Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p24740 Brassica napus HOM05D003025 ORTHO05D003305 1.2e-198 696.4 368 100.0
BcaC04g21446 Brassica carinata HOM05D003025 ORTHO05D003305 1.7e-157 559.7 343 88.6
BolC9t56021H Brassica oleracea HOM05D003025 ORTHO05D003305 2.9e-149 532.3 359 83.0
BraA09t38060Z Brassica rapa HOM05D003025 ORTHO05D003305 2.1e-136 489.6 297 86.2
C09p31660 Brassica napus HOM05D003025 ORTHO05D003305 1.1e-113 414.1 279 84.2
BcaB07g30644 Brassica carinata HOM05D003025 ORTHO05D003305 8.0e-99 364.8 357 66.9
Thhalv10004181m.g Eutrema salsugineum HOM05D003025 ORTHO05D003305 4.8e-96 355.5 426 58.7
Sp2g14630 Schrenkiella parvula HOM05D003025 ORTHO05D003305 2.3e-90 336.7 422 57.8
AL5G13600 Arabidopsis lyrata HOM05D003025 ORTHO05D003305 2.2e-88 330.1 426 55.6
BcaC06g31142 Brassica carinata HOM05D003025 ORTHO05D003305 1.2e-86 324.3 374 59.4
BolC7t43953H Brassica oleracea HOM05D003025 ORTHO05D003305 2.2e-85 320.1 373 58.7
BraA06t27196Z Brassica rapa HOM05D003025 ORTHO05D003305 2.1e-83 313.5 378 57.7
Carub.0005s0297 Capsella rubella HOM05D003025 ORTHO05D003305 8.8e-82 308.1 422 54.5
AT2G03810 Arabidopsis thaliana HOM05D003025 ORTHO05D003305 1.5e-81 307.4 412 53.6
CARHR146220 Cardamine hirsuta HOM05D003025 ORTHO05D003305 1.9e-76 290.4 388 55.2
Aa31LG2G6910 Aethionema arabicum HOM05D003025 ORTHO05D003305 1.4e-66 257.7 396 48.5
A06p42840 Brassica napus HOM05D003025 ORTHO05D003305 7.0e-63 245.4 283 60.1
THA.LOC104805213 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 7.8e-38 162.2 471 35.0
C02p51790 Brassica napus HOM05D003025 ORTHO05D003305 6.6e-37 159.1 251 48.6
C07p34250 Brassica napus HOM05D005208 ORTHO05D006415 3.2e-31 140.2 236 51.3
THA.LOC104824052 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 5.6e-28 129.4 456 32.7
BcaC03g17244 Brassica carinata HOM05D003025 ORTHO05D003305 1.0e-21 108.6 167 45.5
THA.LOC104801838 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 1.3e-21 108.2 344 33.7
BolC2t11264H Brassica oleracea HOM05D003025 ORTHO05D003305 1.9e-20 104.4 204 44.1
Carub.0001s1338 Capsella rubella HOM05D003025 ORTHO05D003305 3.7e-19 100.1 289 36.3
BcaC05g25272 Brassica carinata HOM05D003025 ORTHO05D003305 1.1e-18 98.6 249 37.3
C05p11460 Brassica napus HOM05D003025 ORTHO05D003305 1.1e-18 98.6 249 38.6
BcaB02g06463 Brassica carinata HOM05D003025 ORTHO05D003305 4.0e-18 96.7 260 35.8
COL.COLO4_27800 Corchorus olitorius HOM05D003025 ORTHO05D003305 1.5e-17 94.7 355 29.0
A06p09750 Brassica napus HOM05D003025 ORTHO05D003305 4.9e-16 89.7 258 36.4
BraA06t24164Z Brassica rapa HOM05D003025 ORTHO05D003305 1.1e-15 88.6 261 35.2
Nn4g23540 Nelumbo nucifera HOM05D003025 ORTHO05D003305 1.1e-15 88.6 308 32.8
BcaB03g16265 Brassica carinata HOM05D003025 ORTHO05D003305 2.1e-14 84.3 56 69.6
Duzib248G1661 Durio zibethinus HOM05D003025 ORTHO05D003305 4.6e-14 83.2 377 27.9
Thecc.02G322700 Theobroma cacao HOM05D003025 ORTHO05D003305 4.6e-14 83.2 59 59.3
TAR374G0527 Trochodendron aralioides HOM05D003025 ORTHO05D003305 3.9e-13 80.1 295 33.2
Gohir.A13G088100 Gossypium hirsutum HOM05D003025 ORTHO05D003305 5.1e-13 79.7 375 27.2
Gohir.D02G131800 Gossypium hirsutum HOM05D003025 ORTHO05D003305 5.1e-13 79.7 384 28.6
Gohir.D13G085500 Gossypium hirsutum HOM05D003025 ORTHO05D003305 1.1e-12 78.6 349 27.5
Actinidia19904 Actinidia chinensis HOM05D003025 ORTHO05D003305 1.9e-12 77.8 291 29.9
arahy.Tifrunner.gnm1.ann1.8UFH9N Arachis hypogaea HOM05D003025 ORTHO05D003305 2.5e-12 77.4 303 33.0
Gohir.A03G106600 Gossypium hirsutum HOM05D003025 ORTHO05D003305 3.3e-12 77.0 361 27.4
Gorai.013G097400 Gossypium raimondii HOM05D003025 ORTHO05D003305 3.3e-12 77.0 349 28.1
A02p33640 Brassica napus HOM05D003025 ORTHO05D003305 5.6e-12 76.3 306 31.0
Haze_11858 Corylus avellana HOM05D003025 ORTHO05D003305 7.4e-12 75.9 196 29.6
arahy.Tifrunner.gnm1.ann1.161SS5 Arachis hypogaea HOM05D003025 ORTHO05D003305 1.3e-11 75.1 301 29.6
Duzib251G0179 Durio zibethinus HOM05D003025 ORTHO05D003305 1.6e-11 74.7 376 27.9
Gohir.D12G162800 Gossypium hirsutum HOM05D003025 ORTHO05D003305 2.1e-11 74.3 371 27.0
Psat2g085960 Pisum sativum HOM05D003025 ORTHO05D003305 2.1e-11 74.3 288 33.3
Potri.008G111800 Populus trichocarpa HOM05D003025 ORTHO05D003305 2.1e-11 74.3 73 50.7
TWI31G1177 Tripterygium wilfordii HOM05D003025 ORTHO05D003305 2.1e-11 74.3 409 27.1
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 2.8e-11 73.9 306 30.7
CSS0010260 Camellia sinensis var. sinensis HOM05D003025 ORTHO05D003305 3.7e-11 73.6 335 28.4
Gorai.005G147700 Gossypium raimondii HOM05D003025 ORTHO05D003305 6.2e-11 72.8 467 25.5
Sabra08G0084400 Salix brachista HOM05D003025 ORTHO05D003305 6.2e-11 72.8 49 65.3
Gorai.008G175400 Gossypium raimondii HOM05D003025 ORTHO05D003305 8.2e-11 72.4 213 31.0
Medtr5g047930 Medicago truncatula HOM05D003025 ORTHO05D003305 8.2e-11 72.4 287 32.8
Actinidia31928 Actinidia chinensis HOM05D003025 ORTHO05D003305 1.1e-10 72.0 280 28.6
HanXRQChr12g0365071 Helianthus annuus HOM05D003025 ORTHO05D003305 1.1e-10 72.0 267 29.6
HanXRQChr08g0215591 Helianthus annuus HOM05D003025 ORTHO05D003305 1.4e-10 71.6 65 50.8
Dinv34020 Davidia involucrata HOM05D003025 ORTHO05D003305 1.8e-10 71.2 333 30.9
Gohir.A12G159500 Gossypium hirsutum HOM05D003025 ORTHO05D003305 3.1e-10 70.5 348 27.0
Manes.14G090300 Manihot esculenta HOM05D003025 ORTHO05D003305 3.1e-10 70.5 241 27.4
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 5.3e-10 69.7 195 30.8
Sabra10G0106400 Salix brachista HOM05D003025 ORTHO05D003305 5.3e-10 69.7 121 37.2
CiPaw.05G121600 Carya illinoinensis HOM05D003025 ORTHO05D003305 6.9e-10 69.3 315 29.5
Ca_05068_v3 Cicer arietinum L. HOM05D003025 ORTHO05D003305 6.9e-10 69.3 393 31.0
Lj3A1027T87 Lonicera japonica HOM05D003025 ORTHO05D003305 6.9e-10 69.3 321 29.0
TPR.G38556 Trifolium pratense HOM05D003025 ORTHO05D003305 9.0e-10 68.9 287 31.7
C04p63350 Brassica napus HOM05D016957 ORTHO05D024051 1.5e-09 68.2 70 50.0
BolC4t27809H Brassica oleracea HOM05D016957 ORTHO05D024051 1.5e-09 68.2 70 50.0
BraA02t07444Z Brassica rapa HOM05D016957 ORTHO05D024051 1.5e-09 68.2 70 50.0
Potri.010G138100 Populus trichocarpa HOM05D003025 ORTHO05D003305 2.6e-09 67.4 73 46.6
TAR622G0187 Trochodendron aralioides HOM05D003025 ORTHO05D003305 3.4e-09 67.0 304 32.6
Cpa.g.sc1.169 Carica papaya HOM05D003025 ORTHO05D003305 4.5e-09 66.6 209 28.2
Glyma.02G122700 Glycine max HOM05D003025 ORTHO05D003305 4.5e-09 66.6 113 32.7
ECA234G4845 Erigeron canadensis HOM05D003025 ORTHO05D003305 5.8e-09 66.2 299 28.1
Lj6A773T133 Lonicera japonica HOM05D003025 ORTHO05D003305 5.8e-09 66.2 321 26.2
Atru.chr11.1558 Acer truncatum HOM05D003025 ORTHO05D003305 1.3e-08 65.1 105 42.9
Actinidia13406 Actinidia chinensis HOM05D003025 ORTHO05D003305 1.7e-08 64.7 44 61.4
CANSAT64G2528 Cannabis sativa HOM05D003025 ORTHO05D003305 1.7e-08 64.7 124 34.7
vmacro10474 Vaccinium macrocarpon HOM05D003025 ORTHO05D003305 1.7e-08 64.7 75 45.3
CiPaw.06G095000 Carya illinoinensis HOM05D003025 ORTHO05D003305 2.2e-08 64.3 202 32.2
Rhsim12G0071300 Rhododendron simsii HOM05D003025 ORTHO05D003305 2.2e-08 64.3 299 29.4
CsaV3_5G033470 Cucumis sativus L. HOM05D003025 ORTHO05D003305 4.9e-08 63.2 328 27.7
ECA233G1104 Erigeron canadensis HOM05D003025 ORTHO05D003305 4.9e-08 63.2 79 41.8
Oeu003749.3 Olea europaea HOM05D003025 ORTHO05D003305 8.4e-08 62.4 53 47.2
Glyma.01G064900 Glycine max HOM05D003025 ORTHO05D003305 1.1e-07 62.0 68 50.0
MBI15_g31908_MAGBIO Magnolia biondii HOM05D003025 ORTHO05D003305 1.4e-07 61.6 307 28.7
VMungo1215G0401 Vigna mungo HOM05D003025 ORTHO05D003305 1.4e-07 61.6 288 30.2
VMungo0251G3127 Vigna mungo HOM05D003025 ORTHO05D003305 1.9e-07 61.2 304 27.3
BcaB02g06488 Brassica carinata HOM05D003025 ORTHO05D039894 2.5e-07 60.8 55 61.8
Nitab4.5_0009153g0010 Nicotiana tabacum HOM05D003025 ORTHO05D003305 4.2e-07 60.1 103 34.0
PSO782G5508 Papaver somniferum HOM05D003025 ORTHO05D003305 4.2e-07 60.1 317 25.9
Peaxi162Scf00188g01025 Petunia axillaris HOM05D003025 ORTHO05D003305 7.1e-07 59.3 357 27.5
Phvul.003G038300 Phaseolus vulgaris HOM05D003025 ORTHO05D003305 7.1e-07 59.3 276 27.5
Ciclev10031644m.g Citrus clementina HOM05D003025 ORTHO05D003305 1.2e-06 58.5 221 28.1
Dinv15582 Davidia involucrata HOM05D003025 ORTHO05D003305 1.2e-06 58.5 349 26.1
Migut.L01161 Erythranthe guttata HOM05D003025 ORTHO05D003305 1.2e-06 58.5 332 25.6
PSO063G1603 Papaver somniferum HOM05D003025 ORTHO05D003305 1.2e-06 58.5 360 24.4
MELO3C012167.2 Cucumis melo HOM05D003025 ORTHO05D003305 2.1e-06 57.8 233 25.3
MBI14_g31150_MAGBIO Magnolia biondii HOM05D003025 ORTHO05D003305 2.1e-06 57.8 43 58.1
C06p04330 Brassica napus HOM05D016957 ORTHO05D024051 2.7e-06 57.4 70 47.1
DCAR_030058 Daucus carota HOM05D003025 ORTHO05D003305 2.7e-06 57.4 383 25.3
PGSC0003DMG400025716 Solanum tuberosum HOM05D003025 ORTHO05D003305 2.7e-06 57.4 45 51.1
ECA246G4035 Erigeron canadensis HOM05D003025 ORTHO05D003305 3.5e-06 57.0 194 31.4
FAN22G0063 Fragaria x ananassa HOM05D003025 ORTHO05D003305 3.5e-06 57.0 234 25.6
PGR102G2660 Punica granatum HOM05D003025 ORTHO05D003305 3.5e-06 57.0 292 26.7
FvH4_4g29290 Fragaria vesca HOM05D003025 ORTHO05D003305 4.6e-06 56.6 175 27.4
Prupe.1G293500 Prunus persica HOM05D003025 ORTHO05D003305 4.6e-06 56.6 298 24.2
RcHm_v2.0_Chr4g0437341 Rosa chinensis HOM05D003025 ORTHO05D003305 6.1e-06 56.2 197 29.4
CSS0010060 Camellia sinensis var. sinensis HOM05D003025 ORTHO05D003305 7.9e-06 55.8 329 27.7
Rhsim09G0122100 Rhododendron simsii HOM05D003025 ORTHO05D003305 7.9e-06 55.8 344 27.0
Sed0016639 Sechium edule HOM05D003025 ORTHO05D003305 7.9e-06 55.8 300 25.3


User provided reference genes

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