Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p21180 Brassica napus HOM05D005256 ORTHO05D006491 3.4e-91 339.0 267 100.0
BraA09t37724Z Brassica rapa HOM05D005256 ORTHO05D006491 3.4e-91 339.0 267 100.0
BcaC04g21824 Brassica carinata HOM05D005256 ORTHO05D006491 1.7e-87 326.6 267 81.3
C09p27010 Brassica napus HOM05D005256 ORTHO05D006491 1.7e-87 326.6 267 81.3
BolC9t55584H Brassica oleracea HOM05D005256 ORTHO05D006491 1.7e-87 326.6 267 81.3
BcaB07g30940 Brassica carinata HOM05D005256 ORTHO05D006491 8.4e-74 281.2 270 80.4
A06p47070 Brassica napus HOM05D005256 ORTHO05D006491 2.4e-60 236.5 153 81.0
BraA06t27579Z Brassica rapa HOM05D005256 ORTHO05D006491 2.4e-60 236.5 153 81.0
BcaC06g34533 Brassica carinata HOM05D005256 ORTHO05D006491 3.1e-60 236.1 153 80.4
C07p27480 Brassica napus HOM05D005256 ORTHO05D006491 4.0e-60 235.7 153 80.4
BcaB07g30517 Brassica carinata HOM05D005256 ORTHO05D006491 5.3e-60 235.3 155 80.6
BolC7t43278H Brassica oleracea HOM05D005256 ORTHO05D006491 2.0e-59 233.4 153 79.7
Sp2g09430 Schrenkiella parvula HOM05D005256 ORTHO05D006491 1.9e-57 226.9 155 78.1
C02p45090 Brassica napus HOM05D005256 ORTHO05D006491 2.6e-51 206.5 155 73.5
BolC2t10548H Brassica oleracea HOM05D005256 ORTHO05D006491 2.6e-51 206.5 155 73.5
Aa31LG9G8540 Aethionema arabicum HOM05D005256 ORTHO05D006491 3.4e-43 179.5 157 62.4
C07p50830 Brassica napus HOM05D005256 ORTHO05D006491 2.2e-42 176.8 162 64.2
Sp7g18620 Schrenkiella parvula HOM05D005256 ORTHO05D006491 3.8e-42 176.0 154 66.9
AL7G33640 Arabidopsis lyrata HOM05D005256 ORTHO05D006491 8.5e-42 174.9 154 64.9
CARHR227090 Cardamine hirsuta HOM05D005256 ORTHO05D006491 3.2e-41 172.9 159 64.2
Thhalv10026094m.g Eutrema salsugineum HOM05D005256 ORTHO05D006491 3.2e-41 172.9 153 64.1
A01p11960 Brassica napus HOM05D005256 ORTHO05D006491 4.2e-41 172.6 153 66.7
BraA01t01138Z Brassica rapa HOM05D005256 ORTHO05D006491 4.2e-41 172.6 155 65.8
BolC7t45581H Brassica oleracea HOM05D005256 ORTHO05D006491 9.4e-41 171.4 155 65.8
THA.LOC104812925 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 9.4e-41 171.4 151 62.9
BcaC09g51326 Brassica carinata HOM05D005256 ORTHO05D006491 1.2e-40 171.0 154 65.6
C01p14230 Brassica napus HOM05D005256 ORTHO05D006491 1.2e-40 171.0 154 65.6
BolC1t01388H Brassica oleracea HOM05D005256 ORTHO05D006491 1.2e-40 171.0 154 65.6
Aa31LG6G2690 Aethionema arabicum HOM05D005256 ORTHO05D006491 1.6e-40 170.6 160 60.6
BcaC06g30648 Brassica carinata HOM05D005256 ORTHO05D006491 2.1e-40 170.2 154 64.3
A03p52380 Brassica napus HOM05D005256 ORTHO05D006491 2.1e-40 170.2 155 65.2
BraA03t14315Z Brassica rapa HOM05D005256 ORTHO05D006491 2.7e-40 169.9 154 64.3
AT4G20260 Arabidopsis thaliana HOM05D005256 ORTHO05D006491 1.0e-39 167.9 154 63.6
Carub.0007s2091 Capsella rubella HOM05D005256 ORTHO05D006491 1.4e-39 167.5 150 63.3
BcaNung03497 Brassica carinata HOM05D005256 ORTHO05D006491 3.9e-39 166.0 154 64.3
THA.LOC104811953 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 5.1e-39 165.6 141 62.4
Sabra03G0114000 Salix brachista HOM05D005256 ORTHO05D006491 6.9e-36 155.2 154 57.1
Potri.003G157100 Populus trichocarpa HOM05D005256 ORTHO05D006491 9.1e-36 154.8 140 60.0
Cpa.g.sc30.65 Carica papaya HOM05D005256 ORTHO05D006491 2.0e-35 153.7 157 54.8
Nn1g09867 Nelumbo nucifera HOM05D005256 ORTHO05D006491 2.0e-35 153.7 145 56.6
TWI63G0333 Tripterygium wilfordii HOM05D005256 ORTHO05D006491 2.0e-35 153.7 176 51.1
CSS0021462 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 3.4e-35 152.9 140 57.1
BcaNung03716 Brassica carinata HOM05D005256 ORTHO05D006491 5.9e-35 152.1 150 63.3
Ciclev10016618m.g Citrus clementina HOM05D005256 ORTHO05D006491 7.7e-35 151.8 140 57.9
Atru.chr10.203 Acer truncatum HOM05D005256 ORTHO05D006491 1.7e-34 150.6 160 54.4
Sabra01G0052200 Salix brachista HOM05D005256 ORTHO05D006491 3.8e-34 149.4 152 55.9
Manes.16G060225 Manihot esculenta HOM05D005256 ORTHO05D006491 6.5e-34 148.7 135 61.5
Eucgr.D00001 Eucalyptus grandis HOM05D005256 ORTHO05D006491 1.1e-33 147.9 151 56.3
vmacro03574 Vaccinium macrocarpon HOM05D005256 ORTHO05D006491 1.1e-33 147.9 140 57.9
AUR62040985 Chenopodium quinoa HOM05D005256 ORTHO05D006491 1.4e-33 147.5 162 53.1
Haze_05185 Corylus avellana HOM05D005256 ORTHO05D006491 2.5e-33 146.7 152 55.9
Glyma.15G154700 Glycine max HOM05D005256 ORTHO05D006491 4.2e-33 146.0 152 55.9
Glyma.09G047200 Glycine max HOM05D005256 ORTHO05D006491 5.5e-33 145.6 151 55.6
GSVIVG01001340001 Vitis vinifera HOM05D005256 ORTHO05D006491 7.2e-33 145.2 140 57.1
EL10Ac7g17298 Beta vulgaris HOM05D005256 ORTHO05D006491 9.4e-33 144.8 162 50.0
Dinv07938 Davidia involucrata HOM05D005256 ORTHO05D006491 9.4e-33 144.8 137 56.2
Dinv18415 Davidia involucrata HOM05D005256 ORTHO05D006491 9.4e-33 144.8 137 56.2
QL11p010746 Quercus lobata HOM05D005256 ORTHO05D006491 1.6e-32 144.1 157 53.5
ATR0737G015 Amborella trichopoda HOM05D005256 ORTHO05D006491 2.1e-32 143.7 158 54.4
CiPaw.09G140800 Carya illinoinensis HOM05D005256 ORTHO05D006491 2.1e-32 143.7 137 54.7
Medtr2g437530 Medicago truncatula HOM05D005256 ORTHO05D006491 2.1e-32 143.7 159 52.2
Peaxi162Scf00888g00114 Petunia axillaris HOM05D005256 ORTHO05D006491 2.1e-32 143.7 142 53.5
TAR626G1126 Trochodendron aralioides HOM05D005256 ORTHO05D006491 2.1e-32 143.7 134 56.7
CSS0003949 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 2.7e-32 143.3 136 55.1
TPR.G31382 Trifolium pratense HOM05D005256 ORTHO05D006491 2.7e-32 143.3 152 53.9
CAN.G465.5 Capsicum annuum HOM05D005256 ORTHO05D006491 3.6e-32 142.9 139 53.2
Psat1g152160 Pisum sativum HOM05D005256 ORTHO05D006491 4.7e-32 142.5 152 52.6
Potri.001G073900 Populus trichocarpa HOM05D005256 ORTHO05D006491 6.1e-32 142.1 159 52.8
Rhsim13G0136300 Rhododendron simsii HOM05D005256 ORTHO05D006491 6.1e-32 142.1 156 52.6
arahy.Tifrunner.gnm1.ann1.98CSRD Arachis hypogaea HOM05D005256 ORTHO05D006491 1.0e-31 141.4 138 55.1
arahy.Tifrunner.gnm1.ann1.QDE700 Arachis hypogaea HOM05D005256 ORTHO05D006491 1.4e-31 141.0 137 55.5
Nitab4.5_0004778g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 1.8e-31 140.6 140 53.6
Phvul.009G245700 Phaseolus vulgaris HOM05D005256 ORTHO05D006491 1.8e-31 140.6 154 51.9
Oeu052922.1 Olea europaea HOM05D005256 ORTHO05D006491 2.3e-31 140.2 140 51.4
Ca_02405_v3 Cicer arietinum L. HOM05D005256 ORTHO05D006491 3.0e-31 139.8 160 51.9
Hund20133 Selenicereus undatus HOM05D005256 ORTHO05D006491 3.0e-31 139.8 160 47.5
CANSAT35G0328 Cannabis sativa HOM05D005256 ORTHO05D006491 3.9e-31 139.4 140 52.9
Lalb_Chr18g0051841 Lupinus albus HOM05D005256 ORTHO05D006491 5.1e-31 139.0 157 52.9
Oeu005126.1 Olea europaea HOM05D005256 ORTHO05D006491 1.5e-30 137.5 160 48.8
Ah.15g091820 Amaranthus hybridus HOM05D005256 ORTHO05D006491 2.0e-30 137.1 161 48.4
CDE10G1097 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 2.6e-30 136.7 142 52.8
TAR624G1249 Trochodendron aralioides HOM05D005256 ORTHO05D006491 2.6e-30 136.7 158 51.9
CDE02G1470 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 3.3e-30 136.3 137 51.8
Lj6g0014214 Lotus japonicus HOM05D005256 ORTHO05D006491 3.3e-30 136.3 151 53.0
Sc17g0004300 Simmondsia chinensis HOM05D005256 ORTHO05D006491 3.3e-30 136.3 143 54.5
Sopen10g001120 Solanum pennellii HOM05D005256 ORTHO05D006491 4.4e-30 136.0 148 50.0
Lsat_1_v5_gn_2_59820 Lactuca sativa HOM05D005256 ORTHO05D006491 5.7e-30 135.6 152 50.7
MD10G1224100 Malus domestica HOM05D005256 ORTHO05D006491 5.7e-30 135.6 153 52.9
MBI07_g44405_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 7.4e-30 135.2 161 50.3
Lalb_Chr15g0083621 Lupinus albus HOM05D005256 ORTHO05D006491 1.7e-29 134.0 137 54.7
MD05G1242300 Malus domestica HOM05D005256 ORTHO05D006491 1.7e-29 134.0 150 51.3
Solyc10g005100.3 Solanum lycopersicum HOM05D005256 ORTHO05D006491 1.7e-29 134.0 158 48.1
CDE10G0480 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 2.2e-29 133.7 142 52.1
HPP92_008810 Vanilla planifolia HOM05D005256 ORTHO05D006491 2.8e-29 133.3 133 56.4
VMungo1309G1298 Vigna mungo HOM05D005256 ORTHO05D006491 2.8e-29 133.3 135 53.3
COL.COLO4_25022 Corchorus olitorius HOM05D005256 ORTHO05D006491 3.7e-29 132.9 135 54.8
Hma1.2p1_0082F.1_g042560 Hydrangea macrophylla HOM05D005256 ORTHO05D006491 1.4e-28 131.0 165 46.7
CiPaw.10G108500 Carya illinoinensis HOM05D005256 ORTHO05D006491 4.1e-28 129.4 137 51.1
Prupe.4G121100 Prunus persica HOM05D005256 ORTHO05D006491 9.1e-28 128.3 137 53.3
Thecc.02G000700 Theobroma cacao HOM05D005256 ORTHO05D006491 9.1e-28 128.3 128 54.7
MSTRG.14820 Avicennia marina HOM05D005256 ORTHO05D006491 2.6e-27 126.7 156 47.4
PSO541G2657 Papaver somniferum HOM05D005256 ORTHO05D006491 2.6e-27 126.7 154 48.7
RcHm_v2.0_Chr5g0022081 Rosa chinensis HOM05D005256 ORTHO05D006491 3.5e-27 126.3 154 50.6
Migut.L00006 Erythranthe guttata HOM05D005256 ORTHO05D006491 4.5e-27 125.9 132 50.8
PGSC0003DMG400011293 Solanum tuberosum HOM05D005256 ORTHO05D006491 4.5e-27 125.9 161 46.0
MBI06_g04184_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 5.9e-27 125.6 157 46.5
PSO675G8904 Papaver somniferum HOM05D005256 ORTHO05D006491 5.9e-27 125.6 154 48.7
FvH4_3g13370 Fragaria vesca HOM05D005256 ORTHO05D006491 7.7e-27 125.2 153 47.7
FAN11G1371 Fragaria x ananassa HOM05D005256 ORTHO05D006491 7.7e-27 125.2 153 47.7
FAN16G0515 Fragaria x ananassa HOM05D005256 ORTHO05D006491 1.0e-26 124.8 140 48.6
Cc09_g04590 Coffea canephora HOM05D005256 ORTHO05D006491 1.3e-26 124.4 134 50.7
FAN21G0853 Fragaria x ananassa HOM05D005256 ORTHO05D006491 1.3e-26 124.4 153 47.7
ECA232G1901 Erigeron canadensis HOM05D005256 ORTHO05D006491 1.7e-26 124.0 132 54.5
FAN25G1093 Fragaria x ananassa HOM05D005256 ORTHO05D006491 2.2e-26 123.6 153 47.1
SalBow7G1744 Salvia bowleyana HOM05D005256 ORTHO05D006491 3.8e-26 122.9 132 50.8
Lsat_1_v5_gn_8_107621 Lactuca sativa HOM05D005256 ORTHO05D006491 6.5e-26 122.1 132 51.5
AUR62042105 Chenopodium quinoa HOM05D005256 ORTHO05D006491 2.5e-25 120.2 168 47.0
HanXRQChr14g0439031 Helianthus annuus HOM05D005256 ORTHO05D006491 3.2e-25 119.8 154 46.8
ECA238G2220 Erigeron canadensis HOM05D005256 ORTHO05D006491 1.6e-24 117.5 134 50.0
CDE09G1225 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 3.6e-24 116.3 140 45.7
HanXRQChr15g0487481 Helianthus annuus HOM05D005256 ORTHO05D006491 3.6e-24 116.3 132 50.0
FAN25G0981 Fragaria x ananassa HOM05D005256 ORTHO05D006491 6.1e-24 115.5 150 45.3
Nitab4.5_0000217g0040 Nicotiana tabacum HOM05D005256 ORTHO05D006491 1.8e-23 114.0 132 47.7
Peaxi162Scf01310g00311 Petunia axillaris HOM05D005256 ORTHO05D006491 3.0e-23 113.2 137 48.2
Nitab4.5_0012748g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 8.2e-21 105.1 103 54.4
HanXRQChr09g0257711 Helianthus annuus HOM05D005256 ORTHO05D006491 1.8e-20 104.0 132 47.7
Os02g0285300 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 4.1e-20 102.8 138 43.5
MBI06_g26562_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 3.8e-18 96.3 113 48.7
Nitab4.5_0001253g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 6.5e-18 95.5 132 44.7
DCAR_003732 Daucus carota HOM05D005256 ORTHO05D006491 1.1e-17 94.7 132 43.2
Zm00001eb119130 Zea mays HOM05D005256 ORTHO05D006491 7.2e-17 92.0 134 42.5
Zm00001eb236850 Zea mays HOM05D005256 ORTHO05D006491 2.1e-16 90.5 108 44.4
Os01g0233000 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 4.7e-16 89.4 148 42.6
Zm00001eb339340 Zea mays HOM05D005256 ORTHO05D006491 5.2e-15 85.9 158 38.6
A02p28470 Brassica napus HOM05D005256 ORTHO05D014960 5.7e-14 82.4 181 58.6
BraA02t07882Z Brassica rapa HOM05D005256 ORTHO05D023626 7.5e-14 82.0 182 58.8
Lsat_1_v5_gn_9_9820 Lactuca sativa HOM05D005256 ORTHO05D006491 1.0e-10 71.6 137 37.2
Lalb_Chr20g0114421 Lupinus albus HOM05D005256 ORTHO05D006491 6.5e-10 68.9 89 49.4
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 2.5e-09 67.0 155 34.2
Zm00001eb381370 Zea mays HOM05D005256 ORTHO05D006491 1.4e-07 61.2 61 55.7


User provided reference genes

Program Settings