Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 7.6e-159 563.9 312 100.0
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 1.1e-154 550.1 316 96.5
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 5.8e-151 537.7 316 95.3
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 2.1e-140 502.7 312 84.9
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 7.6e-135 484.2 315 77.8
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 2.7e-132 475.7 315 75.9
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 9.0e-128 460.7 315 81.0
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 1.5e-127 459.9 315 76.2
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 1.5e-127 459.9 315 76.2
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 1.0e-126 457.2 315 75.9
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 3.8e-126 455.3 316 78.8
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 1.9e-125 453.0 315 80.3
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 3.7e-121 438.7 319 69.3
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 9.0e-120 434.1 318 68.9
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 5.9e-119 431.4 313 68.4
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 1.1e-117 427.2 317 68.5
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 9.4e-101 370.9 337 57.6
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 1.0e-99 367.5 345 56.8
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 3.8e-86 322.4 340 50.9
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 1.5e-85 320.5 322 53.1
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 2.8e-84 316.2 325 55.4
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 2.8e-84 316.2 325 55.4
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 6.1e-84 315.1 326 50.0
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 8.0e-84 314.7 327 55.0
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 1.8e-83 313.5 325 55.7
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 2.3e-83 313.2 334 50.6
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 3.0e-83 312.8 318 51.9
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 5.2e-83 312.0 325 49.8
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 5.2e-83 312.0 331 54.7
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 8.8e-83 311.2 319 50.8
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 1.2e-82 310.8 323 50.8
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 1.5e-82 310.5 323 50.8
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 2.0e-82 310.1 317 50.2
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 2.0e-82 310.1 317 51.1
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 2.6e-82 309.7 317 51.4
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 4.4e-82 308.9 329 50.8
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 4.4e-82 308.9 329 50.8
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 7.5e-82 308.1 325 54.5
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 1.7e-81 307.0 329 50.8
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 2.2e-81 306.6 326 54.0
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 2.8e-81 306.2 332 53.6
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 4.9e-81 305.4 349 51.0
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 8.3e-81 304.7 316 51.3
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 1.1e-80 304.3 320 51.6
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 2.4e-80 303.1 316 52.2
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 2.4e-80 303.1 254 57.5
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 2.4e-80 303.1 331 54.1
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 2.4e-80 303.1 327 50.2
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 3.1e-80 302.8 325 51.1
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 3.1e-80 302.8 320 50.3
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 4.1e-80 302.4 328 51.2
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 4.1e-80 302.4 331 48.6
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 5.4e-80 302.0 332 50.3
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 7.0e-80 301.6 328 53.7
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 1.0e-78 297.7 331 48.0
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 2.3e-78 296.6 361 46.0
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 2.3e-78 296.6 324 48.5
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 2.3e-78 296.6 342 47.4
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 3.8e-78 295.8 319 49.8
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 8.6e-78 294.7 336 48.5
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.1e-77 294.3 264 54.9
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 1.1e-77 294.3 323 48.6
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 1.5e-77 293.9 343 48.1
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 2.5e-77 293.1 336 47.9
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 2.5e-77 293.1 318 48.4
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 2.5e-77 293.1 336 48.2
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 3.3e-77 292.7 274 54.0
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 4.3e-77 292.4 273 54.6
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 1.2e-76 290.8 270 54.4
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 2.1e-76 290.0 330 48.5
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 4.7e-76 288.9 331 48.0
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 6.1e-76 288.5 326 47.5
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 1.0e-75 287.7 263 54.4
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.0e-75 287.7 329 48.0
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 3.0e-75 286.2 326 48.2
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 3.0e-75 286.2 266 53.4
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 4.0e-75 285.8 331 51.4
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 5.2e-75 285.4 317 48.6
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 2.0e-74 283.5 327 47.7
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 2.6e-74 283.1 348 45.7
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 2.6e-74 283.1 254 55.1
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 2.6e-74 283.1 259 54.4
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 9.8e-74 281.2 259 54.1
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 1.3e-73 280.8 281 51.2
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 1.7e-73 280.4 322 45.3
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 8.3e-73 278.1 271 52.4
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 2.4e-72 276.6 355 44.5
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 7.0e-72 275.0 254 53.1
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 7.0e-72 275.0 256 53.1
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 9.2e-72 274.6 282 50.0
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 2.0e-71 273.5 266 52.6
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 2.7e-71 273.1 251 55.4
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 7.8e-71 271.6 335 46.0
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 1.3e-70 270.8 293 49.1
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 6.6e-70 268.5 335 45.1
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 6.6e-70 268.5 330 46.7
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 8.6e-70 268.1 329 44.1
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 7.3e-69 265.0 271 50.2
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 1.0e-67 261.2 357 42.0
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.8e-67 260.4 249 53.4
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 4.0e-67 259.2 326 44.8
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 4.0e-67 259.2 338 45.3
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 5.8e-66 255.4 224 54.0
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 5.8e-66 255.4 294 47.3
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 6.0e-63 245.4 240 55.4
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 1.3e-62 244.2 310 44.5
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 2.3e-62 243.4 255 48.2
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 1.5e-61 240.7 210 55.2
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 5.6e-61 238.8 207 55.6
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 7.3e-61 238.4 270 45.9
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 6.2e-60 235.3 339 40.4
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 6.8e-59 231.9 316 41.5
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.2e-55 221.1 265 44.5
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 3.9e-54 216.1 159 61.6
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 2.5e-53 213.4 178 58.4
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 4.3e-53 212.6 261 41.8
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 2.9e-49 199.9 262 40.5
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 3.3e-45 186.4 228 42.1
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 6.9e-43 178.7 181 54.1
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.2e-42 177.9 273 39.2
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 5.8e-42 175.6 167 49.1
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 6.4e-41 172.2 174 48.9
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 8.4e-41 171.8 341 35.5
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 5.1e-30 136.0 269 34.2
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 6.7e-30 135.6 150 48.7
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 7.6e-26 122.1 153 43.1
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 3.7e-20 103.2 152 37.5
Cpa.g.c37165 Carica papaya HOM05D005374 ORTHO05D006534 6.2e-20 102.4 118 50.8
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 2.9e-17 93.6 80 52.5
THA.LOC104811124 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 1.1e-16 91.7 59 69.5
vmacro14240 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 1.6e-15 87.8 121 44.6
CAN.G1511.1 Capsicum annuum HOM05D005374 ORTHO05D006534 1.3e-12 78.2 59 64.4
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 3.7e-12 76.6 114 37.7
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 3.1e-11 73.6 52 55.8
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 2.6e-10 70.5 100 42.0
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 5.0e-09 66.2 102 34.3


User provided reference genes

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