Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p15560 Brassica napus HOM05D008497 ORTHO05D003355 0.0e+00 1737.2 967 100.0
BraA09t37196Z Brassica rapa HOM05D008497 ORTHO05D003355 0.0e+00 1699.1 977 97.5
BolC9t54783H Brassica oleracea HOM05D008497 ORTHO05D003355 0.0e+00 1528.1 981 89.3
C09p18810 Brassica napus HOM05D008497 ORTHO05D003355 0.0e+00 1526.5 971 89.9
BcaC04g22481 Brassica carinata HOM05D008497 ORTHO05D003355 0.0e+00 1521.9 981 89.2
BcaB07g31396 Brassica carinata HOM05D008497 ORTHO05D003355 0.0e+00 1179.9 977 74.3
Sp2g01280 Schrenkiella parvula HOM05D008497 ORTHO05D027096 2.5e-237 826.2 994 55.7
Thhalv10023229m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 8.3e-172 608.6 1126 46.3
BraA01t02635Z Brassica rapa HOM05D008497 ORTHO05D003355 1.4e-147 528.1 981 43.6
BcaC06g36075 Brassica carinata HOM05D008497 ORTHO05D003355 1.7e-132 478.0 992 42.2
C07p08170 Brassica napus HOM05D008497 ORTHO05D003355 8.4e-132 475.7 989 42.1
BolC7t41233H Brassica oleracea HOM05D008497 ORTHO05D003355 8.4e-132 475.7 989 42.1
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 1.9e-115 421.4 1171 37.5
AL7G45710 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 3.5e-114 417.2 1153 36.4
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.8e-97 361.7 1109 35.0
CARHR215860 Cardamine hirsuta HOM05D008497 ORTHO05D003355 6.1e-82 310.1 1039 34.5
AT5G37190 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.0e-65 256.1 1052 30.4
A07p05110 Brassica napus HOM05D008497 ORTHO05D003355 3.4e-40 171.4 594 33.8
Aa31LG7G9560 Aethionema arabicum HOM05D008497 ORTHO05D003355 2.2e-31 142.1 1027 26.0
BolC4t24461H Brassica oleracea HOM05D008497 ORTHO05D003355 1.1e-30 139.8 164 48.8
BcaC02g10405 Brassica carinata HOM05D008497 ORTHO05D003355 2.3e-28 132.1 164 45.7
C04p29310 Brassica napus HOM05D008497 ORTHO05D003355 2.3e-28 132.1 164 45.7
THA.LOC104807749 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 3.9e-28 131.3 1217 24.7
BcaC04g22710 Brassica carinata HOM05D008497 ORTHO05D027096 3.4e-24 118.2 115 63.5
BolC9t54519H Brassica oleracea HOM05D008497 ORTHO05D027096 3.4e-24 118.2 115 63.5
Sp7g05260 Schrenkiella parvula HOM05D008497 ORTHO05D003355 1.7e-23 115.9 359 33.7
AL1G64360 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 1.5e-19 102.8 197 36.0
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 5.6e-19 100.9 99 48.5
BcaC06g31928 Brassica carinata HOM05D008497 ORTHO05D003355 1.8e-17 95.9 107 54.2
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 3.1e-17 95.1 121 40.5
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 5.8e-16 90.9 123 42.3
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 9.9e-16 90.1 92 48.9
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 9.9e-16 90.1 114 42.1
Sp7g04810 Schrenkiella parvula HOM05D008497 ORTHO05D003355 1.3e-15 89.7 176 35.8
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 2.2e-15 89.0 100 43.0
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 2.9e-15 88.6 101 44.6
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 2.9e-15 88.6 94 45.7
Peaxi162Scf00128g00645 Petunia axillaris HOM05D012928 ORTHO05D003355 6.4e-15 87.4 331 29.0
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 6.4e-15 87.4 90 47.8
Gorai.005G174200 Gossypium raimondii HOM05D005863 ORTHO05D003355 8.4e-15 87.0 89 48.3
AT2G01800 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.4e-14 86.3 118 41.5
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 1.4e-14 86.3 89 47.2
Glyma.11G245500 Glycine max HOM05D013281 ORTHO05D003355 1.4e-14 86.3 98 42.9
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 1.9e-14 85.9 99 43.4
Glyma.18G011700 Glycine max HOM05D013281 ORTHO05D003355 2.4e-14 85.5 96 42.7
Gohir.A03G131400 Gossypium hirsutum HOM05D005863 ORTHO05D003355 2.4e-14 85.5 89 47.2
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 3.2e-14 85.1 99 45.5
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 5.5e-14 84.3 171 31.0
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 5.5e-14 84.3 93 45.2
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 7.1e-14 84.0 100 42.0
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 7.1e-14 84.0 99 45.5
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 1.2e-13 83.2 98 40.8
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 1.6e-13 82.8 99 42.4
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 2.7e-13 82.0 247 31.6
AT4G00920 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 3.5e-13 81.6 165 35.8
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 4.6e-13 81.3 99 40.4
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 6.0e-13 80.9 99 41.4
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 6.0e-13 80.9 89 44.9
PGR102G1092 Punica granatum HOM05D005863 ORTHO05D003355 6.0e-13 80.9 92 46.7
Sc14g0008880 Simmondsia chinensis HOM05D005863 ORTHO05D003355 1.3e-12 79.7 92 43.5
Potri.010G052200 Populus trichocarpa HOM05D005863 ORTHO05D003355 2.3e-12 79.0 197 31.5
AL1G63810 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 3.0e-12 78.6 244 32.8
Carub.0001s4470 Capsella rubella HOM05D008497 ORTHO05D003355 3.0e-12 78.6 147 37.4
AT2G02770 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 3.9e-12 78.2 301 28.6
HanXRQChr01g0023571 Helianthus annuus HOM05D005863 ORTHO05D003355 3.9e-12 78.2 288 29.2
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 5.1e-12 77.8 89 44.9
Carub.0003s3440 Capsella rubella HOM05D008497 ORTHO05D003355 6.7e-12 77.4 91 45.1
Thhalv10028078m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 6.7e-12 77.4 168 35.1
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 8.7e-12 77.0 91 40.7
Phvul.001G257200 Phaseolus vulgaris HOM05D013281 ORTHO05D003355 8.7e-12 77.0 94 41.5
SGA_v2.0_scaffold124G33641 Striga asiatica HOM05D005863 ORTHO05D003355 1.9e-11 75.9 240 29.2
Ciclev10008896m.g Citrus clementina HOM05D005863 ORTHO05D003355 2.5e-11 75.5 128 37.5
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 2.5e-11 75.5 430 25.6
AUR62024201 Chenopodium quinoa HOM05D025851 ORTHO05D044019 3.3e-11 75.1 84 42.9
Lj4g0027725 Lotus japonicus HOM05D013281 ORTHO05D003355 3.3e-11 75.1 88 39.8
TPR.G14234 Trifolium pratense HOM05D013281 ORTHO05D003355 3.3e-11 75.1 100 37.0
VMungo1383G2020 Vigna mungo HOM05D013281 ORTHO05D003355 3.3e-11 75.1 90 41.1
Sabra07G0084200 Salix brachista HOM05D005863 ORTHO05D003355 4.3e-11 74.7 97 42.3
EL10As2g23204 Beta vulgaris HOM05D025851 ORTHO05D003355 1.3e-10 73.2 93 38.7
C09p16040 Brassica napus HOM05D008497 ORTHO05D027096 1.3e-10 73.2 69 60.9
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 1.6e-10 72.8 98 42.9
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 2.1e-10 72.4 88 44.3
Aa31sc26G130 Aethionema arabicum HOM05D008497 ORTHO05D003355 2.8e-10 72.0 106 36.8
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 2.8e-10 72.0 541 25.1
Sp7g04860 Schrenkiella parvula HOM05D008497 ORTHO05D003355 2.8e-10 72.0 287 29.3
AT4G00580 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 3.7e-10 71.6 282 28.7
THA.LOC104822728 Tarenaya hassleriana HOM05D012516 ORTHO05D003355 1.4e-09 69.7 128 32.0
Thecc.07G012300 Theobroma cacao HOM05D005863 ORTHO05D003355 1.8e-09 69.3 144 32.6
Cpa.g.sc12.119 Carica papaya HOM05D005863 ORTHO05D003355 2.4e-09 68.9 87 41.4
MD13G1106900 Malus domestica HOM05D005863 ORTHO05D017031 2.4e-09 68.9 88 47.7
GSVIVG01014696001 Vitis vinifera HOM05D005863 ORTHO05D003355 2.4e-09 68.9 89 40.4
Migut.A01086 Erythranthe guttata HOM05D005863 ORTHO05D003355 3.1e-09 68.6 164 29.9
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 3.1e-09 68.6 88 39.8
THA.LOC104825538 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 4.0e-09 68.2 109 37.6
Migut.K00651 Erythranthe guttata HOM05D005863 ORTHO05D003355 5.3e-09 67.8 440 25.0
Gohir.A13G132200 Gossypium hirsutum HOM05D005863 ORTHO05D003355 5.3e-09 67.8 155 34.2
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 6.9e-09 67.4 539 22.3
TAR629G0397 Trochodendron aralioides HOM05D005863 ORTHO05D003355 6.9e-09 67.4 156 32.1
arahy.Tifrunner.gnm1.ann1.R3FSDD Arachis hypogaea HOM05D015529 ORTHO05D015409 9.0e-09 67.0 134 30.6
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 9.0e-09 67.0 338 25.7
RcHm_v2.0_Chr3g0496661 Rosa chinensis HOM05D014719 ORTHO05D003355 1.2e-08 66.6 90 44.4
Thhalv10028182m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 1.5e-08 66.2 77 44.2
QL08p003943 Quercus lobata HOM05D014719 ORTHO05D003355 1.5e-08 66.2 88 38.6
Atru.chr2.3697 Acer truncatum HOM05D005863 ORTHO05D003355 2.6e-08 65.5 172 29.1
Thhalv10027990m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 2.6e-08 65.5 112 34.8
Lsat_1_v5_gn_7_114301 Lactuca sativa HOM05D005863 ORTHO05D003355 2.6e-08 65.5 88 37.5
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 2.6e-08 65.5 461 22.6
Actinidia37152 Actinidia chinensis HOM05D005863 ORTHO05D003355 3.4e-08 65.1 120 35.8
Gohir.D13G135600 Gossypium hirsutum HOM05D005863 ORTHO05D003355 3.4e-08 65.1 159 34.0
Gorai.013G152000 Gossypium raimondii HOM05D005863 ORTHO05D003355 3.4e-08 65.1 159 34.0
Nitab4.5_0001159g0240 Nicotiana tabacum HOM05D005863 ORTHO05D003355 3.4e-08 65.1 75 44.0
THA.LOC104808433 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 3.4e-08 65.1 77 42.9
THA.LOC104825537 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 3.4e-08 65.1 77 42.9
vmacro09646 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 4.5e-08 64.7 101 36.6
Lsat_1_v5_gn_8_150460 Lactuca sativa HOM05D005863 ORTHO05D003355 7.6e-08 63.9 374 25.9
ATR0824G200 Amborella trichopoda HOM05D005863 ORTHO05D003355 1.0e-07 63.5 542 22.5
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 1.3e-07 63.2 202 27.7
PSO384G2180 Papaver somniferum HOM05D005863 ORTHO05D003355 1.3e-07 63.2 166 28.3
CSS0034444 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 3.8e-07 61.6 88 39.8
Rhsim04G0012300 Rhododendron simsii HOM05D005863 ORTHO05D003355 3.8e-07 61.6 122 30.3
CANSAT01G3281 Cannabis sativa HOM05D005863 ORTHO05D003355 6.5e-07 60.8 362 24.9
SalBow6G1550 Salvia bowleyana HOM05D005863 ORTHO05D003355 6.5e-07 60.8 93 38.7
Sc16g0008130 Simmondsia chinensis HOM05D005863 ORTHO05D003355 6.5e-07 60.8 73 39.7
CANSAT78G1634 Cannabis sativa HOM05D005863 ORTHO05D003355 8.4e-07 60.5 91 38.5
Ah.02g130420 Amaranthus hybridus HOM05D025851 ORTHO05D003355 1.4e-06 59.7 84 34.5
SalBow8G3261 Salvia bowleyana HOM05D005863 ORTHO05D003355 1.4e-06 59.7 93 38.7
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 2.5e-06 58.9 527 23.0
Hma1.2p1_2829F.1_g329210 Hydrangea macrophylla HOM05D005863 ORTHO05D003355 2.5e-06 58.9 140 31.4
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 4.2e-06 58.2 820 21.6
PSO017G4976 Papaver somniferum HOM05D040514 ORTHO05D003355 5.5e-06 57.8 555 22.9
PSO339G2613 Papaver somniferum HOM05D005863 ORTHO05D003355 5.5e-06 57.8 88 34.1
Prupe.8G267500 Prunus persica HOM05D014719 ORTHO05D003355 5.5e-06 57.8 88 39.8
arahy.Tifrunner.gnm1.ann1.5I91Y5 Arachis hypogaea HOM05D015529 ORTHO05D015409 7.1e-06 57.4 161 25.5
FvH4_1g28370 Fragaria vesca HOM05D014719 ORTHO05D003355 9.3e-06 57.0 120 35.8
SGA_v2.0_scaffold171G38860 Striga asiatica HOM05D005863 ORTHO05D003355 9.3e-06 57.0 86 37.2


User provided reference genes

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