.04G244900 Theobroma cacao HOM05D000253 ORTHO05D000149 2.2e-06 55.5 27 88.9
VMungo1127G1761 Vigna mungo HOM05D000253 ORTHO05D000149 2.2e-06 55.5 29 75.9
CsaV3_7G027580 Cucumis sativus L. HOM05D000253 ORTHO05D000149 2.9e-06 55.1 29 79.3
Glyma.02G142100 Glycine max HOM05D000253 ORTHO05D000149 2.9e-06 55.1 29 75.9
Lj1P322T13 Lonicera japonica HOM05D000253 ORTHO05D000149 2.9e-06 55.1 29 79.3
CDE06G1746 Ceratophyllum demersum HOM05D000253 ORTHO05D000149 3.8e-06 54.7 29 79.3
ClCG09G007570 Citrullus lanatus HOM05D000253 ORTHO05D000149 3.8e-06 54.7 29 79.3
ECA233G1130 Erigeron canadensis HOM05D000253 ORTHO05D000149 3.8e-06 54.7 29 82.8
PSO832G2267 Papaver somniferum HOM05D000253 ORTHO05D000149 3.8e-06 54.7 29 82.8
Sed0022108 Sechium edule HOM05D000253 ORTHO05D000149 3.8e-06 54.7 29 79.3
MELO3C015765.2 Cucumis melo HOM05D000253 ORTHO05D000149 4.9e-06 54.3 29 79.3
Nn7g36291 Nelumbo nucifera HOM05D000253 ORTHO05D000149 4.9e-06 54.3 28 78.6
ATR0782G143 Amborella trichopoda HOM05D000253 ORTHO05D000149 6.4e-06 53.9 29 79.3
Aqoxy2G03544 Aquilegia oxysepala HOM05D000253 ORTHO05D000149 6.4e-06 53.9 29 75.9
Ca_18970_v3 Cicer arietinum L. HOM05D000253 ORTHO05D000149 6.4e-06 53.9 29 75.9
Glyma.11G093400 Glycine max HOM05D000253 ORTHO05D000149 6.4e-06 53.9 29 75.9
Phvul.011G022500 Phaseolus vulgaris HOM05D000253 ORTHO05D000149 6.4e-06 53.9 29 75.9
MELO3C015770.2 Cucumis melo HOM05D000253 ORTHO05D000149 8.4e-06 53.5 29 75.9
CsaV3_7G027550 Cucumis sativus L. HOM05D000253 ORTHO05D000149 8.4e-06 53.5 29 75.9
CsaV3_7G027570 Cucumis sativus L. HOM05D000253 ORTHO05D000149 8.4e-06 53.5 29 75.9
Lsat_1_v5_gn_5_66800 Lactuca sativa HOM05D000253 ORTHO05D000149 8.4e-06 53.5 29 75.9
Lj2g0025776 Lotus japonicus HOM05D000253 ORTHO05D000149 8.4e-06 53.5 25 92.0
GSVIVG01025238001 Vitis vinifera HOM05D000253 ORTHO05D000149 8.4e-06 53.5 29 75.9


User provided reference genes

Program Settings