Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 3.6e-112 408.3 210 100.0
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 3.6e-112 408.3 210 100.0
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 3.0e-111 405.2 210 99.0
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 3.0e-111 405.2 210 99.0
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 1.2e-110 403.3 210 98.6
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 1.2e-110 403.3 210 98.6
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 2.8e-109 398.7 210 97.1
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 3.1e-108 395.2 210 96.2
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 7.0e-108 394.0 210 95.7
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 1.2e-107 393.3 210 94.8
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 3.6e-104 381.7 208 93.3
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 1.0e-103 380.2 210 92.9
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 5.7e-102 374.4 207 92.3
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 9.8e-102 373.6 207 92.3
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 1.3e-101 373.2 208 90.9
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 1.3e-101 373.2 208 91.3
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 1.3e-101 373.2 208 91.3
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 1.7e-101 372.9 208 91.8
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.7e-101 372.9 208 91.3
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 6.3e-101 370.9 208 90.9
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 6.3e-101 370.9 208 90.9
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 6.3e-101 370.9 208 89.9
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 6.3e-101 370.9 208 90.4
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 8.3e-101 370.5 208 90.9
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 1.1e-100 370.2 207 90.8
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 1.1e-100 370.2 208 89.9
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.4e-100 369.8 208 89.9
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.4e-100 369.8 208 89.9
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 1.4e-100 369.8 208 89.9
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 2.4e-100 369.0 208 88.9
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 3.1e-100 368.6 208 89.4
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 3.1e-100 368.6 208 90.4
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 3.1e-100 368.6 211 89.6
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 4.1e-100 368.2 207 89.4
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 4.1e-100 368.2 207 89.4
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 4.1e-100 368.2 208 90.4
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 4.1e-100 368.2 208 89.4
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 5.4e-100 367.9 210 88.6
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 5.4e-100 367.9 208 89.9
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 5.4e-100 367.9 208 88.9
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 5.4e-100 367.9 208 88.5
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 7.0e-100 367.5 208 89.4
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 1.6e-99 366.3 201 91.5
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 1.6e-99 366.3 208 89.4
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 1.6e-99 366.3 208 89.4
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 2.0e-99 365.9 208 88.9
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 2.0e-99 365.9 207 90.3
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 2.7e-99 365.5 208 89.4
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 2.7e-99 365.5 208 88.5
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 3.5e-99 365.2 207 89.4
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 3.5e-99 365.2 208 88.5
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 3.5e-99 365.2 208 89.4
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 4.5e-99 364.8 208 88.5
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 7.7e-99 364.0 208 88.0
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 7.7e-99 364.0 208 88.5
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 7.7e-99 364.0 208 88.9
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 7.7e-99 364.0 208 88.0
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 1.0e-98 363.6 208 88.5
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 1.0e-98 363.6 208 88.5
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 1.0e-98 363.6 208 88.0
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 1.3e-98 363.2 208 87.5
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 1.7e-98 362.8 208 87.5
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 2.3e-98 362.5 208 89.4
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 2.9e-98 362.1 208 88.0
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 6.6e-98 360.9 208 88.0
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 6.6e-98 360.9 208 88.5
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 1.1e-97 360.1 207 87.9
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.5e-97 359.8 208 86.5
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 1.5e-97 359.8 207 87.9
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 1.5e-97 359.8 207 86.5
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 1.5e-97 359.8 213 86.9
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 2.5e-97 359.0 208 88.0
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 3.3e-97 358.6 208 87.5
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 3.3e-97 358.6 208 87.0
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 4.2e-97 358.2 208 88.0
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 5.5e-97 357.8 208 87.5
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 7.2e-97 357.5 208 87.0
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 9.5e-97 357.1 210 87.1
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 9.5e-97 357.1 208 86.1
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 1.2e-96 356.7 208 86.5
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 1.6e-96 356.3 208 87.5
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 1.6e-96 356.3 208 87.5
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 2.1e-96 355.9 208 87.0
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 8.0e-96 354.0 208 87.0
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 8.0e-96 354.0 218 83.0
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 1.4e-95 353.2 208 86.5
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 2.3e-95 352.4 210 85.7
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 3.0e-95 352.1 206 86.9
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 5.2e-95 351.3 208 88.0
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 6.8e-95 350.9 208 87.0
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 1.5e-94 349.7 206 86.4
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 2.6e-94 349.0 208 85.6
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 3.4e-94 348.6 208 85.1
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.8e-93 345.5 208 86.1
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.8e-93 345.5 208 86.1
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 4.9e-93 344.7 208 83.2
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 6.3e-93 344.4 208 82.7
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.1e-92 343.6 208 85.6
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 3.2e-92 342.0 208 85.6
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 9.2e-92 340.5 197 88.3
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 1.2e-91 340.1 178 95.5
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.0e-90 337.0 208 83.7
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 1.0e-90 337.0 208 83.7
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 1.5e-89 333.2 178 91.6
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 3.3e-89 332.0 177 92.1
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 2.8e-88 328.9 178 90.4
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 4.0e-87 325.1 208 81.7
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 2.0e-86 322.8 178 89.3
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 8.3e-85 317.4 207 80.2
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 1.9e-84 316.2 178 84.8
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 2.4e-84 315.8 201 75.1
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 7.8e-83 310.8 191 83.8
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 5.6e-81 304.7 209 77.5
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 5.2e-79 298.1 208 77.9
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 6.4e-77 291.2 167 84.4
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 3.2e-76 288.9 206 74.8
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 9.2e-76 287.3 155 91.0
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 2.3e-74 282.7 154 90.3
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 2.3e-71 272.7 208 71.2
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 4.1e-68 261.9 233 63.5
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 1.2e-67 260.4 195 64.1
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 2.5e-65 252.7 207 66.7
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 3.3e-65 252.3 204 60.8
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 1.2e-64 250.4 199 60.8
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 8.1e-64 247.7 198 60.6
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 4.0e-63 245.4 161 78.9
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 2.5e-57 226.1 208 52.9
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 4.3e-57 225.3 119 90.8
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 8.1e-56 221.1 167 71.9
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 4.9e-53 211.8 134 85.1
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 3.0e-50 202.6 150 70.0
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 4.3e-49 198.7 208 51.4
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 2.8e-48 196.1 202 53.0
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 7.6e-46 188.0 204 46.1
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 9.9e-46 187.6 204 46.1
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 9.3e-44 181.0 209 53.1
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 2.5e-41 172.9 160 62.5
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 6.2e-40 168.3 98 82.7
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 3.1e-39 166.0 232 42.7
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 1.9e-36 156.8 208 48.1
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 1.4e-31 140.6 95 76.8
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 4.1e-31 139.0 99 72.7
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 6.9e-31 138.3 207 45.9
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 2.9e-29 132.9 92 77.2
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 5.5e-28 128.6 187 38.0
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 3.5e-27 125.9 135 54.8
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 9.7e-25 117.9 59 88.1
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.6e-24 117.1 75 81.3
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 3.7e-24 115.9 82 74.4
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 1.4e-23 114.0 60 93.3
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 2.4e-23 113.2 84 71.4
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 6.9e-23 111.7 73 78.1
Cc11_g17360 Coffea canephora HOM05D004675 ORTHO05D005631 8.5e-13 78.2 61 60.7
BcaB01g02675 Brassica carinata HOM05D004675 ORTHO05D000065 1.6e-11 73.9 62 69.4
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 2.2e-08 63.5 39 71.8
BcaB04g19721 Brassica carinata HOM05D004675 ORTHO05D092614 3.7e-08 62.8 69 58.0
Hma1.2p1_3454F.1_g336085 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 6.3e-08 62.0 38 73.7
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 5.9e-06 55.5 137 24.1


User provided reference genes

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