Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p20650 Brassica napus HOM05D009495 ORTHO05D004704 1.2e-83 313.2 160 100.0
BraA09t37669Z Brassica rapa HOM05D009495 ORTHO05D004704 1.2e-83 313.2 160 100.0
C09p26070 Brassica napus HOM05D009495 ORTHO05D004704 1.4e-71 273.1 193 77.2
BolC9t55510H Brassica oleracea HOM05D009495 ORTHO05D004704 1.4e-71 273.1 193 77.2
BcaC04g21895 Brassica carinata HOM05D009495 ORTHO05D004704 5.8e-62 241.1 147 85.0
A04p10030 Brassica napus HOM05D009495 ORTHO05D004704 2.3e-55 219.2 196 63.3
BraA04t16665Z Brassica rapa HOM05D009495 ORTHO05D004704 2.3e-55 219.2 196 63.3
BcaC02g09504 Brassica carinata HOM05D009495 ORTHO05D004704 5.8e-54 214.5 196 62.2
C04p43510 Brassica napus HOM05D009495 ORTHO05D004704 3.7e-53 211.8 196 61.7
Thhalv10005712m.g Eutrema salsugineum HOM05D009495 ORTHO05D004704 5.1e-50 201.4 191 60.2
BcaB02g08048 Brassica carinata HOM05D009495 ORTHO05D004704 7.3e-49 197.6 167 67.1
Sp7g06260 Schrenkiella parvula HOM05D009495 ORTHO05D004704 4.4e-46 188.3 191 61.3
AT5G35870 Arabidopsis thaliana HOM05D009495 ORTHO05D004704 2.4e-44 182.6 199 56.3
CARHR216740 Cardamine hirsuta HOM05D009495 ORTHO05D004704 7.1e-44 181.0 193 57.0
Carub.0007s3167 Capsella rubella HOM05D009495 ORTHO05D004704 3.9e-42 175.3 203 54.2
AL7G44750 Arabidopsis lyrata HOM05D009495 ORTHO05D004704 5.4e-36 154.8 171 53.8
Aa31sc203G20 Aethionema arabicum HOM05D009495 ORTHO05D004704 1.2e-30 137.1 196 45.9
AT2G04480 Arabidopsis thaliana HOM05D009495 ORTHO05D004704 2.7e-19 99.4 181 38.1
AL3G42130 Arabidopsis lyrata HOM05D009495 ORTHO05D004704 3.0e-18 95.9 184 37.5
CARHR102390 Cardamine hirsuta HOM05D009495 ORTHO05D004704 8.7e-18 94.4 172 36.6
Thhalv10002998m.g Eutrema salsugineum HOM05D009495 ORTHO05D004704 1.1e-17 94.0 165 37.6
Sp3g23270 Schrenkiella parvula HOM05D009495 ORTHO05D004704 4.3e-17 92.0 143 41.3
BcaB06g26787 Brassica carinata HOM05D009495 ORTHO05D004704 6.2e-16 88.2 183 34.4
BcaC06g35871 Brassica carinata HOM05D009495 ORTHO05D004704 3.1e-15 85.9 186 34.9
C07p10220 Brassica napus HOM05D009495 ORTHO05D004704 3.1e-15 85.9 186 34.9
BolC7t41473H Brassica oleracea HOM05D009495 ORTHO05D004704 3.1e-15 85.9 186 34.9
BraA07t28463Z Brassica rapa HOM05D009495 ORTHO05D004704 1.2e-14 84.0 196 33.7
A07p06700 Brassica napus HOM05D009495 ORTHO05D004704 1.5e-14 83.6 196 33.2
Carub.0003s2613 Capsella rubella HOM05D009495 ORTHO05D004704 3.4e-14 82.4 97 48.5
TPR.G35904 Trifolium pratense HOM05D005849 ORTHO05D004704 7.6e-14 81.3 109 45.0
THA.LOC104808845 Tarenaya hassleriana HOM05D005849 ORTHO05D004704 1.1e-12 77.4 96 49.0
Thecc.01G196200 Theobroma cacao HOM05D005849 ORTHO05D004704 7.1e-12 74.7 96 49.0
DCAR_019680 Daucus carota HOM05D005849 ORTHO05D004704 1.2e-11 73.9 74 54.1
TWI36G1699 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 1.2e-11 73.9 82 51.2
Manes.12G064702 Manihot esculenta HOM05D005849 ORTHO05D004704 6.1e-11 71.6 97 44.3
Sabra14G0127500 Salix brachista HOM05D005849 ORTHO05D004704 1.0e-10 70.9 98 41.8
Potri.014G167700 Populus trichocarpa HOM05D005849 ORTHO05D004704 1.8e-10 70.1 114 37.7
Duzib138G1177 Durio zibethinus HOM05D005849 ORTHO05D004704 2.3e-10 69.7 88 47.7
Lj8P136T22 Lonicera japonica HOM05D005849 ORTHO05D004704 3.0e-10 69.3 143 37.8
Duzib133G0645 Durio zibethinus HOM05D005849 ORTHO05D004704 5.1e-10 68.6 96 46.9
Psat5g104280 Pisum sativum HOM05D005849 ORTHO05D004704 5.1e-10 68.6 176 34.7
Gohir.A07G169800 Gossypium hirsutum HOM05D005849 ORTHO05D004704 6.7e-10 68.2 127 39.4
THA.LOC104815364 Tarenaya hassleriana HOM05D005849 ORTHO05D004704 6.7e-10 68.2 82 53.7
Cfa014225 Carpinus fangiana HOM05D005849 ORTHO05D004704 8.7e-10 67.8 95 43.2
CiPaw.04G197000 Carya illinoinensis HOM05D005849 ORTHO05D004704 8.7e-10 67.8 88 47.7
Haze_12628 Corylus avellana HOM05D005849 ORTHO05D004704 8.7e-10 67.8 95 43.2
Gorai.001G191400 Gossypium raimondii HOM05D005849 ORTHO05D004704 1.1e-09 67.4 86 45.3
VMungo0540G2501 Vigna mungo HOM05D005849 ORTHO05D004704 1.1e-09 67.4 77 49.4
Prupe.3G197400 Prunus persica HOM05D005849 ORTHO05D004704 1.9e-09 66.6 99 40.4
Sed0027972 Sechium edule HOM05D005849 ORTHO05D004704 1.9e-09 66.6 86 47.7
TWI18G0644 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 1.9e-09 66.6 87 48.3
Glyma.13G006500 Glycine max HOM05D005849 ORTHO05D004704 2.5e-09 66.2 132 37.1
Medtr3g082780 Medicago truncatula HOM05D005849 ORTHO05D004704 2.5e-09 66.2 82 42.7
Psat2g002880 Pisum sativum HOM05D005849 ORTHO05D004704 2.5e-09 66.2 83 50.6
RcHm_v2.0_Chr2g0155981 Rosa chinensis HOM05D005849 ORTHO05D004704 2.5e-09 66.2 94 43.6
Gohir.D07G171100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 3.3e-09 65.9 87 46.0
Actinidia07866 Actinidia chinensis HOM05D005849 ORTHO05D004704 4.3e-09 65.5 102 40.2
Cc03_g07410 Coffea canephora HOM05D005849 ORTHO05D004704 4.3e-09 65.5 128 39.8
MD17G1117100 Malus domestica HOM05D005849 ORTHO05D004704 4.3e-09 65.5 104 38.5
CsaV3_6G009640 Cucumis sativus L. HOM05D005849 ORTHO05D004704 5.7e-09 65.1 87 43.7
TPR.G11064 Trifolium pratense HOM05D005849 ORTHO05D004704 5.7e-09 65.1 114 42.1
MELO3C025957.2 Cucumis melo HOM05D005849 ORTHO05D004704 7.4e-09 64.7 89 42.7
Phvul.007G121090 Phaseolus vulgaris HOM05D005849 ORTHO05D004704 7.4e-09 64.7 105 39.0
PGR083G2364 Punica granatum HOM05D005849 ORTHO05D004704 9.7e-09 64.3 85 48.2
QL04p068477 Quercus lobata HOM05D005849 ORTHO05D004704 9.7e-09 64.3 91 42.9
CiPaw.03G281900 Carya illinoinensis HOM05D005849 ORTHO05D004704 1.6e-08 63.5 93 44.1
Lsat_1_v5_gn_9_103781 Lactuca sativa HOM05D005849 ORTHO05D004704 2.2e-08 63.2 84 45.2
TAR629G2787 Trochodendron aralioides HOM05D005849 ORTHO05D004704 2.2e-08 63.2 79 46.8
ATR0827G126 Amborella trichopoda HOM05D005849 ORTHO05D004704 2.8e-08 62.8 106 34.9
AUR62015005 Chenopodium quinoa HOM05D005849 ORTHO05D004704 3.7e-08 62.4 117 34.2
Sc20g0004000 Simmondsia chinensis HOM05D005849 ORTHO05D004704 3.7e-08 62.4 80 46.2
Ca_06483_v3 Cicer arietinum L. HOM05D005849 ORTHO05D004704 4.8e-08 62.0 77 51.9
COL.COLO4_19617 Corchorus olitorius HOM05D005849 ORTHO05D004704 4.8e-08 62.0 96 40.6
MBI16_g22138_MAGBIO Magnolia biondii HOM05D005849 ORTHO05D004704 4.8e-08 62.0 81 45.7
Manes.13G061900 Manihot esculenta HOM05D005849 ORTHO05D004704 4.8e-08 62.0 86 45.3
Ciclev10018021m.g Citrus clementina HOM05D005849 ORTHO05D004704 6.3e-08 61.6 101 43.6
ECA240G3450 Erigeron canadensis HOM05D005849 ORTHO05D004704 6.3e-08 61.6 76 47.4
Rhsim06G0176600 Rhododendron simsii HOM05D005849 ORTHO05D004704 6.3e-08 61.6 123 39.0
MD09G1126800 Malus domestica HOM05D005849 ORTHO05D004704 8.2e-08 61.2 126 35.7
AUR62029117 Chenopodium quinoa HOM05D005849 ORTHO05D004704 1.1e-07 60.8 118 33.9
Solyc07g045450.1 Solanum lycopersicum HOM05D005849 ORTHO05D004704 1.1e-07 60.8 89 44.9
Sopen07g023990 Solanum pennellii HOM05D005849 ORTHO05D004704 1.1e-07 60.8 89 44.9
Medtr5g098480 Medicago truncatula HOM05D005849 ORTHO05D004704 1.4e-07 60.5 123 35.0
Os12g0498900 Oryza sativa ssp. japonica HOM05D005849 ORTHO05D004704 1.4e-07 60.5 124 39.5
Sed0012118 Sechium edule HOM05D005849 ORTHO05D004704 1.4e-07 60.5 127 36.2
EL10Ac9g22679 Beta vulgaris HOM05D005849 ORTHO05D004704 1.8e-07 60.1 116 34.5
Glyma.20G062100 Glycine max HOM05D005849 ORTHO05D004704 2.4e-07 59.7 118 36.4
Cpa.g.sc136.30 Carica papaya HOM05D005849 ORTHO05D004704 4.1e-07 58.9 126 36.5
Dinv26604 Davidia involucrata HOM05D005849 ORTHO05D004704 4.1e-07 58.9 90 42.2
FAN05G2424 Fragaria x ananassa HOM05D005849 ORTHO05D004704 6.9e-07 58.2 94 40.4
Nn1g07503 Nelumbo nucifera HOM05D005849 ORTHO05D004704 6.9e-07 58.2 87 43.7
FvH4_6g40610 Fragaria vesca HOM05D005849 ORTHO05D004704 1.2e-06 57.4 94 40.4
FAN09G2506 Fragaria x ananassa HOM05D005849 ORTHO05D004704 1.2e-06 57.4 95 42.1
FAN14G3262 Fragaria x ananassa HOM05D005849 ORTHO05D004704 1.2e-06 57.4 94 40.4
MBI19_g14891_MAGBIO Magnolia biondii HOM05D005849 ORTHO05D004704 1.2e-06 57.4 82 40.2
Nn1g03187 Nelumbo nucifera HOM05D005849 ORTHO05D004704 1.2e-06 57.4 85 41.2
Gohir.A07G192100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 2.6e-06 56.2 114 38.6
Gorai.001G222200 Gossypium raimondii HOM05D005849 ORTHO05D004704 2.6e-06 56.2 114 38.6
TAR629G2911 Trochodendron aralioides HOM05D005849 ORTHO05D004704 4.5e-06 55.5 132 32.6
Aqoxy4G02338 Aquilegia oxysepala HOM05D005849 ORTHO05D004704 5.9e-06 55.1 125 36.0
MSTRG.12249 Avicennia marina HOM05D005849 ORTHO05D004704 5.9e-06 55.1 118 35.6
FAN02G2959 Fragaria x ananassa HOM05D005849 ORTHO05D004704 5.9e-06 55.1 94 39.4
Actinidia18832 Actinidia chinensis HOM05D005849 ORTHO05D004704 7.7e-06 54.7 115 35.7
Gohir.D07G198400 Gossypium hirsutum HOM05D005849 ORTHO05D004704 7.7e-06 54.7 114 37.7
Lalb_Chr10g0107651 Lupinus albus HOM05D005849 ORTHO05D004704 7.7e-06 54.7 75 48.0
Nitab4.5_0000006g0660 Nicotiana tabacum HOM05D005849 ORTHO05D004704 1.0e-05 54.3 88 43.2


User provided reference genes

Program Settings