Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p14790 Brassica napus HOM05D002129 ORTHO05D002188 3.1e-194 682.2 504 100.0
C09p17910 Brassica napus HOM05D002129 ORTHO05D002188 2.4e-183 646.0 504 94.6
BcaC04g22559 Brassica carinata HOM05D002129 ORTHO05D002188 1.1e-180 637.1 504 93.8
BolC9t54688H Brassica oleracea HOM05D002129 ORTHO05D002188 1.6e-174 616.7 504 92.3
AL2G10610 Arabidopsis lyrata HOM05D002129 ORTHO05D002188 6.7e-141 505.0 554 73.3
Thhalv10023387m.g Eutrema salsugineum HOM05D002129 ORTHO05D002188 2.9e-128 463.0 571 71.5
CARHR046630 Cardamine hirsuta HOM05D002129 ORTHO05D002188 7.2e-127 458.4 519 72.4
BcaB07g31455 Brassica carinata HOM05D002129 ORTHO05D002188 4.7e-118 429.1 548 72.6
Sp2g00430 Schrenkiella parvula HOM05D002129 ORTHO05D002188 4.7e-110 402.5 572 67.1
AT1G64330 Arabidopsis thaliana HOM05D002129 ORTHO05D002188 8.6e-104 381.7 556 64.4
Carub.0002s0048 Capsella rubella HOM05D002129 ORTHO05D002188 8.6e-104 381.7 582 61.7
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 1.4e-61 241.5 513 50.5
Sp7g00300 Schrenkiella parvula HOM05D002129 ORTHO05D002188 1.4e-50 204.9 233 60.5
BcaC02g08917 Brassica carinata HOM05D002129 ORTHO05D002188 2.1e-49 201.1 229 55.9
C04p49150 Brassica napus HOM05D002129 ORTHO05D002188 2.1e-49 201.1 229 55.9
BolC4t26499H Brassica oleracea HOM05D002129 ORTHO05D002188 6.1e-49 199.5 251 53.4
Carub.0007s3359 Capsella rubella HOM05D002129 ORTHO05D002188 2.3e-48 197.6 284 53.9
BcaB06g27672 Brassica carinata HOM05D002129 ORTHO05D002188 8.8e-48 195.7 230 59.1
BraA04t17139Z Brassica rapa HOM05D002129 ORTHO05D002188 1.9e-47 194.5 269 52.0
A04p14960 Brassica napus HOM05D002129 ORTHO05D002188 3.7e-46 190.3 231 58.0
Carub.0007s3367 Capsella rubella HOM05D002129 ORTHO05D021914 6.3e-46 189.5 284 50.7
AT5G41790 Arabidopsis thaliana HOM05D002129 ORTHO05D002188 1.4e-45 188.3 277 52.7
THA.LOC104809341 Tarenaya hassleriana HOM05D002129 ORTHO05D002188 1.1e-42 178.7 185 66.5
AL7G47470 Arabidopsis lyrata HOM05D002129 ORTHO05D002188 9.4e-42 175.6 277 52.0
CARHR212780 Cardamine hirsuta HOM05D002129 ORTHO05D002188 1.5e-39 168.3 188 65.4
Aa31LG9G340 Aethionema arabicum HOM05D002129 ORTHO05D002188 9.7e-39 165.6 222 55.0
Thhalv10027620m.g Eutrema salsugineum HOM05D002129 ORTHO05D002188 2.6e-36 157.5 306 48.4
BolC6t37203H Brassica oleracea HOM05D002129 ORTHO05D002188 7.7e-36 156.0 310 48.1
A07p20930 Brassica napus HOM05D002129 ORTHO05D002188 1.3e-35 155.2 162 52.5
Gohir.A02G102200 Gossypium hirsutum HOM05D002129 ORTHO05D002188 4.2e-34 150.2 263 39.9
BcaC08g44556 Brassica carinata HOM05D002129 ORTHO05D002188 5.5e-34 149.8 310 47.4
C06p20190 Brassica napus HOM05D001971 ORTHO05D002188 5.5e-34 149.8 310 47.4
Gorai.003G081700 Gossypium raimondii HOM05D002129 ORTHO05D002188 4.7e-33 146.7 253 40.7
Gohir.D03G081900 Gossypium hirsutum HOM05D002129 ORTHO05D002188 6.1e-33 146.4 217 44.7
Potri.001G094200 Populus trichocarpa HOM05D002129 ORTHO05D002188 1.4e-32 145.2 251 47.0
Potri.003G137400 Populus trichocarpa HOM05D002129 ORTHO05D002188 2.0e-31 141.4 223 44.8
COL.COLO4_21718 Corchorus olitorius HOM05D002129 ORTHO05D002188 4.4e-31 140.2 226 44.2
Thecc.03G293200 Theobroma cacao HOM05D002129 ORTHO05D002188 5.7e-31 139.8 226 43.8
Duzib205G0555 Durio zibethinus HOM05D002129 ORTHO05D002188 1.3e-30 138.7 261 40.2
Manes.01G045900 Manihot esculenta HOM05D002129 ORTHO05D002188 4.8e-30 136.7 279 41.2
arahy.Tifrunner.gnm1.ann1.DN0YA4 Arachis hypogaea HOM05D002129 ORTHO05D002188 1.4e-29 135.2 297 37.0
Manes.10G064266 Manihot esculenta HOM05D002129 ORTHO05D002188 2.4e-29 134.4 257 42.8
Gohir.D09G185400 Gossypium hirsutum HOM05D002129 ORTHO05D002188 1.6e-28 131.7 222 43.2
Duzib068G1418 Durio zibethinus HOM05D002129 ORTHO05D002188 3.5e-28 130.6 270 38.1
arahy.Tifrunner.gnm1.ann1.Q3GPI2 Arachis hypogaea HOM05D002129 ORTHO05D002188 5.9e-28 129.8 288 36.5
MD14G1121500 Malus domestica HOM05D002129 ORTHO05D002188 1.3e-27 128.6 217 42.9
Ciclev10018618m.g Citrus clementina HOM05D002129 ORTHO05D002188 5.0e-27 126.7 269 39.4
TWI60G1278 Tripterygium wilfordii HOM05D002129 ORTHO05D002188 6.5e-27 126.3 224 41.1
Gohir.A09G190800 Gossypium hirsutum HOM05D002129 ORTHO05D002188 1.1e-26 125.6 219 41.6
Gorai.006G207900 Gossypium raimondii HOM05D002129 ORTHO05D002188 1.1e-26 125.6 218 42.2
Sabra03G0098900 Salix brachista HOM05D002129 ORTHO05D002188 1.5e-26 125.2 240 37.1
Solyc08g082010.3 Solanum lycopersicum HOM05D002129 ORTHO05D002188 1.5e-26 125.2 241 40.2
Actinidia27335 Actinidia chinensis HOM05D002129 ORTHO05D002188 2.5e-26 124.4 296 38.9
Ca_17495_v3 Cicer arietinum L. HOM05D002129 ORTHO05D002188 9.4e-26 122.5 264 39.0
CSS0045654 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 2.1e-25 121.3 167 43.7
C07p01920 Brassica napus HOM05D002129 ORTHO05D002188 3.6e-25 120.6 162 50.6
Cc08_g15780 Coffea canephora HOM05D002129 ORTHO05D002188 4.7e-25 120.2 214 41.1
Oeu009945.1 Olea europaea HOM05D002129 ORTHO05D002188 1.4e-24 118.6 298 36.9
TPR.G3412 Trifolium pratense HOM05D002129 ORTHO05D002188 4.0e-24 117.1 215 42.8
Dinv37550 Davidia involucrata HOM05D002129 ORTHO05D002188 5.2e-24 116.7 193 44.6
Sopen08g030310 Solanum pennellii HOM05D002129 ORTHO05D002188 5.2e-24 116.7 221 42.5
Medtr8g099275 Medicago truncatula HOM05D002129 ORTHO05D002188 8.8e-24 115.9 266 36.1
Sabra01G0070100 Salix brachista HOM05D002129 ORTHO05D002188 8.8e-24 115.9 217 44.7
FAN18G3989 Fragaria x ananassa HOM05D002129 ORTHO05D002188 1.2e-23 115.5 193 42.5
RcHm_v2.0_Chr7g0195431 Rosa chinensis HOM05D002129 ORTHO05D002188 1.2e-23 115.5 199 42.2
FvH4_5g04072 Fragaria vesca HOM05D002129 ORTHO05D002188 4.4e-23 113.6 193 42.0
Manes.02G012600 Manihot esculenta HOM05D002129 ORTHO05D002188 5.7e-23 113.2 193 42.5
Cfa012842 Carpinus fangiana HOM05D002129 ORTHO05D002188 7.5e-23 112.8 188 39.9
Haze_08667 Corylus avellana HOM05D002129 ORTHO05D002188 1.3e-22 112.1 183 41.0
Lalb_Chr05g0224241 Lupinus albus HOM05D002129 ORTHO05D002188 1.3e-22 112.1 202 38.1
TAR374G0929 Trochodendron aralioides HOM05D002129 ORTHO05D002188 1.3e-22 112.1 236 37.7
Eucgr.E00844 Eucalyptus grandis HOM05D002129 ORTHO05D002188 1.7e-22 111.7 262 37.8
Phvul.002G296300 Phaseolus vulgaris HOM05D002129 ORTHO05D002188 2.2e-22 111.3 226 40.7
Nitab4.5_0000223g0210 Nicotiana tabacum HOM05D002129 ORTHO05D002188 6.3e-22 109.8 237 38.4
Lsat_1_v5_gn_6_12040 Lactuca sativa HOM05D002129 ORTHO05D002188 8.2e-22 109.4 219 40.6
Atru.chr9.2042 Acer truncatum HOM05D002129 ORTHO05D002188 1.1e-21 109.0 157 46.5
vmacro13912 Vaccinium macrocarpon HOM05D002129 ORTHO05D002188 1.1e-21 109.0 183 37.7
Glyma.08G021400 Glycine max HOM05D002129 ORTHO05D002188 1.8e-21 108.2 214 42.5
ClCG07G014890 Citrullus lanatus HOM05D002129 ORTHO05D002188 2.4e-21 107.8 228 41.7
FAN08G2643 Fragaria x ananassa HOM05D002129 ORTHO05D002188 2.4e-21 107.8 207 40.6
Lj4g0008940 Lotus japonicus HOM05D002129 ORTHO05D002188 2.4e-21 107.8 207 41.1
Duzib084G0477 Durio zibethinus HOM05D002129 ORTHO05D002188 4.1e-21 107.1 200 38.5
FAN13G0971 Fragaria x ananassa HOM05D002129 ORTHO05D002188 4.1e-21 107.1 207 40.6
Oeu042387.1 Olea europaea HOM05D002129 ORTHO05D002188 5.3e-21 106.7 194 42.8
Nitab4.5_0004161g0030 Nicotiana tabacum HOM05D002129 ORTHO05D002188 1.2e-20 105.5 207 40.6
QL02p031434 Quercus lobata HOM05D002129 ORTHO05D002188 1.2e-20 105.5 183 40.4
AUR62019808 Chenopodium quinoa HOM05D002129 ORTHO05D002188 1.6e-20 105.1 175 36.0
Glyma.05G215100 Glycine max HOM05D002129 ORTHO05D002188 2.0e-20 104.8 232 40.5
CiPaw.12G085000 Carya illinoinensis HOM05D002129 ORTHO05D002188 2.7e-20 104.4 178 41.6
AUR62010809 Chenopodium quinoa HOM05D002129 ORTHO05D002188 5.9e-20 103.2 174 35.1
CAN.G532.94 Capsicum annuum HOM05D002129 ORTHO05D002188 1.0e-19 102.4 184 41.8
Rhsim07G0084000 Rhododendron simsii HOM05D002129 ORTHO05D002188 1.3e-19 102.1 183 38.8
PGSC0003DMG400012303 Solanum tuberosum HOM05D002129 ORTHO05D002188 1.3e-19 102.1 176 44.3
MSTRG.25657 Avicennia marina HOM05D002129 ORTHO05D002188 8.5e-19 99.4 299 37.5
Lalb_Chr16g0390551 Lupinus albus HOM05D002129 ORTHO05D002188 8.5e-19 99.4 269 31.2
CsaV3_4G006420 Cucumis sativus L. HOM05D002129 ORTHO05D002188 1.1e-18 99.0 228 36.8
CiPaw.11G123900 Carya illinoinensis HOM05D002129 ORTHO05D002188 1.9e-18 98.2 179 35.2
MELO3C016308.2 Cucumis melo HOM05D002129 ORTHO05D002188 7.2e-18 96.3 228 35.5
VMungo0251G1428 Vigna mungo HOM05D002129 ORTHO05D002188 7.2e-18 96.3 272 32.7
MD06G1102300 Malus domestica HOM05D002129 ORTHO05D002188 9.4e-18 95.9 186 41.9
CANSAT21G2383 Cannabis sativa HOM05D002129 ORTHO05D002188 2.1e-17 94.7 185 40.5
Cpa.g.sc79.65 Carica papaya HOM05D002129 ORTHO05D002188 2.7e-17 94.4 214 42.1
SGA_v2.0_scaffold144G35850 Striga asiatica HOM05D002129 ORTHO05D002188 2.7e-17 94.4 262 37.0
A07p20920 Brassica napus HOM05D002129 ORTHO05D002188 3.6e-17 94.0 162 51.9
Lalb_Chr09g0332631 Lupinus albus HOM05D002129 ORTHO05D002188 8.0e-17 92.8 222 36.9
GSVIVG01019499001 Vitis vinifera HOM05D002129 ORTHO05D002188 1.0e-16 92.4 212 34.0
SalBow1G3214 Salvia bowleyana HOM05D002129 ORTHO05D002188 1.4e-16 92.0 254 34.3
ECA233G6022 Erigeron canadensis HOM05D002129 ORTHO05D002188 4.0e-16 90.5 211 38.9
PGR042G1587 Punica granatum HOM05D002129 ORTHO05D002188 4.0e-16 90.5 226 38.9
Dinv38857 Davidia involucrata HOM05D002129 ORTHO05D002188 5.2e-16 90.1 641 25.7
Psat7g027680 Pisum sativum HOM05D002129 ORTHO05D002188 8.8e-16 89.4 214 40.7
SalBow8G2059 Salvia bowleyana HOM05D002129 ORTHO05D002188 8.8e-16 89.4 192 44.8
Sed0022097 Sechium edule HOM05D002129 ORTHO05D002188 8.8e-16 89.4 262 33.6
SGA_v2.0_scaffold111G31429 Striga asiatica HOM05D002129 ORTHO05D002188 1.5e-15 88.6 314 32.2
FAN04G1700 Fragaria x ananassa HOM05D002129 ORTHO05D002188 2.0e-15 88.2 241 35.7
FAN04G3154 Fragaria x ananassa HOM05D002129 ORTHO05D002188 2.0e-15 88.2 241 35.7
Peaxi162Scf00074g01134 Petunia axillaris HOM05D002129 ORTHO05D002188 2.0e-15 88.2 243 35.8
Migut.E01236 Erythranthe guttata HOM05D002129 ORTHO05D002188 4.4e-15 87.0 181 40.3
HanXRQChr03g0085141 Helianthus annuus HOM05D002129 ORTHO05D002188 4.4e-15 87.0 197 41.6
Sc07g0009960 Simmondsia chinensis HOM05D002129 ORTHO05D002188 1.3e-14 85.5 197 36.0
FAN18G4528 Fragaria x ananassa HOM05D002129 ORTHO05D002188 1.7e-14 85.1 161 41.6
HanXRQChr02g0048241 Helianthus annuus HOM05D002129 ORTHO05D002188 2.8e-14 84.3 178 37.1
arahy.Tifrunner.gnm1.ann1.F3VNHJ Arachis hypogaea HOM05D002129 ORTHO05D002188 3.7e-14 84.0 149 34.2
BcaC06g36642 Brassica carinata HOM05D002129 ORTHO05D002188 4.8e-14 83.6 135 45.2
BolC7t40600H Brassica oleracea HOM05D002129 ORTHO05D002188 4.8e-14 83.6 135 45.2
CSS0018198 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 8.3e-14 82.8 248 31.9
arahy.Tifrunner.gnm1.ann1.P7UIV5 Arachis hypogaea HOM05D002129 ORTHO05D002188 1.8e-13 81.6 149 34.2
PSO135G0315 Papaver somniferum HOM05D031015 ORTHO05D002188 1.8e-13 81.6 253 34.4
Lsat_1_v5_gn_6_85821 Lactuca sativa HOM05D002129 ORTHO05D002188 3.1e-13 80.9 199 40.7
Aqoxy5G04152 Aquilegia oxysepala HOM05D002129 ORTHO05D002188 7.0e-13 79.7 280 33.9
CSS0027740 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 7.0e-13 79.7 248 30.2
C08p22900 Brassica napus HOM05D002129 ORTHO05D016708 1.7e-11 75.1 265 45.7
BolC8t49926H Brassica oleracea HOM05D002129 ORTHO05D016708 1.7e-11 75.1 265 45.7
ECA240G2507 Erigeron canadensis HOM05D002129 ORTHO05D002188 1.7e-11 75.1 217 35.9
PSO170G1432 Papaver somniferum HOM05D031015 ORTHO05D002188 2.3e-11 74.7 91 37.4
Actinidia01396 Actinidia chinensis HOM05D002129 ORTHO05D002188 2.9e-11 74.3 252 29.8
DCAR_005027 Daucus carota HOM05D002129 ORTHO05D002188 2.9e-11 74.3 254 29.1
Actinidia04211 Actinidia chinensis HOM05D002129 ORTHO05D002188 3.8e-11 73.9 64 54.7
BcaC07g39281 Brassica carinata HOM05D002129 ORTHO05D016708 5.0e-11 73.6 265 28.3
Rhsim02G0241100 Rhododendron simsii HOM05D002129 ORTHO05D002188 1.1e-10 72.4 64 54.7
CSS0047098 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 1.5e-10 72.0 62 54.8
Prupe.5G115300 Prunus persica HOM05D002129 ORTHO05D002188 1.5e-10 72.0 64 59.4
CSS0006894 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 2.5e-10 71.2 62 54.8
vmacro11445 Vaccinium macrocarpon HOM05D001971 ORTHO05D003057 3.3e-10 70.9 64 53.1
PSO384G3006 Papaver somniferum HOM05D031015 ORTHO05D002188 4.2e-10 70.5 91 35.2
Prupe.5G115200 Prunus persica HOM05D002129 ORTHO05D002188 4.2e-10 70.5 288 28.1
EL10Ac5g12884 Beta vulgaris HOM05D002129 ORTHO05D002188 5.5e-10 70.1 177 40.1
Dinv37551 Davidia involucrata HOM05D002129 ORTHO05D002188 1.2e-09 68.9 57 57.9
Migut.N02095 Erythranthe guttata HOM05D002129 ORTHO05D002188 4.7e-09 67.0 268 26.1
Ca_17494_v3 Cicer arietinum L. HOM05D002129 ORTHO05D002188 6.1e-09 66.6 47 63.8
MD06G1102200 Malus domestica HOM05D002129 ORTHO05D002188 1.4e-08 65.5 284 29.2
Duzib084G0891 Durio zibethinus HOM05D002129 ORTHO05D002188 1.8e-08 65.1 192 28.6
Migut.E01235 Erythranthe guttata HOM05D002129 ORTHO05D002188 2.3e-08 64.7 273 29.7
Gohir.D04G079828 Gossypium hirsutum HOM05D002129 ORTHO05D002188 3.0e-08 64.3 166 29.5
Hund11405 Selenicereus undatus HOM05D002129 ORTHO05D002188 3.0e-08 64.3 165 38.2
CSS0015477 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 4.0e-08 63.9 241 27.0
MD14G1121400 Malus domestica HOM05D002129 ORTHO05D002188 6.8e-08 63.2 283 28.3
TAR374G1003 Trochodendron aralioides HOM05D002129 ORTHO05D002188 8.9e-08 62.8 55 58.2
BcaC07g37238 Brassica carinata HOM05D002129 ORTHO05D002188 1.2e-07 62.4 49 75.5
Duzib068G0910 Durio zibethinus HOM05D002129 ORTHO05D002188 1.2e-07 62.4 55 56.4
Gohir.A05G349350 Gossypium hirsutum HOM05D002129 ORTHO05D002188 1.5e-07 62.0 40 67.5
Gohir.A09G007350 Gossypium hirsutum HOM05D002129 ORTHO05D002188 1.5e-07 62.0 40 67.5
Gorai.008G186100 Gossypium raimondii HOM05D002129 ORTHO05D002188 1.5e-07 62.0 40 67.5
Thecc.03G293100 Theobroma cacao HOM05D002129 ORTHO05D002188 2.0e-07 61.6 249 27.7
CAN.G26.3 Capsicum annuum HOM05D002129 ORTHO05D002188 4.4e-07 60.5 245 27.3
SalBow8G3978 Salvia bowleyana HOM05D002129 ORTHO05D002188 4.4e-07 60.5 63 49.2
SGA_v2.0_scaffold173G39089 Striga asiatica HOM05D002129 ORTHO05D002188 5.7e-07 60.1 55 52.7
Medtr8g099280 Medicago truncatula HOM05D002129 ORTHO05D002188 7.5e-07 59.7 418 29.7
Oeu061086.1 Olea europaea HOM05D002129 ORTHO05D002188 7.5e-07 59.7 294 25.5
Potri.003G137300 Populus trichocarpa HOM05D002129 ORTHO05D002188 7.5e-07 59.7 248 25.8
ECA246G1519 Erigeron canadensis HOM05D002129 ORTHO05D002188 9.8e-07 59.3 62 48.4
COL.COLO4_21719 Corchorus olitorius HOM05D002129 ORTHO05D002188 1.3e-06 58.9 58 51.7
Lj8P210T83 Lonicera japonica HOM05D002129 ORTHO05D002188 1.3e-06 58.9 156 31.4
Nitab4.5_0002944g0210 Nicotiana tabacum HOM05D002129 ORTHO05D002188 1.7e-06 58.5 52 55.8
Nitab4.5_0006656g0010 Nicotiana tabacum HOM05D002129 ORTHO05D002188 1.7e-06 58.5 52 55.8
Sc07g0009950 Simmondsia chinensis HOM05D002129 ORTHO05D002188 1.7e-06 58.5 277 23.5
unitig_748.g7418 Utricularia gibba HOM05D002129 ORTHO05D002188 1.7e-06 58.5 55 50.9
HanXRQChr10g0292651 Helianthus annuus HOM05D002129 ORTHO05D002188 2.2e-06 58.2 62 48.4
Atru.chr9.2043 Acer truncatum HOM05D002129 ORTHO05D002188 3.7e-06 57.4 57 49.1
Solyc08g008260.2 Solanum lycopersicum HOM05D002129 ORTHO05D002188 3.7e-06 57.4 64 50.0
Sopen08g004110 Solanum pennellii HOM05D002129 ORTHO05D002188 3.7e-06 57.4 52 53.8
PGSC0003DMG400005787 Solanum tuberosum HOM05D002129 ORTHO05D002188 4.9e-06 57.0 52 53.8
BcaC02g11041 Brassica carinata HOM05D002129 ORTHO05D016708 6.3e-06 56.6 251 26.3
Cpa.g.sc122.43 Carica papaya HOM05D002129 ORTHO05D002188 6.3e-06 56.6 38 65.8
Sc01g0010120 Simmondsia chinensis HOM05D002129 ORTHO05D002188 6.3e-06 56.6 62 46.8
MSTRG.1816 Avicennia marina HOM05D002129 ORTHO05D002188 8.3e-06 56.2 54 51.9


User provided reference genes

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