Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p23920 Brassica napus HOM05D006025 ORTHO05D008547 2.0e-175 619.0 322 100.0
BraA09t37996Z Brassica rapa HOM05D006025 ORTHO05D008547 3.1e-171 605.1 322 96.9
Thhalv10004613m.g Eutrema salsugineum HOM05D006025 ORTHO05D008547 4.4e-146 521.5 322 86.6
BcaC04g21520 Brassica carinata HOM05D006025 ORTHO05D008547 2.2e-145 519.2 322 87.9
Sp2g13810 Schrenkiella parvula HOM05D006025 ORTHO05D008547 6.0e-143 511.1 326 83.4
AL5G11850 Arabidopsis lyrata HOM05D006025 ORTHO05D008547 3.9e-142 508.4 327 83.2
Carub.0005s0158 Capsella rubella HOM05D006025 ORTHO05D008547 1.1e-139 500.4 327 82.9
AT2G02590 Arabidopsis thaliana HOM05D006025 ORTHO05D008547 4.0e-139 498.4 327 82.3
BolC7t43841H Brassica oleracea HOM05D006025 ORTHO05D008547 4.6e-135 485.0 326 79.1
BcaC06g31223 Brassica carinata HOM05D006025 ORTHO05D008547 1.0e-134 483.8 326 80.7
CARHR145110 Cardamine hirsuta HOM05D006025 ORTHO05D008547 2.3e-134 482.6 322 79.8
C07p33300 Brassica napus HOM05D006025 ORTHO05D008547 1.9e-133 479.6 322 79.2
BcaC06g34048 Brassica carinata HOM05D006025 ORTHO05D008547 2.1e-132 476.1 322 78.9
C09p30780 Brassica napus HOM05D006025 ORTHO05D008547 2.8e-132 475.7 327 79.5
BraA06t27240Z Brassica rapa HOM05D006025 ORTHO05D008547 2.9e-129 465.7 329 78.4
A06p43550 Brassica napus HOM05D006025 ORTHO05D008547 4.9e-129 464.9 328 77.7
Aa31LG2G7560 Aethionema arabicum HOM05D006025 ORTHO05D008547 2.5e-128 462.6 324 75.9
BolC9t55941H Brassica oleracea HOM05D006025 ORTHO05D008547 2.3e-126 456.1 315 79.0
BcaB07g30697 Brassica carinata HOM05D006025 ORTHO05D008547 4.5e-122 441.8 297 82.8
THA.LOC104805137 Tarenaya hassleriana HOM05D000131 ORTHO05D000086 6.9e-115 417.9 322 68.6
Sed0022227 Sechium edule HOM05D006025 ORTHO05D008547 9.1e-99 364.4 316 62.7
Sabra10G0030400 Salix brachista HOM05D006025 ORTHO05D008547 1.7e-97 360.1 252 72.2
CsaV3_5G032300 Cucumis sativus L. HOM05D006025 ORTHO05D008547 6.5e-97 358.2 249 73.9
Actinidia31175 Actinidia chinensis HOM05D006025 ORTHO05D008547 1.1e-96 357.5 252 71.8
MELO3C012062.2 Cucumis melo HOM05D006025 ORTHO05D008547 1.1e-96 357.5 249 73.9
Ciclev10032129m.g Citrus clementina HOM05D006025 ORTHO05D008547 5.5e-96 355.1 256 71.9
ClCG05G024630 Citrullus lanatus HOM05D006025 ORTHO05D008547 7.2e-96 354.8 320 62.2
Cfa009042 Carpinus fangiana HOM05D006025 ORTHO05D008547 9.4e-96 354.4 312 62.5
PGR119G0173 Punica granatum HOM05D006025 ORTHO05D008547 1.6e-95 353.6 322 61.8
TWI18G0579 Tripterygium wilfordii HOM05D006025 ORTHO05D008547 3.6e-95 352.4 271 66.8
Potri.010G034400 Populus trichocarpa HOM05D006025 ORTHO05D008547 8.0e-95 351.3 250 71.6
Dinv34195 Davidia involucrata HOM05D006025 ORTHO05D008547 1.0e-94 350.9 314 61.8
CANSAT78G1034 Cannabis sativa HOM05D006025 ORTHO05D008547 3.0e-94 349.4 275 65.1
Manes.05G096000 Manihot esculenta HOM05D006025 ORTHO05D008547 3.0e-94 349.4 318 61.3
QL03p065944 Quercus lobata HOM05D006025 ORTHO05D008547 3.0e-94 349.4 316 63.3
CiPaw.05G140400 Carya illinoinensis HOM05D006025 ORTHO05D008547 5.2e-94 348.6 316 61.7
Gohir.D05G323300 Gossypium hirsutum HOM05D006025 ORTHO05D008547 6.7e-94 348.2 319 60.8
FAN22G0508 Fragaria x ananassa HOM05D006025 ORTHO05D008547 1.5e-93 347.1 319 59.6
FAN12G1990 Fragaria x ananassa HOM05D006025 ORTHO05D008547 7.5e-93 344.7 315 59.4
FvH4_4g32070 Fragaria vesca HOM05D006025 ORTHO05D008547 9.7e-93 344.4 319 58.9
Prupe.1G267200 Prunus persica HOM05D006025 ORTHO05D008547 1.3e-92 344.0 284 65.5
COL.COLO4_36182 Corchorus olitorius HOM05D006025 ORTHO05D008547 1.7e-92 343.6 320 61.2
Gorai.009G347000 Gossypium raimondii HOM05D006025 ORTHO05D008547 1.7e-92 343.6 319 60.8
MD16G1079500 Malus domestica HOM05D006025 ORTHO05D008547 2.2e-92 343.2 328 60.1
RcHm_v2.0_Chr4g0440761 Rosa chinensis HOM05D006025 ORTHO05D008547 3.7e-92 342.4 295 61.4
Atru.chr11.1861 Acer truncatum HOM05D006025 ORTHO05D008547 6.3e-92 341.7 298 62.4
Cpa.g.sc73.14 Carica papaya HOM05D006025 ORTHO05D008547 8.2e-92 341.3 319 60.2
FAN07G0827 Fragaria x ananassa HOM05D006025 ORTHO05D008547 1.1e-91 340.9 321 57.9
MD13G1079600 Malus domestica HOM05D006025 ORTHO05D008547 1.4e-91 340.5 326 60.1
Phvul.002G080900 Phaseolus vulgaris HOM05D006025 ORTHO05D008547 1.8e-91 340.1 256 66.0
Nitab4.5_0000679g0100 Nicotiana tabacum HOM05D006025 ORTHO05D008547 5.3e-91 338.6 253 69.2
Gohir.A05G321100 Gossypium hirsutum HOM05D006025 ORTHO05D008547 7.0e-91 338.2 319 58.6
Thecc.02G232800 Theobroma cacao HOM05D006025 ORTHO05D008547 1.2e-90 337.4 321 58.3
GSVIVG01020079001 Vitis vinifera HOM05D006025 ORTHO05D008547 2.0e-90 336.7 303 59.1
VMungo1215G1908 Vigna mungo HOM05D006025 ORTHO05D008547 3.5e-90 335.9 253 66.0
CAN.G27.7 Capsicum annuum HOM05D006025 ORTHO05D008547 4.5e-90 335.5 332 58.7
Lj6A795T74 Lonicera japonica HOM05D006025 ORTHO05D008547 4.5e-90 335.5 252 68.7
Migut.E00118 Erythranthe guttata HOM05D006025 ORTHO05D008547 2.2e-89 333.2 315 58.1
TAR481G0011 Trochodendron aralioides HOM05D006025 ORTHO05D008547 6.5e-89 331.6 317 58.4
Rhsim12G0129700 Rhododendron simsii HOM05D006025 ORTHO05D008547 1.1e-88 330.9 240 70.0
EL10Ac6g13142 Beta vulgaris HOM05D006025 ORTHO05D008547 2.5e-88 329.7 248 69.0
Cc11_g13550 Coffea canephora HOM05D006025 ORTHO05D008547 2.5e-88 329.7 314 58.3
Sc11g0001660 Simmondsia chinensis HOM05D006025 ORTHO05D008547 2.5e-88 329.7 323 58.8
DCAR_024490 Daucus carota HOM05D006025 ORTHO05D008547 5.5e-88 328.6 205 77.6
Hund25274 Selenicereus undatus HOM05D006025 ORTHO05D008547 5.5e-88 328.6 232 72.8
SalBow8G3437 Salvia bowleyana HOM05D006025 ORTHO05D008547 1.2e-87 327.4 318 58.8
TPR.G26717 Trifolium pratense HOM05D006025 ORTHO05D008547 4.7e-87 325.5 224 71.0
Nn4g23031 Nelumbo nucifera HOM05D006025 ORTHO05D008547 1.0e-86 324.3 220 72.7
Lalb_Chr05g0217521 Lupinus albus HOM05D006025 ORTHO05D008547 1.4e-86 323.9 251 64.1
Ca_04692_v3 Cicer arietinum L. HOM05D006025 ORTHO05D008547 2.3e-86 323.2 224 71.4
Lj2g0002167 Lotus japonicus HOM05D006025 ORTHO05D008547 2.3e-86 323.2 259 65.3
Glyma.01G040500 Glycine max HOM05D006025 ORTHO05D008547 4.0e-86 322.4 225 71.1
arahy.Tifrunner.gnm1.ann1.1ZL8TB Arachis hypogaea HOM05D006025 ORTHO05D008547 6.8e-86 321.6 256 65.6
arahy.Tifrunner.gnm1.ann1.V5YJYF Arachis hypogaea HOM05D006025 ORTHO05D008547 1.2e-85 320.9 256 65.2
Duzib268G1145 Durio zibethinus HOM05D006025 ORTHO05D008547 2.6e-85 319.7 303 60.1
Medtr5g037600 Medicago truncatula HOM05D006025 ORTHO05D008547 2.6e-85 319.7 321 56.7
Sopen05g002930 Solanum pennellii HOM05D006025 ORTHO05D008547 2.6e-85 319.7 295 60.7
Migut.L01348 Erythranthe guttata HOM05D006025 ORTHO05D008547 5.7e-85 318.5 304 58.2
vmacro16324 Vaccinium macrocarpon HOM05D006025 ORTHO05D008547 7.5e-85 318.2 349 55.0
PGSC0003DMG400017619 Solanum tuberosum HOM05D006025 ORTHO05D008547 1.7e-84 317.0 279 61.3
Psat2g115440 Pisum sativum HOM05D006025 ORTHO05D008547 4.1e-83 312.4 224 69.2
Lsat_1_v5_gn_3_49700 Lactuca sativa HOM05D006025 ORTHO05D008547 1.2e-82 310.8 260 61.5
Ah.03g132040 Amaranthus hybridus HOM05D006025 ORTHO05D008547 1.6e-82 310.5 226 69.9
Eucgr.B02589 Eucalyptus grandis HOM05D006025 ORTHO05D008547 2.7e-82 309.7 212 73.6
ATR0665G167 Amborella trichopoda HOM05D006025 ORTHO05D008547 3.5e-82 309.3 268 61.6
MBI04_g22196_MAGBIO Magnolia biondii HOM05D006025 ORTHO05D008547 4.5e-82 308.9 196 77.0
Peaxi162Scf00209g00517 Petunia axillaris HOM05D006025 ORTHO05D008547 4.5e-82 308.9 279 60.2
CSS0050443 Camellia sinensis var. sinensis HOM05D006025 ORTHO05D008547 1.0e-81 307.8 193 78.2
AUR62026262 Chenopodium quinoa HOM05D006025 ORTHO05D008547 1.7e-81 307.0 199 75.9
Haze_12072 Corylus avellana HOM05D006025 ORTHO05D008547 1.7e-81 307.0 290 60.3
Nitab4.5_0002969g0040 Nicotiana tabacum HOM05D006025 ORTHO05D008547 2.9e-81 306.2 259 62.9
Oeu044566.1 Olea europaea HOM05D006025 ORTHO05D008547 2.9e-81 306.2 209 74.2
ECA246G2177 Erigeron canadensis HOM05D006025 ORTHO05D008547 1.5e-80 303.9 203 75.4
PSO478G1322 Papaver somniferum HOM05D006025 ORTHO05D008547 3.2e-80 302.8 271 61.6
MSTRG.7831 Avicennia marina HOM05D006025 ORTHO05D008547 4.2e-80 302.4 300 57.7
Aqoxy3G00786 Aquilegia oxysepala HOM05D006025 ORTHO05D008547 2.1e-79 300.1 289 57.1
HanXRQChr15g0478181 Helianthus annuus HOM05D006025 ORTHO05D008547 6.1e-79 298.5 326 54.0
Os03g0800500 Oryza sativa ssp. japonica HOM05D006025 ORTHO05D008547 2.3e-78 296.6 242 63.2
unitig_62.g23684 Utricularia gibba HOM05D006025 ORTHO05D008547 9.8e-77 291.2 301 54.2
AUR62026454 Chenopodium quinoa HOM05D006025 ORTHO05D008547 2.8e-76 289.7 199 73.9
HanXRQChr17g0544581 Helianthus annuus HOM05D006025 ORTHO05D008547 1.6e-74 283.9 230 64.8
SGA_v2.0_scaffold87G26972 Striga asiatica HOM05D006025 ORTHO05D008547 3.0e-70 269.6 322 50.3
SEGI_16485 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 2.9e-68 263.1 192 65.6
SalBow2G1916 Salvia bowleyana HOM05D006025 ORTHO05D008547 8.3e-68 261.5 317 50.2
Zm00001eb212770 Zea mays HOM05D006025 ORTHO05D008547 2.7e-66 256.5 198 64.6
AagrBONN_evm.TU.Sc2ySwM_117.678 Anthoceros agrestis HOM05D006025 ORTHO05D008547 6.6e-65 251.9 253 51.8
CBR_g39595 Chara braunii HOM05D006025 ORTHO05D008547 1.0e-62 244.6 200 58.5
Mapoly0001s0092 Marchantia polymorpha HOM05D006025 ORTHO05D008547 7.5e-61 238.4 194 59.3
SMO147G0037 Selaginella moellendorffii HOM05D006025 ORTHO05D008547 1.7e-60 237.3 209 56.0
Pp3c22_2360 Physcomitrium patens HOM05D006025 ORTHO05D008547 7.3e-56 221.9 194 57.2
CDE07G0470 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 2.3e-54 216.9 250 49.6
HPP92_018837 Vanilla planifolia HOM05D006025 ORTHO05D008547 2.9e-52 209.9 148 70.3
CDE06G2488 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 3.0e-33 146.7 192 44.8
SEGI_34054 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 3.3e-32 143.3 116 61.2
Glyma.02G024100 Glycine max HOM05D006025 ORTHO05D008547 4.0e-30 136.3 189 46.0
Solyc05g006965.1 Solanum lycopersicum HOM05D006025 ORTHO05D008547 4.0e-30 136.3 175 46.3
Hma1.2p1_0513F.1_g169540 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 1.2e-21 108.2 74 73.0
Hma1.2p1_0808F.1_g221580 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 7.6e-21 105.5 74 68.9
DCAR_001229 Daucus carota HOM05D006025 ORTHO05D008547 6.0e-10 69.3 50 64.0
Zm00001eb151370 Zea mays HOM05D006025 ORTHO05D443914 6.0e-10 69.3 56 67.9
Dinv16285 Davidia involucrata HOM05D000027 ORTHO05D000500 1.1e-06 58.5 118 39.0


User provided reference genes

Program Settings