Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p19570 Brassica napus HOM05D005125 ORTHO05D006777 3.0e-254 881.3 430 100.0
BraA09t37570Z Brassica rapa HOM05D005125 ORTHO05D006777 8.6e-254 879.8 430 99.5
BcaC04g22006 Brassica carinata HOM05D005125 ORTHO05D006777 2.1e-252 875.2 430 99.1
C09p24930 Brassica napus HOM05D005125 ORTHO05D006777 2.1e-252 875.2 430 99.1
BcaB07g31085 Brassica carinata HOM05D005125 ORTHO05D006777 5.1e-238 827.4 431 94.9
Sp7g08250 Schrenkiella parvula HOM05D005125 ORTHO05D006777 1.2e-218 763.1 431 88.2
AL8G19280 Arabidopsis lyrata HOM05D005125 ORTHO05D006777 4.9e-217 757.7 423 88.2
AT5G42320 Arabidopsis thaliana HOM05D005125 ORTHO05D006777 8.4e-217 756.9 431 86.1
Carub.0008s0686 Capsella rubella HOM05D005125 ORTHO05D006777 4.2e-216 754.6 419 88.5
CARHR284930 Cardamine hirsuta HOM05D005125 ORTHO05D006777 5.4e-216 754.2 431 85.8
Aa31LG9G12440 Aethionema arabicum HOM05D005125 ORTHO05D006777 2.9e-209 731.9 445 82.0
THA.LOC104813172 Tarenaya hassleriana HOM05D005125 ORTHO05D006777 6.7e-206 720.7 426 83.6
Cpa.g.sc26.198 Carica papaya HOM05D005125 ORTHO05D006777 2.6e-186 655.6 428 75.5
Potri.002G010800 Populus trichocarpa HOM05D005125 ORTHO05D006777 7.2e-184 647.5 408 75.5
Manes.05G134400 Manihot esculenta HOM05D005125 ORTHO05D006777 1.2e-183 646.7 417 74.8
Sabra05G0193900 Salix brachista HOM05D005125 ORTHO05D006777 1.2e-183 646.7 414 75.6
Potri.005G250300 Populus trichocarpa HOM05D005125 ORTHO05D006777 2.1e-183 646.0 417 74.3
TWI56G0714 Tripterygium wilfordii HOM05D005125 ORTHO05D006777 2.1e-183 646.0 403 76.9
GSVIVG01013360001 Vitis vinifera HOM05D005125 ORTHO05D006777 1.4e-182 643.3 403 75.7
Thecc.08G058900 Theobroma cacao HOM05D005125 ORTHO05D006777 1.1e-181 640.2 400 77.0
Gorai.002G117000 Gossypium raimondii HOM05D005125 ORTHO05D006777 7.4e-181 637.5 402 75.6
Duzib093G0577 Durio zibethinus HOM05D005125 ORTHO05D006777 9.7e-181 637.1 414 74.9
Gohir.A01G105600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.3e-180 636.7 402 75.6
Gohir.D01G091900 Gossypium hirsutum HOM05D005125 ORTHO05D006777 2.2e-180 636.0 402 75.4
CiPaw.07G138900 Carya illinoinensis HOM05D005125 ORTHO05D006777 8.2e-180 634.0 429 72.7
CiPaw.08G073000 Carya illinoinensis HOM05D005125 ORTHO05D006777 3.1e-179 632.1 427 73.1
Ciclev10003241m.g Citrus clementina HOM05D005125 ORTHO05D006777 4.1e-179 631.7 398 76.1
Duzib116G0840 Durio zibethinus HOM05D005125 ORTHO05D006777 2.0e-178 629.4 402 75.1
Manes.18G005400 Manihot esculenta HOM05D005125 ORTHO05D006777 2.6e-178 629.0 434 70.5
Thhalv10027780m.g Eutrema salsugineum HOM05D005125 ORTHO05D006777 1.7e-177 626.3 341 89.4
FAN27G2626 Fragaria x ananassa HOM05D005125 ORTHO05D006777 3.8e-177 625.2 434 70.0
QL02p014036 Quercus lobata HOM05D005125 ORTHO05D006777 3.8e-177 625.2 419 72.1
Cfa014076 Carpinus fangiana HOM05D005125 ORTHO05D006777 1.1e-176 623.6 417 72.9
Ca_15433_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 1.1e-176 623.6 417 71.9
Glyma.06G018200 Glycine max HOM05D005125 ORTHO05D006777 1.1e-176 623.6 415 73.0
FvH4_2g37450 Fragaria vesca HOM05D005125 ORTHO05D006777 1.4e-176 623.2 434 69.6
Prupe.1G354500 Prunus persica HOM05D005125 ORTHO05D006777 1.4e-176 623.2 433 70.9
Atru.chr13.135 Acer truncatum HOM05D005125 ORTHO05D006777 2.5e-176 622.5 421 71.7
MD15G1002000 Malus domestica HOM05D005125 ORTHO05D006777 1.2e-175 620.2 434 70.3
Lalb_Chr11g0061631 Lupinus albus HOM05D005125 ORTHO05D006777 2.1e-175 619.4 387 76.2
FAN20G1306 Fragaria x ananassa HOM05D005125 ORTHO05D006777 8.0e-175 617.5 434 69.4
RcHm_v2.0_Chr6g0304271 Rosa chinensis HOM05D005125 ORTHO05D006777 1.0e-174 617.1 424 70.3
Glyma.04G017900 Glycine max HOM05D005125 ORTHO05D006777 1.8e-174 616.3 409 74.1
Medtr3g115290 Medicago truncatula HOM05D005125 ORTHO05D006777 3.0e-174 615.5 418 71.3
Lalb_Chr23g0265791 Lupinus albus HOM05D005125 ORTHO05D006777 6.7e-174 614.4 402 73.1
FAN15G0126 Fragaria x ananassa HOM05D005125 ORTHO05D006777 2.0e-173 612.8 448 67.9
MD08G1002400 Malus domestica HOM05D005125 ORTHO05D006777 2.0e-173 612.8 435 69.2
Lj1g0005535 Lotus japonicus HOM05D005125 ORTHO05D006777 1.3e-172 610.1 387 74.9
Haze_22773 Corylus avellana HOM05D005125 ORTHO05D006777 3.7e-172 608.6 403 73.2
Dinv31939 Davidia involucrata HOM05D005125 ORTHO05D006777 3.7e-172 608.6 393 74.0
Eucgr.L00923 Eucalyptus grandis HOM05D005125 ORTHO05D006777 3.7e-172 608.6 435 68.0
Cc10_g00670 Coffea canephora HOM05D005125 ORTHO05D006777 4.8e-172 608.2 416 70.7
PGR083G1107 Punica granatum HOM05D005125 ORTHO05D006777 1.1e-171 607.1 399 72.7
CSS0022218 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 4.1e-171 605.1 420 70.2
Hma1.2p1_0507F.1_g168460 Hydrangea macrophylla HOM05D005125 ORTHO05D006777 3.5e-170 602.1 417 71.0
ClCG08G009440 Citrullus lanatus HOM05D005125 ORTHO05D006777 5.9e-170 601.3 408 71.6
TPR.G38202 Trifolium pratense HOM05D005125 ORTHO05D006777 1.0e-169 600.5 422 68.0
Actinidia37922 Actinidia chinensis HOM05D005125 ORTHO05D006777 2.2e-169 599.4 417 69.8
EL10Ac1g01960 Beta vulgaris HOM05D005125 ORTHO05D006777 6.5e-169 597.8 417 69.3
CANSAT25G1708 Cannabis sativa HOM05D005125 ORTHO05D006777 6.5e-169 597.8 418 69.4
Solyc04g082340.3 Solanum lycopersicum HOM05D005125 ORTHO05D006777 6.5e-169 597.8 416 69.2
Sopen04g035960 Solanum pennellii HOM05D005125 ORTHO05D006777 6.5e-169 597.8 416 69.2
Phvul.009G010800 Phaseolus vulgaris HOM05D005125 ORTHO05D006777 4.2e-168 595.1 417 70.0
Duzib041G0467 Durio zibethinus HOM05D005125 ORTHO05D006777 9.4e-168 594.0 396 72.5
Migut.C00961 Erythranthe guttata HOM05D005125 ORTHO05D006777 1.6e-167 593.2 393 71.0
Lj4A11T69 Lonicera japonica HOM05D005125 ORTHO05D006777 2.1e-167 592.8 392 72.7
PGSC0003DMG400009979 Solanum tuberosum HOM05D005125 ORTHO05D006777 3.6e-167 592.0 410 69.8
Rhsim06G0007400 Rhododendron simsii HOM05D005125 ORTHO05D006777 1.4e-166 590.1 418 68.9
arahy.Tifrunner.gnm1.ann1.1X7ZBM Arachis hypogaea HOM05D005125 ORTHO05D006777 4.0e-166 588.6 432 68.3
Peaxi162Scf00893g00037 Petunia axillaris HOM05D005125 ORTHO05D006777 2.0e-165 586.3 391 72.1
TAR625G0173 Trochodendron aralioides HOM05D005125 ORTHO05D006777 2.6e-165 585.9 417 68.6
Aqoxy6G01728 Aquilegia oxysepala HOM05D005125 ORTHO05D006777 4.4e-165 585.1 406 70.0
arahy.Tifrunner.gnm1.ann1.VXG7Z6 Arachis hypogaea HOM05D005125 ORTHO05D006777 4.4e-165 585.1 432 68.1
CsaV3_6G031580 Cucumis sativus L. HOM05D005125 ORTHO05D006777 2.8e-164 582.4 425 67.8
Nitab4.5_0000588g0110 Nicotiana tabacum HOM05D005125 ORTHO05D006777 2.8e-164 582.4 417 68.1
AUR62036871 Chenopodium quinoa HOM05D005125 ORTHO05D006777 1.1e-163 580.5 388 70.1
PSO541G3228 Papaver somniferum HOM05D005125 ORTHO05D006777 5.3e-163 578.2 412 69.7
PSO675G8084 Papaver somniferum HOM05D005125 ORTHO05D006777 2.0e-162 576.2 412 69.4
Lsat_1_v5_gn_2_5181 Lactuca sativa HOM05D005125 ORTHO05D006777 5.9e-162 574.7 425 65.9
HanXRQChr06g0183991 Helianthus annuus HOM05D005125 ORTHO05D006777 1.0e-161 573.9 401 68.3
Ah.00g000800 Amaranthus hybridus HOM05D005125 ORTHO05D006777 2.2e-161 572.8 432 65.3
EL10Ac7g16836 Beta vulgaris HOM05D005125 ORTHO05D006777 1.9e-160 569.7 414 67.6
CAN.G311.115 Capsicum annuum HOM05D005125 ORTHO05D006777 2.5e-160 569.3 381 72.2
ECA238G0848 Erigeron canadensis HOM05D005125 ORTHO05D006777 2.5e-160 569.3 385 70.6
SalBow7G1095 Salvia bowleyana HOM05D005125 ORTHO05D006777 2.1e-159 566.2 403 67.2
vmacro21811 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 4.7e-159 565.1 463 62.0
MD12G1003300 Malus domestica HOM05D005125 ORTHO05D006777 3.0e-158 562.4 482 60.8
Sed0024407 Sechium edule HOM05D005125 ORTHO05D006777 3.0e-158 562.4 409 67.2
SGA_v2.0_scaffold108G30863 Striga asiatica HOM05D005125 ORTHO05D006777 2.6e-157 559.3 450 63.3
Rhsim07G0254900 Rhododendron simsii HOM05D005125 ORTHO05D006777 1.8e-155 553.1 376 69.1
Actinidia28601 Actinidia chinensis HOM05D005125 ORTHO05D006777 1.2e-154 550.4 410 65.4
Lsat_1_v5_gn_8_26201 Lactuca sativa HOM05D005125 ORTHO05D006777 2.9e-153 545.8 427 61.1
Ca_15458_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 1.9e-152 543.1 340 75.6
Hund05112 Selenicereus undatus HOM05D005125 ORTHO05D006777 3.4e-149 532.3 380 68.2
vmacro04403 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 2.8e-148 529.3 410 62.9
Nn5g30942 Nelumbo nucifera HOM05D005125 ORTHO05D006777 4.5e-146 521.9 383 66.3
VMungo1309G1587 Vigna mungo HOM05D005125 ORTHO05D006777 1.3e-145 520.4 385 67.0
unitig_747.g21516 Utricularia gibba HOM05D005125 ORTHO05D006777 8.6e-145 517.7 428 58.9
Eucgr.E03516 Eucalyptus grandis HOM05D005125 ORTHO05D006777 1.6e-143 513.5 434 60.1
MBI08_g41521_MAGBIO Magnolia biondii HOM05D005125 ORTHO05D006777 8.3e-140 501.1 402 60.7
HPP92_007117 Vanilla planifolia HOM05D005125 ORTHO05D006777 1.7e-137 493.4 411 58.4
DCAR_016769 Daucus carota HOM05D005125 ORTHO05D006777 9.5e-136 487.6 388 61.6
MELO3C026539.2 Cucumis melo HOM05D005125 ORTHO05D006777 2.3e-134 483.0 339 69.3
Zm00001eb209310 Zea mays HOM05D005125 ORTHO05D006777 3.7e-132 475.7 419 57.3
Os02g0119300 Oryza sativa ssp. japonica HOM05D005125 ORTHO05D006777 1.1e-131 474.2 396 57.3
Gorai.009G188100 Gossypium raimondii HOM05D005125 ORTHO05D006777 1.2e-130 470.7 318 68.6
Gohir.D05G182800 Gossypium hirsutum HOM05D005125 ORTHO05D006777 3.0e-129 466.1 318 67.6
CDE05G1644 Ceratophyllum demersum HOM05D005125 ORTHO05D006777 5.1e-129 465.3 388 58.0
ATR0661G305 Amborella trichopoda HOM05D005125 ORTHO05D006777 6.6e-129 464.9 399 57.1
CSS0019336 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 1.9e-128 463.4 286 74.8
Gohir.A05G179600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 7.3e-128 461.5 318 67.0
Sc15g0004430 Simmondsia chinensis HOM05D005125 ORTHO05D006777 3.1e-126 456.1 299 71.9
SHI07997 Sapria himalayana HOM05D005125 ORTHO05D006777 9.9e-125 451.1 449 53.7
COL.COLO4_06662 Corchorus olitorius HOM05D005125 ORTHO05D006777 1.3e-121 440.7 279 75.3
BcaNung05255 Brassica carinata HOM05D005125 ORTHO05D006777 8.9e-118 427.9 236 90.3
Psat5g159120 Pisum sativum HOM05D005125 ORTHO05D006777 1.4e-110 404.1 251 75.7
Dinv05534 Davidia involucrata HOM05D005125 ORTHO05D006777 4.9e-108 395.6 253 73.5
AagrBONN_evm.TU.Sc2ySwM_362.2863 Anthoceros agrestis HOM05D005125 ORTHO05D006777 2.4e-102 376.7 328 55.8
Mapoly0045s0063 Marchantia polymorpha HOM05D005125 ORTHO05D006777 2.0e-101 373.6 310 55.8
BcaNung05254 Brassica carinata HOM05D005125 ORTHO05D006777 9.6e-96 354.8 178 96.1
Pp3c20_16570 Physcomitrium patens HOM05D005125 ORTHO05D006777 4.0e-94 349.4 403 45.4
BolC9t55384H Brassica oleracea HOM05D005125 ORTHO05D006777 4.2e-91 339.3 172 98.8
ECA238G3411 Erigeron canadensis HOM05D005125 ORTHO05D006777 1.3e-89 334.3 204 73.5
SMO358G0159 Selaginella moellendorffii HOM05D005125 ORTHO05D006777 2.3e-89 333.6 279 57.3
Cre11.g467631 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D006777 6.1e-74 282.3 320 43.1
SGA_v2.0_scaffold195G40773 Striga asiatica HOM05D005125 ORTHO05D006777 1.1e-70 271.6 191 64.4
MD00G1076900 Malus domestica HOM05D005125 ORTHO05D006777 1.3e-68 264.6 227 57.7
SEGI_03459 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 7.9e-66 255.4 209 56.9
PRCOL_00006814 Prasinoderma coloniale HOM05D005125 ORTHO05D006777 1.4e-65 254.6 248 49.6
Oeu056206.2 Olea europaea HOM05D005125 ORTHO05D006777 1.1e-54 218.4 155 70.3
ECA233G3085 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.7e-42 177.2 115 66.1
SEGI_37631 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 4.9e-39 166.4 123 55.3
MCO16G405 Micromonas commoda HOM05D005125 ORTHO05D006777 1.0e-36 158.7 140 49.3
SGA_v2.0_scaffold83G26467 Striga asiatica HOM05D005125 ORTHO05D006777 2.5e-35 154.1 152 57.2
ECA238G2450 Erigeron canadensis HOM05D000240 ORTHO05D002721 3.4e-32 143.7 176 44.3
Cc00_g07920 Coffea canephora HOM05D005125 ORTHO05D006777 9.2e-30 135.6 158 51.3
PRCOL_00005708 Prasinoderma coloniale HOM05D005125 ORTHO05D034490 1.6e-29 134.8 413 26.2
Sc15g0004440 Simmondsia chinensis HOM05D005125 ORTHO05D006777 7.8e-29 132.5 110 58.2
Cre16.g668950 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D034490 1.8e-25 121.3 294 29.9
Oeu035185.1 Olea europaea HOM05D005125 ORTHO05D006777 3.5e-21 107.1 80 63.8
Lsat_1_v5_gn_1_87521 Lactuca sativa HOM05D005125 ORTHO05D007904 1.7e-20 104.8 63 71.4
Cc10_g14360 Coffea canephora HOM05D005125 ORTHO05D006777 1.7e-15 88.2 58 69.0
TPR.G33884 Trifolium pratense HOM05D005125 ORTHO05D006777 1.6e-13 81.6 51 70.6
C04p25390 Brassica napus HOM05D005125 ORTHO05D041222 1.9e-11 74.7 81 53.1
BolC4t24047H Brassica oleracea HOM05D005125 ORTHO05D041222 1.9e-11 74.7 81 53.1
ECA233G5321 Erigeron canadensis HOM05D000003 ORTHO05D000004 8.1e-10 69.3 54 59.3


User provided reference genes

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