Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 2.1e-27 125.2 72 100.0
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 1.0e-26 122.9 71 98.6
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 1.9e-25 118.6 74 93.2
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 2.5e-25 118.2 74 91.9
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 2.5e-25 118.2 74 91.9
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 2.5e-25 118.2 74 91.9
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 2.5e-25 118.2 74 91.9
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 2.5e-25 118.2 74 91.9
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 5.7e-25 117.1 71 83.1
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 1.3e-24 115.9 71 83.1
CARHR046710 Cardamine hirsuta HOM05D004803 ORTHO05D005653 4.2e-20 100.9 75 82.7
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 9.3e-20 99.8 72 66.7
BcaB07g31446 Brassica carinata HOM05D004803 ORTHO05D005653 1.2e-19 99.4 75 78.7
Thhalv10023788m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 1.2e-19 99.4 76 80.3
BcaB07g31518 Brassica carinata HOM05D004803 ORTHO05D005653 7.9e-19 96.7 74 81.1
AT1G64220 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 1.0e-18 96.3 78 76.9
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.3e-18 95.9 79 60.8
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 2.3e-18 95.1 64 68.8
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 2.3e-18 95.1 64 68.8
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 2.3e-18 95.1 64 68.8
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 2.3e-18 95.1 64 68.8
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 2.3e-18 95.1 64 68.8
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 2.3e-18 95.1 64 68.8
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 2.3e-18 95.1 64 68.8
AL2G10780 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 3.9e-18 94.4 84 72.6
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 3.9e-18 94.4 78 71.8
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 6.7e-18 93.6 67 70.1
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 6.7e-18 93.6 67 70.1
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 1.1e-17 92.8 75 61.3
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 2.5e-17 91.7 75 61.3
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 2.5e-17 91.7 49 83.7
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 3.3e-17 91.3 67 68.7
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 3.3e-17 91.3 78 65.4
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 4.3e-17 90.9 64 64.1
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 4.3e-17 90.9 75 61.3
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 7.4e-17 90.1 75 61.3
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 7.4e-17 90.1 49 81.6
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 9.7e-17 89.7 76 68.4
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 1.3e-16 89.4 76 60.5
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 1.3e-16 89.4 75 60.0
Sp7g00380 Schrenkiella parvula HOM05D004803 ORTHO05D005653 1.4e-15 85.9 49 77.6
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.8e-15 85.5 70 60.0
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 5.3e-15 84.0 74 58.1
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 5.3e-15 84.0 74 58.1
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 5.3e-15 84.0 74 58.1
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 6.9e-15 83.6 73 63.0
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 9.0e-15 83.2 72 51.4
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 9.0e-15 83.2 74 56.8
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 2.0e-14 82.0 74 55.4
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 2.0e-14 82.0 74 64.9
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 2.0e-14 82.0 73 64.4
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 2.0e-14 82.0 74 56.8
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 2.0e-14 82.0 75 54.7
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 2.0e-14 82.0 75 53.3
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 2.6e-14 81.6 73 54.8
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 2.6e-14 81.6 73 53.4
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 2.6e-14 81.6 73 53.4
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 2.6e-14 81.6 73 53.4
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 2.6e-14 81.6 73 53.4
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 2.6e-14 81.6 75 53.3
CARHR231140 Cardamine hirsuta HOM05D004803 ORTHO05D005653 3.4e-14 81.3 72 54.2
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 4.5e-14 80.9 73 52.1
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 4.5e-14 80.9 74 55.4
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 4.5e-14 80.9 74 54.1
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 5.9e-14 80.5 75 52.0
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 7.7e-14 80.1 73 53.4
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 7.7e-14 80.1 75 52.0
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 7.7e-14 80.1 74 54.1
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 7.7e-14 80.1 46 67.4
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 1.3e-13 79.3 73 52.1
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 1.3e-13 79.3 73 54.8
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 1.7e-13 79.0 73 53.4
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 1.7e-13 79.0 73 54.8
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 1.7e-13 79.0 74 54.1
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 1.7e-13 79.0 74 54.1
Aa31LG6G6980 Aethionema arabicum HOM05D004803 ORTHO05D005653 2.9e-13 78.2 47 70.2
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 2.9e-13 78.2 73 53.4
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 2.9e-13 78.2 73 52.1
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 3.8e-13 77.8 73 53.4
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 3.8e-13 77.8 71 50.7
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 5.0e-13 77.4 73 50.7
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 5.0e-13 77.4 73 53.4
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 5.0e-13 77.4 73 53.4
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 6.5e-13 77.0 79 53.2
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 6.5e-13 77.0 79 53.2
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 8.5e-13 76.6 75 54.7
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 1.4e-12 75.9 75 52.0
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 1.4e-12 75.9 70 51.4
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 1.4e-12 75.9 73 49.3
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 1.4e-12 75.9 74 51.4
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 1.9e-12 75.5 73 49.3
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 1.9e-12 75.5 79 51.9
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 2.5e-12 75.1 73 49.3
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 2.5e-12 75.1 73 49.3
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 2.5e-12 75.1 74 51.4
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 2.5e-12 75.1 80 56.2
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 3.2e-12 74.7 72 52.8
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 3.2e-12 74.7 80 46.2
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 4.2e-12 74.3 64 57.8
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 5.5e-12 73.9 73 50.7
Sp7g21690 Schrenkiella parvula HOM05D004803 ORTHO05D005653 7.2e-12 73.6 47 63.8
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 7.2e-12 73.6 73 50.7
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 9.4e-12 73.2 70 52.9
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 1.2e-11 72.8 72 52.8
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 1.2e-11 72.8 73 50.7
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 1.2e-11 72.8 73 50.7
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 1.6e-11 72.4 62 58.1
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 1.6e-11 72.4 47 66.0
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 2.1e-11 72.0 44 70.5
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 2.7e-11 71.6 69 53.6
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 4.6e-11 70.9 44 65.9
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 4.6e-11 70.9 44 68.2
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 4.6e-11 70.9 80 48.8
Ah.08g217890 Amaranthus hybridus HOM05D004803 ORTHO05D005653 7.9e-11 70.1 65 52.3
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 7.9e-11 70.1 62 56.5
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 7.9e-11 70.1 80 56.2
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 7.9e-11 70.1 42 66.7
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 7.9e-11 70.1 78 50.0
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 7.9e-11 70.1 78 50.0
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 1.0e-10 69.7 44 63.6
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 1.4e-10 69.3 44 70.5
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 1.4e-10 69.3 78 48.7
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 1.4e-10 69.3 78 48.7
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 1.8e-10 68.9 78 48.7
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.8e-10 68.9 78 48.7
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.8e-10 68.9 78 48.7
Pp3c17_18760 Physcomitrium patens HOM05D004803 ORTHO05D005653 1.8e-10 68.9 47 63.8
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 2.3e-10 68.6 78 47.4
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 3.0e-10 68.2 73 49.3
Cc00_g00470 Coffea canephora HOM05D004803 ORTHO05D005653 3.0e-10 68.2 47 61.7
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 3.0e-10 68.2 44 68.2
Pp3c14_20040 Physcomitrium patens HOM05D004803 ORTHO05D005653 5.1e-10 67.4 47 61.7
Mapoly0024s0138 Marchantia polymorpha HOM05D004803 ORTHO05D005653 6.7e-10 67.0 48 62.5
Os01g0732000 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.1e-09 66.2 43 60.5
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 1.5e-09 65.9 71 49.3
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.5e-09 65.9 44 65.9
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 2.0e-09 65.5 61 49.2
SMO167G0035 Selaginella moellendorffii HOM05D004803 ORTHO05D005653 2.0e-09 65.5 46 56.5
Eucgr.H00014 Eucalyptus grandis HOM05D004803 ORTHO05D005653 4.3e-09 64.3 45 53.3
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 7.4e-09 63.5 44 59.1
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 9.7e-09 63.2 47 55.3
Sed0005262 Sechium edule HOM05D004803 ORTHO05D005653 9.7e-09 63.2 57 52.6
Os05g0583400 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.7e-08 62.4 44 56.8
CBR_g29719 Chara braunii HOM05D004803 ORTHO05D005653 6.3e-08 60.5 42 54.8
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 8.2e-08 60.1 70 42.9
Lj4g0006469 Lotus japonicus HOM05D004803 ORTHO05D005653 1.4e-07 59.3 59 47.5
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 1.8e-07 58.9 60 50.0
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 2.4e-07 58.5 62 48.4
Lalb_Chr09g0331931 Lupinus albus HOM05D004803 ORTHO05D005653 3.4e-06 54.7 55 47.3


User provided reference genes

Program Settings