Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p21730 Brassica napus HOM05D004950 ORTHO05D004838 6.2e-242 840.5 463 100.0
BraA09t37775Z Brassica rapa HOM05D004950 ORTHO05D004838 1.4e-140 503.8 319 89.3
Sp7g35850 Schrenkiella parvula HOM05D004950 ORTHO05D004838 2.0e-86 323.9 377 56.5
CARHR246650 Cardamine hirsuta HOM05D004950 ORTHO05D004838 1.8e-79 300.8 362 55.0
AL7G12330 Arabidopsis lyrata HOM05D004950 ORTHO05D004838 2.2e-77 293.9 385 52.5
BolC1t00104H Brassica oleracea HOM05D004950 ORTHO05D004838 2.2e-74 283.9 323 57.0
AT4G40020 Arabidopsis thaliana HOM05D004950 ORTHO05D004838 3.6e-72 276.6 333 53.8
C01p01070 Brassica napus HOM05D004950 ORTHO05D004838 2.6e-70 270.4 322 55.9
A01p00940 Brassica napus HOM05D004950 ORTHO05D004838 1.4e-68 264.6 323 54.2
BraA01t00092Z Brassica rapa HOM05D004950 ORTHO05D004838 1.4e-68 264.6 323 54.2
BcaB02g10025 Brassica carinata HOM05D004950 ORTHO05D032427 1.8e-68 264.2 311 56.3
C04p34940 Brassica napus HOM05D004950 ORTHO05D004838 3.5e-67 260.0 279 59.5
BolC4t25048H Brassica oleracea HOM05D004950 ORTHO05D004838 3.5e-67 260.0 279 59.5
Carub.0007s0199 Capsella rubella HOM05D004950 ORTHO05D004838 3.6e-64 250.0 362 48.6
THA.LOC104807862 Tarenaya hassleriana HOM05D004950 ORTHO05D004838 7.3e-57 225.7 344 45.9
Thhalv10027577m.g Eutrema salsugineum HOM05D004950 ORTHO05D004838 1.6e-56 224.6 376 46.0
BcaNung00933 Brassica carinata HOM05D004950 ORTHO05D004838 5.0e-50 203.0 324 48.1
THA.LOC104824888 Tarenaya hassleriana HOM05D004950 ORTHO05D004838 3.0e-42 177.2 398 37.9
Aa31LG6G15210 Aethionema arabicum HOM05D004950 ORTHO05D004838 9.2e-36 155.6 287 40.8
Cpa.g.sc55.78 Carica papaya HOM05D004950 ORTHO05D004838 2.5e-33 147.5 376 35.4
Dinv13228 Davidia involucrata HOM05D004950 ORTHO05D004838 2.1e-32 144.4 266 41.4
Sc16g0000220 Simmondsia chinensis HOM05D004950 ORTHO05D004838 4.4e-30 136.7 325 36.9
MD11G1200900 Malus domestica HOM05D004950 ORTHO05D004838 5.8e-30 136.3 312 33.3
Prupe.6G192500 Prunus persica HOM05D004950 ORTHO05D004838 2.1e-27 127.9 320 33.8
vmacro12982 Vaccinium macrocarpon HOM05D004950 ORTHO05D004838 6.0e-27 126.3 330 34.5
AUR62003257 Chenopodium quinoa HOM05D004950 ORTHO05D004838 3.9e-26 123.6 318 34.3
EL10As13g24047 Beta vulgaris HOM05D004950 ORTHO05D004838 6.6e-26 122.9 248 36.7
Lalb_Chr08g0230971 Lupinus albus HOM05D004950 ORTHO05D004838 1.1e-25 122.1 362 32.3
Actinidia28833 Actinidia chinensis HOM05D000288 ORTHO05D004838 1.9e-25 121.3 301 32.2
Atru.chr3.1354 Acer truncatum HOM05D004950 ORTHO05D004838 7.3e-25 119.4 361 33.0
Lj2C540T9 Lonicera japonica HOM05D004950 ORTHO05D004838 7.3e-25 119.4 300 32.3
HanXRQChr14g0445061 Helianthus annuus HOM05D004950 ORTHO05D004838 9.6e-25 119.0 256 36.7
Haze_24857 Corylus avellana HOM05D004950 ORTHO05D004838 2.1e-24 117.9 287 34.8
MELO3C017599.2 Cucumis melo HOM05D004950 ORTHO05D004838 1.8e-23 114.8 270 34.8
Lsat_1_v5_gn_2_66121 Lactuca sativa HOM05D004950 ORTHO05D004838 6.9e-23 112.8 290 32.8
ECA238G0370 Erigeron canadensis HOM05D004950 ORTHO05D004838 9.0e-23 112.5 143 45.5
TAR376G0363 Trochodendron aralioides HOM05D004950 ORTHO05D004838 1.2e-22 112.1 279 34.1
Cfa002603 Carpinus fangiana HOM05D004950 ORTHO05D004838 1.5e-22 111.7 359 31.8
CsaV3_4G004650 Cucumis sativus L. HOM05D004950 ORTHO05D004838 1.5e-22 111.7 314 33.1
CsaV3_UNG131010 Cucumis sativus L. HOM05D004950 ORTHO05D004838 1.5e-22 111.7 314 33.1
CsaV3_UNG154160 Cucumis sativus L. HOM05D004950 ORTHO05D004838 1.5e-22 111.7 314 33.1
DCAR_003473 Daucus carota HOM05D004950 ORTHO05D004838 2.0e-22 111.3 393 31.0
PGR102G2692 Punica granatum HOM05D004950 ORTHO05D004838 3.4e-22 110.5 429 28.9
Oeu033042.1 Olea europaea HOM05D004950 ORTHO05D004838 7.6e-22 109.4 401 31.9
Rhsim08G0013200 Rhododendron simsii HOM05D004950 ORTHO05D004838 9.9e-22 109.0 235 35.7
Manes.12G130350 Manihot esculenta HOM05D002324 ORTHO05D002380 1.7e-21 108.2 327 30.9
DCAR_016618 Daucus carota HOM05D004950 ORTHO05D004838 3.8e-21 107.1 340 29.7
CsaV3_UNG223520 Cucumis sativus L. HOM05D004950 ORTHO05D004838 1.1e-20 105.5 191 38.2
FAN19G3038 Fragaria x ananassa HOM05D004950 ORTHO05D004838 1.1e-20 105.5 302 29.5
TWI53G1075 Tripterygium wilfordii HOM05D004950 ORTHO05D004838 1.4e-20 105.1 127 45.7
unitig_32.g10703 Utricularia gibba HOM05D004950 ORTHO05D004838 1.4e-20 105.1 235 34.9
AUR62027212 Chenopodium quinoa HOM05D004950 ORTHO05D004838 4.2e-20 103.6 305 31.5
MD03G1184100 Malus domestica HOM05D004950 ORTHO05D004838 4.2e-20 103.6 311 29.6
PGSC0003DMG400016153 Solanum tuberosum HOM05D004950 ORTHO05D004838 9.3e-20 102.4 301 34.6
CAN.G905.19 Capsicum annuum HOM05D004950 ORTHO05D004838 1.2e-19 102.1 318 33.6
Sabra07G0079900 Salix brachista HOM05D004950 ORTHO05D004838 1.6e-19 101.7 422 28.9
Ah.02g126160 Amaranthus hybridus HOM05D004950 ORTHO05D004838 2.7e-19 100.9 395 29.1
PGSC0003DMG400016794 Solanum tuberosum HOM05D004950 ORTHO05D004838 3.5e-19 100.5 378 31.7
Lj4A899T58 Lonicera japonica HOM05D004950 ORTHO05D004838 4.6e-19 100.1 418 27.8
FAN28G2730 Fragaria x ananassa HOM05D004950 ORTHO05D004838 6.0e-19 99.8 315 29.8
FvH4_1g20290 Fragaria vesca HOM05D004950 ORTHO05D004838 7.8e-19 99.4 211 33.2
DCAR_014205 Daucus carota HOM05D004950 ORTHO05D004838 2.3e-18 97.8 340 29.4
MSTRG.3758 Avicennia marina HOM05D004950 ORTHO05D004838 3.0e-18 97.4 198 35.4
Lalb_Chr11g0075431 Lupinus albus HOM05D004950 ORTHO05D004838 1.5e-17 95.1 325 31.7
Medtr3g086890 Medicago truncatula HOM05D004950 ORTHO05D004838 2.5e-17 94.4 351 30.5
TWI74G0620 Tripterygium wilfordii HOM05D004950 ORTHO05D004838 9.6e-17 92.4 128 43.0
Oeu012397.1 Olea europaea HOM05D004950 ORTHO05D004838 1.6e-16 91.7 359 30.4
HanXRQChr14g0445041 Helianthus annuus HOM05D004950 ORTHO05D004838 1.1e-15 89.0 107 44.9
Potri.007G096600 Populus trichocarpa HOM05D004950 ORTHO05D004838 1.4e-15 88.6 162 39.5
CiPaw.04G103200 Carya illinoinensis HOM05D004950 ORTHO05D004838 1.8e-15 88.2 420 30.2
Sabra05G0059200 Salix brachista HOM05D004950 ORTHO05D004838 9.0e-15 85.9 153 39.2
CAN.G712.13 Capsicum annuum HOM05D004950 ORTHO05D004838 2.6e-14 84.3 407 27.0
Psat2g012840 Pisum sativum HOM05D004950 ORTHO05D004838 2.6e-14 84.3 353 27.5
CAN.G33.13 Capsicum annuum HOM05D004950 ORTHO05D004838 3.4e-14 84.0 105 43.8
Glyma.11G241600 Glycine max HOM05D004950 ORTHO05D004838 3.4e-14 84.0 316 29.7
Lj6g0021918 Lotus japonicus HOM05D004950 ORTHO05D004838 5.8e-14 83.2 314 29.9
Ah.03g142010 Amaranthus hybridus HOM05D004950 ORTHO05D004838 9.9e-14 82.4 292 31.5
Nitab4.5_0001874g0100 Nicotiana tabacum HOM05D004950 ORTHO05D004838 9.9e-14 82.4 249 30.5
SGA_v2.0_scaffold115G32166 Striga asiatica HOM05D004950 ORTHO05D004838 1.7e-13 81.6 258 29.8
FAN23G1536 Fragaria x ananassa HOM05D004950 ORTHO05D004838 6.4e-13 79.7 174 31.0
Peaxi162Scf00569g00049 Petunia axillaris HOM05D004950 ORTHO05D004838 6.4e-13 79.7 96 43.8
unitig_748.g8651 Utricularia gibba HOM05D004950 ORTHO05D004838 6.4e-13 79.7 407 25.8
Zm00001eb401420 Zea mays HOM05D004950 ORTHO05D004838 8.4e-13 79.3 280 30.4
BcaC01g05766 Brassica carinata HOM05D004088 ORTHO05D004736 1.1e-12 79.0 44 79.5
C03p22460 Brassica napus HOM05D004088 ORTHO05D004736 1.1e-12 79.0 44 79.5
BolC3t14642H Brassica oleracea HOM05D004088 ORTHO05D004736 1.1e-12 79.0 44 79.5
CiPaw.03G145300 Carya illinoinensis HOM05D004950 ORTHO05D004838 1.4e-12 78.6 376 26.1
Ca_16511_v3 Cicer arietinum L. HOM05D004950 ORTHO05D004838 1.9e-12 78.2 453 23.8
PSO541G5545 Papaver somniferum HOM05D004950 ORTHO05D004838 5.4e-12 76.6 194 34.5
Solyc07g009520.2 Solanum lycopersicum HOM05D004950 ORTHO05D004838 7.1e-12 76.3 235 30.6
FAN26G1097 Fragaria x ananassa HOM05D000001 ORTHO05D004838 9.3e-12 75.9 167 30.5
CSS0021212 Camellia sinensis var. sinensis HOM05D004950 ORTHO05D004838 1.2e-11 75.5 254 29.1
GSVIVG01003422001 Vitis vinifera HOM05D000001 ORTHO05D000003 1.2e-11 75.5 275 28.7
BcaB05g22612 Brassica carinata HOM05D001089 ORTHO05D000920 1.6e-11 75.1 61 60.7
PSO675G9110 Papaver somniferum HOM05D004950 ORTHO05D004838 1.6e-11 75.1 194 34.0
BraA03t11181Z Brassica rapa HOM05D004088 ORTHO05D004736 2.1e-11 74.7 128 39.8
TPR.G16026 Trifolium pratense HOM05D004950 ORTHO05D004838 2.7e-11 74.3 431 27.1
BolC2t07288H Brassica oleracea HOM05D001089 ORTHO05D000920 3.5e-11 73.9 61 60.7
PSO302G0004 Papaver somniferum HOM05D004950 ORTHO05D004838 4.6e-11 73.6 291 28.5
A02p06620 Brassica napus HOM05D001089 ORTHO05D000920 6.0e-11 73.2 61 59.0
BraA02t05744Z Brassica rapa HOM05D001089 ORTHO05D000920 6.0e-11 73.2 61 59.0
TWI60G0601 Tripterygium wilfordii HOM05D002657 ORTHO05D003059 6.0e-11 73.2 385 26.5
Zm00001eb006740 Zea mays HOM05D004950 ORTHO05D004838 6.0e-11 73.2 279 28.3
QL06p048197 Quercus lobata HOM05D004950 ORTHO05D004838 1.0e-10 72.4 401 26.2
Phvul.001G253600 Phaseolus vulgaris HOM05D004950 ORTHO05D004838 1.3e-10 72.0 312 28.2
Sp4g17030 Schrenkiella parvula HOM05D004088 ORTHO05D004736 1.3e-10 72.0 44 70.5
Sed0023595 Sechium edule HOM05D004950 ORTHO05D004838 1.3e-10 72.0 355 25.6
Zm00001eb199080 Zea mays HOM05D004950 ORTHO05D004838 2.3e-10 71.2 350 26.3
ClCG07G017420 Citrullus lanatus HOM05D004950 ORTHO05D004838 3.9e-10 70.5 281 27.8
Thhalv10013333m.g Eutrema salsugineum HOM05D001089 ORTHO05D000920 5.1e-10 70.1 65 56.9
Eucgr.H04743 Eucalyptus grandis HOM05D004950 ORTHO05D004838 6.7e-10 69.7 388 24.5
Potri.013G079000 Populus trichocarpa HOM05D002657 ORTHO05D003059 8.7e-10 69.3 210 30.5
AL8G36640 Arabidopsis lyrata HOM05D001089 ORTHO05D000920 1.1e-09 68.9 65 55.4
C02p11910 Brassica napus HOM05D001089 ORTHO05D000920 1.1e-09 68.9 61 55.7
Ciclev10026989m.g Citrus clementina HOM05D004950 ORTHO05D000003 1.1e-09 68.9 407 25.8
RcHm_v2.0_Chr2g0112431 Rosa chinensis HOM05D004950 ORTHO05D004838 1.5e-09 68.6 349 25.5
Migut.L00159 Erythranthe guttata HOM05D004950 ORTHO05D004838 1.9e-09 68.2 144 32.6
A03p19270 Brassica napus HOM05D004088 ORTHO05D004736 2.5e-09 67.8 131 38.9
Gohir.D11G054550 Gossypium hirsutum HOM05D004950 ORTHO05D004838 2.5e-09 67.8 382 25.7
Carub.0008s2075 Capsella rubella HOM05D001089 ORTHO05D000920 3.3e-09 67.4 64 56.2
Peaxi162Scf00383g01014 Petunia axillaris HOM05D004950 ORTHO05D004838 4.3e-09 67.0 313 29.4
AT5G60050 Arabidopsis thaliana HOM05D001089 ORTHO05D000920 5.6e-09 66.6 65 52.3
CARHR273670 Cardamine hirsuta HOM05D001089 ORTHO05D000920 5.6e-09 66.6 65 53.8
Dinv08856 Davidia involucrata HOM05D004950 ORTHO05D004838 7.4e-09 66.2 165 31.5
Nn1g05445 Nelumbo nucifera HOM05D004950 ORTHO05D004838 1.3e-08 65.5 309 26.2
Solyc06g072730.4 Solanum lycopersicum HOM05D002657 ORTHO05D003059 2.1e-08 64.7 221 27.6
Aqoxy6G00721 Aquilegia oxysepala HOM05D004950 ORTHO05D004838 2.8e-08 64.3 309 23.6
CARHR128890 Cardamine hirsuta HOM05D004088 ORTHO05D004736 2.8e-08 64.3 119 30.3
MBI02_g33232_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004838 2.8e-08 64.3 244 26.2
Sp6g21710 Schrenkiella parvula HOM05D001089 ORTHO05D000920 3.7e-08 63.9 46 65.2
Glyma.18G015400 Glycine max HOM05D004950 ORTHO05D004838 4.8e-08 63.5 391 26.3
Sopen11g004990 Solanum pennellii HOM05D004950 ORTHO05D004838 6.2e-08 63.2 370 28.1
Dinv29136 Davidia involucrata HOM05D002657 ORTHO05D003059 1.1e-07 62.4 160 30.0
Os08g0481100 Oryza sativa ssp. japonica HOM05D004950 ORTHO05D004838 1.1e-07 62.4 318 26.4
PSO063G0986 Papaver somniferum HOM05D002657 ORTHO05D003059 1.1e-07 62.4 362 24.9
VMungo1383G3674 Vigna mungo HOM05D004950 ORTHO05D004838 1.1e-07 62.4 287 26.8
Cc07_g14660 Coffea canephora HOM05D004950 ORTHO05D004838 2.4e-07 61.2 163 31.9
SalBow5G3597 Salvia bowleyana HOM05D004950 ORTHO05D004838 3.1e-07 60.8 277 26.0
HanXRQChr10g0314761 Helianthus annuus HOM05D004950 ORTHO05D004838 4.0e-07 60.5 246 24.8
AL7G13610 Arabidopsis lyrata HOM05D004950 ORTHO05D004838 5.3e-07 60.1 163 38.0
BcaC06g30910 Brassica carinata HOM05D000126 ORTHO05D000085 9.0e-07 59.3 58 63.8
Gohir.A11G303100 Gossypium hirsutum HOM05D002657 ORTHO05D003059 9.0e-07 59.3 350 26.0
Zm00001eb081260 Zea mays HOM05D020839 ORTHO05D004838 9.0e-07 59.3 284 25.7
Thhalv10012674m.g Eutrema salsugineum HOM05D002657 ORTHO05D003059 1.5e-06 58.5 241 27.0
AL4G30720 Arabidopsis lyrata HOM05D004088 ORTHO05D004736 2.0e-06 58.2 199 26.1
A06p40440 Brassica napus HOM05D000126 ORTHO05D000085 2.0e-06 58.2 58 63.8
A06p40460 Brassica napus HOM05D000126 ORTHO05D000085 2.0e-06 58.2 57 63.2
BraA06t26962Z Brassica rapa HOM05D000126 ORTHO05D000085 2.0e-06 58.2 58 63.8
BraA06t26964Z Brassica rapa HOM05D000126 ORTHO05D000085 2.0e-06 58.2 57 63.2
Thhalv10017542m.g Eutrema salsugineum HOM05D004088 ORTHO05D004736 2.6e-06 57.8 127 27.6
BcaC06g30905 Brassica carinata HOM05D000126 ORTHO05D000085 3.4e-06 57.4 58 62.1
BcaC06g30907 Brassica carinata HOM05D000126 ORTHO05D000085 3.4e-06 57.4 58 62.1
Gohir.A11G204800 Gossypium hirsutum HOM05D004950 ORTHO05D004838 4.5e-06 57.0 383 25.6
HanXRQChr14g0445051 Helianthus annuus HOM05D004950 ORTHO05D004838 4.5e-06 57.0 166 28.9
HanXRQChr17g0546381 Helianthus annuus HOM05D004950 ORTHO05D004838 4.5e-06 57.0 70 40.0
Aa31LG10G6600 Aethionema arabicum HOM05D004088 ORTHO05D004736 5.8e-06 56.6 44 56.8
CANSAT01G1426 Cannabis sativa HOM05D004950 ORTHO05D004838 5.8e-06 56.6 374 24.9
Sp6g27420 Schrenkiella parvula HOM05D002657 ORTHO05D003059 5.8e-06 56.6 269 27.5
Gorai.007G348400 Gossypium raimondii HOM05D002657 ORTHO05D003059 7.6e-06 56.2 336 24.7
Aqoxy3G02354 Aquilegia oxysepala HOM05D002657 ORTHO05D003059 9.9e-06 55.8 309 25.9
AUR62033085 Chenopodium quinoa HOM05D001089 ORTHO05D000920 9.9e-06 55.8 62 43.5


User provided reference genes

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