Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p22550 Brassica napus HOM05D008115 ORTHO05D010112 3.5e-107 391.7 212 100.0
BcaC04g21681 Brassica carinata HOM05D008115 ORTHO05D010112 7.8e-91 337.4 189 96.8
BcaB07g30820 Brassica carinata HOM05D008115 ORTHO05D010112 4.3e-81 305.1 189 91.5
Thhalv10001038m.g Eutrema salsugineum HOM05D008115 ORTHO05D010112 1.3e-80 303.5 193 84.5
Sp2g11610 Schrenkiella parvula HOM05D008115 ORTHO05D010112 6.9e-79 297.7 190 84.7
Carub.0008s0112 Capsella rubella HOM05D008115 ORTHO05D010112 1.5e-78 296.6 197 81.7
C02p47870 Brassica napus HOM05D008115 ORTHO05D010112 6.4e-77 291.2 193 86.0
BolC2t10820H Brassica oleracea HOM05D008115 ORTHO05D010112 6.4e-77 291.2 193 86.0
BraA02t08049Z Brassica rapa HOM05D008115 ORTHO05D010112 9.3e-76 287.3 193 86.0
BcaC03g16890 Brassica carinata HOM05D008115 ORTHO05D010112 2.7e-75 285.8 190 85.8
CARHR174700 Cardamine hirsuta HOM05D008115 ORTHO05D010112 1.1e-73 280.4 193 77.7
A02p30340 Brassica napus HOM05D008115 ORTHO05D010112 1.9e-73 279.6 193 83.4
C09p28900 Brassica napus HOM05D008115 ORTHO05D010112 1.1e-71 273.9 158 96.8
AL8G11540 Arabidopsis lyrata HOM05D008115 ORTHO05D010112 2.0e-70 269.6 199 75.9
AT5G46795 Arabidopsis thaliana HOM05D008115 ORTHO05D010112 2.6e-70 269.2 196 76.0
C07p30110 Brassica napus HOM05D008115 ORTHO05D010112 6.7e-66 254.6 192 76.0
BolC7t43551H Brassica oleracea HOM05D008115 ORTHO05D010112 6.7e-66 254.6 192 76.0
BcaC06g34346 Brassica carinata HOM05D008115 ORTHO05D010112 2.8e-64 249.2 189 75.7
BraA09t37861Z Brassica rapa HOM05D008115 ORTHO05D010112 3.2e-52 209.1 191 69.6
Aa31LG9G6090 Aethionema arabicum HOM05D008115 ORTHO05D010112 8.8e-50 201.1 131 78.6
A06p45650 Brassica napus HOM05D008115 ORTHO05D010112 4.8e-40 168.7 105 84.8
BolC9t55752H Brassica oleracea HOM05D008115 ORTHO05D010112 8.0e-35 151.4 80 95.0
THA.LOC104806705 Tarenaya hassleriana HOM05D008115 ORTHO05D010112 8.2e-32 141.4 134 60.4
Sabra03G0061200 Salix brachista HOM05D001142 ORTHO05D003453 3.8e-21 105.9 189 41.8
Ciclev10012855m.g Citrus clementina HOM05D008115 ORTHO05D010112 1.5e-20 104.0 199 39.2
Prupe.5G036900 Prunus persica HOM05D008115 ORTHO05D010112 3.2e-20 102.8 196 39.3
Potri.003G091600 Populus trichocarpa HOM05D008115 ORTHO05D010112 6.1e-19 98.6 192 39.1
Lj2g0018003 Lotus japonicus HOM05D008115 ORTHO05D010112 8.8e-18 94.7 196 36.7
Thecc.03G228100 Theobroma cacao HOM05D008115 ORTHO05D010112 8.8e-18 94.7 188 37.2
Duzib205G0809 Durio zibethinus HOM05D008115 ORTHO05D010112 2.0e-17 93.6 188 35.1
Gorai.004G185300 Gossypium raimondii HOM05D008115 ORTHO05D010112 9.8e-17 91.3 195 36.9
Gohir.D08G177100 Gossypium hirsutum HOM05D008115 ORTHO05D010112 1.3e-16 90.9 195 36.9
CiPaw.12G063600 Carya illinoinensis HOM05D008115 ORTHO05D010112 1.7e-16 90.5 209 37.3
Gohir.A08G156700 Gossypium hirsutum HOM05D008115 ORTHO05D010112 1.7e-16 90.5 195 36.4
FAN18G3637 Fragaria x ananassa HOM05D008115 ORTHO05D010112 2.8e-16 89.7 131 46.6
QL12p005248 Quercus lobata HOM05D008115 ORTHO05D010112 4.9e-16 89.0 197 37.1
QL12p005415 Quercus lobata HOM05D008115 ORTHO05D010112 4.9e-16 89.0 197 37.1
FAN04G2182 Fragaria x ananassa HOM05D008115 ORTHO05D010112 8.3e-16 88.2 131 45.8
FAN13G1458 Fragaria x ananassa HOM05D008115 ORTHO05D010112 1.1e-15 87.8 223 39.5
PGR042G2453 Punica granatum HOM05D008115 ORTHO05D010112 1.4e-15 87.4 203 32.0
FAN08G1703 Fragaria x ananassa HOM05D008115 ORTHO05D010112 5.4e-15 85.5 131 45.0
Aqoxy3G02357 Aquilegia oxysepala HOM05D008115 ORTHO05D010112 7.0e-15 85.1 182 37.9
Sed0022703 Sechium edule HOM05D008115 ORTHO05D010112 2.0e-14 83.6 188 35.6
Medtr5g030520 Medicago truncatula HOM05D008115 ORTHO05D010112 1.0e-13 81.3 202 32.7
Glyma.09G204000 Glycine max HOM05D008115 ORTHO05D010112 3.8e-13 79.3 205 34.1
Manes.15G181340 Manihot esculenta HOM05D008115 ORTHO05D010112 1.5e-12 77.4 143 38.5
CsaV3_3G049200 Cucumis sativus L. HOM05D008115 ORTHO05D010112 1.9e-12 77.0 94 48.9
arahy.Tifrunner.gnm1.ann1.6THG3J Arachis hypogaea HOM05D008115 ORTHO05D010112 2.5e-12 76.6 194 32.5
arahy.Tifrunner.gnm1.ann1.FLG01L Arachis hypogaea HOM05D008115 ORTHO05D010112 2.5e-12 76.6 194 32.5
Dinv28956 Davidia involucrata HOM05D000381 ORTHO05D010112 5.6e-12 75.5 102 43.1
Psat2g136120 Pisum sativum HOM05D008115 ORTHO05D010112 1.2e-11 74.3 222 30.2
GSVIVG01013162001 Vitis vinifera HOM05D008115 ORTHO05D010112 4.7e-11 72.4 191 32.5
RcHm_v2.0_Chr7g0209671 Rosa chinensis HOM05D008115 ORTHO05D010112 1.4e-10 70.9 87 46.0
VMungo1215G1226 Vigna mungo HOM05D008115 ORTHO05D010112 4.4e-09 65.9 194 30.4
DCAR_005627 Daucus carota HOM05D001142 ORTHO05D003453 1.7e-08 63.9 204 33.3
Phvul.002G142000 Phaseolus vulgaris HOM05D008115 ORTHO05D010112 1.7e-08 63.9 202 30.2
AUR62018718 Chenopodium quinoa HOM05D008115 ORTHO05D010112 3.7e-08 62.8 190 32.1
TWI15G1224 Tripterygium wilfordii HOM05D008115 ORTHO05D010112 3.7e-08 62.8 89 46.1
EL10Ac5g12123 Beta vulgaris HOM05D008115 ORTHO05D010112 4.9e-08 62.4 134 32.1
TPR.G15446 Trifolium pratense HOM05D008115 ORTHO05D010112 4.9e-08 62.4 189 29.1
MELO3C030366.2 Cucumis melo HOM05D008115 ORTHO05D010112 6.4e-08 62.0 80 43.8
FvH4_5g22030 Fragaria vesca HOM05D008115 ORTHO05D010112 1.8e-07 60.5 69 56.5
Sopen02g017350 Solanum pennellii HOM05D008614 ORTHO05D010420 7.0e-07 58.5 84 35.7
BcaC06g31443 Brassica carinata HOM05D008115 ORTHO05D010112 4.6e-06 55.8 41 78.0
ECA246G5266 Erigeron canadensis HOM05D038245 ORTHO05D010112 4.6e-06 55.8 97 37.1
Lsat_1_v5_gn_3_17720 Lactuca sativa HOM05D038245 ORTHO05D010112 4.6e-06 55.8 191 26.2


User provided reference genes

Program Settings