Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 0.0e+00 2109.0 1121 100.0
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 0.0e+00 2000.3 1075 98.9
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 0.0e+00 1879.0 1083 94.1
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 0.0e+00 1877.8 1083 94.0
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 0.0e+00 1563.1 1181 76.0
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 0.0e+00 1474.9 1180 72.4
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 0.0e+00 1416.4 1202 69.9
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 0.0e+00 1377.8 1179 69.0
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 0.0e+00 1359.0 1189 68.0
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 0.0e+00 1343.9 1181 67.8
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 1.7e-309 1066.2 1261 55.1
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 5.7e-257 891.7 1273 49.8
BcaB07g31476 Brassica carinata HOM05D002890 ORTHO05D005855 1.9e-236 823.5 463 94.2
BcaC04g22582 Brassica carinata HOM05D002890 ORTHO05D005855 6.6e-221 771.9 446 90.4
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 2.4e-186 657.1 1390 39.3
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 2.9e-184 650.2 1250 41.1
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 6.4e-184 649.0 1395 39.1
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 1.4e-183 647.9 1398 38.5
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 2.4e-183 647.1 1341 39.5
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 2.4e-183 647.1 1398 38.7
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 1.5e-180 637.9 1372 38.7
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 3.1e-178 630.2 1364 38.6
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 4.5e-177 626.3 417 84.4
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 4.5e-177 626.3 1350 39.2
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 3.3e-172 610.1 1376 37.7
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 1.1e-170 605.1 1208 39.8
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 2.4e-170 604.0 1204 40.0
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 1.7e-168 597.8 1335 38.1
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 2.2e-168 597.4 1205 39.1
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 2.1e-166 590.9 1299 38.0
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 5.1e-165 586.3 1428 37.0
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 4.3e-164 583.2 1317 37.8
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 5.7e-164 582.8 1311 38.6
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 6.3e-163 579.3 1162 40.3
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 5.3e-162 576.2 1321 37.1
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 2.0e-161 574.3 1337 36.9
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 2.6e-161 573.9 1301 37.3
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 3.4e-161 573.5 1319 36.8
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 3.4e-161 573.5 1411 37.3
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 1.0e-160 572.0 1341 37.1
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 6.5e-160 569.3 1416 37.2
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 1.1e-159 568.5 1313 37.4
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 1.2e-158 565.1 1303 36.3
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 1.2e-158 565.1 1331 36.5
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 3.9e-157 560.1 1221 38.8
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 1.1e-156 558.5 1360 37.1
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 4.3e-156 556.6 1341 36.7
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.1e-154 552.0 1189 38.5
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 6.9e-154 549.3 1181 39.1
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 2.6e-153 547.4 1198 38.3
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 3.4e-153 547.0 1383 36.3
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 1.3e-152 545.0 1164 38.2
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 3.8e-152 543.5 1225 37.9
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 3.8e-152 543.5 1231 36.8
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 6.5e-152 542.7 1295 36.9
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 4.2e-151 540.0 1251 37.4
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 1.2e-150 538.5 1211 37.6
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 1.2e-150 538.5 1119 39.3
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 2.1e-150 537.7 1312 35.7
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 4.7e-150 536.6 1222 37.4
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 1.8e-149 534.6 1252 38.1
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 3.0e-149 533.9 1252 38.0
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 3.9e-149 533.5 1222 36.6
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 5.1e-149 533.1 1118 38.7
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 1.1e-148 531.9 1195 38.0
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 1.1e-148 531.9 1312 35.4
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 7.4e-148 529.3 1227 36.4
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 1.7e-147 528.1 1140 38.6
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 3.7e-147 526.9 1354 35.5
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 8.2e-147 525.8 1126 38.5
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 4.1e-146 523.5 1266 36.7
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 5.3e-146 523.1 1265 35.0
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 1.3e-144 518.5 1277 34.8
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 1.6e-142 511.5 1229 37.4
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 5.7e-140 503.1 1122 36.7
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 7.4e-140 502.7 1251 36.1
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 1.3e-139 501.9 1342 34.9
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 2.8e-139 500.7 1112 37.6
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 5.3e-138 496.5 1202 36.3
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 1.6e-137 495.0 1299 36.4
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 7.7e-137 492.7 1356 34.0
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 1.0e-136 492.3 1255 34.7
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 3.8e-136 490.3 1267 34.9
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 1.2e-134 485.3 1190 36.3
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 1.6e-134 485.0 1252 34.8
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 1.0e-133 482.3 1271 35.6
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 3.7e-131 473.8 1337 33.1
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 2.2e-128 464.5 1086 36.1
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 3.0e-125 454.1 1276 35.1
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 4.4e-124 450.3 1343 34.2
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 1.8e-122 444.9 1307 32.7
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 1.2e-118 432.2 1205 34.8
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 3.6e-118 430.6 958 36.1
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 2.3e-117 427.9 1122 34.8
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 1.5e-116 425.2 1063 34.9
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 1.2e-110 405.6 1311 32.1
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 5.2e-109 400.2 1298 31.4
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 2.2e-107 394.8 1362 31.1
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 3.0e-104 384.4 935 37.0
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 1.4e-101 375.6 1266 32.2
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 9.2e-98 362.8 1158 32.4
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.0e-96 359.4 829 35.8
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 8.6e-96 356.3 949 33.8
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 1.8e-93 348.6 1143 34.0
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.6e-92 344.7 541 45.1
BcaC01g05870 Brassica carinata HOM05D002890 ORTHO05D005855 3.6e-86 324.3 414 51.7
Atru.chr10.2227 Acer truncatum HOM05D002890 ORTHO05D005855 1.5e-84 318.9 574 43.2
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 1.5e-84 318.9 780 35.0
Actinidia10696 Actinidia chinensis HOM05D002890 ORTHO05D005855 8.7e-80 303.1 666 35.9
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 7.6e-76 290.0 452 44.9
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 5.6e-71 273.9 888 29.6
BolC3t14541H Brassica oleracea HOM05D002890 ORTHO05D005855 6.2e-70 270.4 933 30.5
SGA_v2.0_scaffold25G10747 Striga asiatica HOM05D002890 ORTHO05D005855 2.1e-65 255.4 567 36.5
HPP92_025078 Vanilla planifolia HOM05D002890 ORTHO05D005855 1.1e-61 243.0 439 42.4
Oeu039345.1 Olea europaea HOM05D002890 ORTHO05D005855 2.6e-60 238.4 416 39.9
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 9.9e-60 236.5 484 40.3
Nn4g25681 Nelumbo nucifera HOM05D002890 ORTHO05D005855 3.0e-56 224.9 621 36.1
Atru.chr10.2228 Acer truncatum HOM05D002890 ORTHO05D005855 1.1e-55 223.0 692 30.3
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 1.9e-55 222.2 661 31.8
RcHm_v2.0_Chr5g0003091 Rosa chinensis HOM05D002890 ORTHO05D005855 6.5e-43 180.6 293 42.3
Lj1P1230T41 Lonicera japonica HOM05D002890 ORTHO05D005855 9.1e-37 160.2 283 44.9
SHI01979 Sapria himalayana HOM05D002890 ORTHO05D005855 9.1e-37 160.2 155 56.8
MD05G1347100 Malus domestica HOM05D002890 ORTHO05D005855 3.8e-35 154.8 333 35.7
RcHm_v2.0_Chr5g0003031 Rosa chinensis HOM05D002890 ORTHO05D005855 1.8e-32 146.0 175 50.9
Medtr2g023290 Medicago truncatula HOM05D002975 ORTHO05D005855 2.3e-32 145.6 489 32.1
Oeu002905.1 Olea europaea HOM05D002890 ORTHO05D005855 4.4e-31 141.4 487 29.0
Potri.004G015034 Populus trichocarpa HOM05D002890 ORTHO05D005855 4.4e-31 141.4 234 40.6
CBR_g32188 Chara braunii HOM05D002890 ORTHO05D005855 8.2e-30 137.1 177 42.4
Duzib160G0022 Durio zibethinus HOM05D002890 ORTHO05D005855 5.7e-23 114.4 252 42.5
SEGI_38151 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 7.4e-23 114.0 423 28.4
Cpa.g.c46709 Carica papaya HOM05D002890 ORTHO05D005855 2.8e-22 112.1 136 50.0
BcaB01g03945 Brassica carinata HOM05D002890 ORTHO05D005855 2.6e-20 105.5 316 33.2
BcaC01g05871 Brassica carinata HOM05D002890 ORTHO05D005855 2.6e-20 105.5 316 33.2
CiPaw.10G071000 Carya illinoinensis HOM05D002890 ORTHO05D005855 1.2e-17 96.7 260 38.8
QL05p073148 Quercus lobata HOM05D002890 ORTHO05D005855 1.8e-16 92.8 548 25.9
QL05p073153 Quercus lobata HOM05D002890 ORTHO05D005855 1.7e-14 86.3 434 26.3
Potri.004G015001 Populus trichocarpa HOM05D002890 ORTHO05D005855 6.3e-14 84.3 189 34.4
HPP92_025077 Vanilla planifolia HOM05D002890 ORTHO05D005855 5.3e-13 81.3 496 29.2
Nitab4.5_0002954g0060 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.5e-12 78.6 97 61.9
Nitab4.5_0000267g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.1e-10 73.6 134 38.1
MCO05G671 Micromonas commoda HOM05D002890 ORTHO05D005855 2.5e-10 72.4 150 34.0
SEGI_20102 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 1.0e-08 67.0 76 44.7
Nitab4.5_0002954g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.0e-07 62.8 55 50.9
SEGI_38924 Sequoiadendron giganteum HOM05D009358 ORTHO05D011087 3.7e-06 58.5 202 31.2


User provided reference genes

Program Settings