Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p14360 Brassica napus HOM05D010600 ORTHO05D007875 1.0e-57 226.5 114 100.0
BraA09t37083Z Brassica rapa HOM05D010600 ORTHO05D007875 1.0e-57 226.5 114 100.0
BcaC04g22619 Brassica carinata HOM05D010600 ORTHO05D007875 4.1e-54 214.5 114 96.5
C09p17280 Brassica napus HOM05D010600 ORTHO05D007875 7.0e-54 213.8 114 96.5
BolC9t54630H Brassica oleracea HOM05D010600 ORTHO05D007875 7.0e-54 213.8 114 96.5
BcaB07g31500 Brassica carinata HOM05D010600 ORTHO05D007875 3.0e-52 208.4 114 93.9
Thhalv10023875m.g Eutrema salsugineum HOM05D010600 ORTHO05D007875 2.1e-42 175.6 120 80.8
AT1G64405 Arabidopsis thaliana HOM05D010600 ORTHO05D007875 4.0e-41 171.4 121 79.3
BcaB07g31463 Brassica carinata HOM05D010600 ORTHO05D007875 4.0e-41 171.4 118 78.8
AL2G10440 Arabidopsis lyrata HOM05D010600 ORTHO05D007875 2.6e-40 168.7 117 78.6
C09p17810 Brassica napus HOM05D010600 ORTHO05D007875 1.1e-38 163.3 121 76.0
BolC9t54679H Brassica oleracea HOM05D010600 ORTHO05D007875 1.1e-38 163.3 121 76.0
Sp2g00320 Schrenkiella parvula HOM05D010600 ORTHO05D007875 1.1e-38 163.3 120 78.3
BcaC04g22568 Brassica carinata HOM05D010600 ORTHO05D007875 7.8e-37 157.1 122 74.6
Carub.0002s0036 Capsella rubella HOM05D010600 ORTHO05D007875 8.6e-36 153.7 119 72.3
CARHR046510 Cardamine hirsuta HOM05D010600 ORTHO05D007875 3.6e-34 148.3 120 69.2
Aa31LG2G1420 Aethionema arabicum HOM05D010600 ORTHO05D007875 1.5e-32 142.9 121 66.9
A09p14720 Brassica napus HOM05D010600 ORTHO05D007875 1.3e-28 129.8 119 63.0
BraA09t37118Z Brassica rapa HOM05D010600 ORTHO05D007875 1.3e-28 129.8 119 63.0
THA.LOC104817601 Tarenaya hassleriana HOM05D010600 ORTHO05D007875 4.4e-24 114.8 114 59.6
Rhsim02G0243500 Rhododendron simsii HOM05D007590 ORTHO05D007875 3.5e-13 78.6 115 42.6
Cpa.g.sc79.34 Carica papaya HOM05D007590 ORTHO05D007875 4.6e-13 78.2 118 42.4
TAR629G1835 Trochodendron aralioides HOM05D007590 ORTHO05D007875 1.0e-12 77.0 112 46.4
Prupe.5G120200 Prunus persica HOM05D007590 ORTHO05D007875 5.1e-12 74.7 118 40.7
TAR375G1006 Trochodendron aralioides HOM05D007590 ORTHO05D007875 5.1e-12 74.7 112 45.5
CiPaw.12G082900 Carya illinoinensis HOM05D007590 ORTHO05D007875 1.5e-11 73.2 115 41.7
Thecc.03G298200 Theobroma cacao HOM05D007590 ORTHO05D007875 5.6e-11 71.2 119 42.0
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 2.1e-10 69.3 113 43.4
AUR62010841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 3.6e-10 68.6 114 39.5
TAR636G1032 Trochodendron aralioides HOM05D007590 ORTHO05D007875 3.6e-10 68.6 111 37.8
AUR62019841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 1.4e-09 66.6 114 38.6
Duzib068G0682 Durio zibethinus HOM05D007590 ORTHO05D007875 1.4e-09 66.6 116 38.8
Aqoxy5G04230 Aquilegia oxysepala HOM05D007590 ORTHO05D007875 1.8e-09 66.2 113 41.6
CiPaw.11G121300 Carya illinoinensis HOM05D007590 ORTHO05D007875 1.8e-09 66.2 115 41.7
RcHm_v2.0_Chr7g0194781 Rosa chinensis HOM05D007590 ORTHO05D007875 1.8e-09 66.2 117 37.6
Duzib205G1174 Durio zibethinus HOM05D007590 ORTHO05D007875 2.4e-09 65.9 113 40.7
Hma1.2p1_1746F.1_g300410 Hydrangea macrophylla HOM05D007590 ORTHO05D007875 3.1e-09 65.5 119 38.7
CSS0045762 Camellia sinensis var. sinensis HOM05D007590 ORTHO05D007875 4.0e-09 65.1 116 39.7
TAR374G1746 Trochodendron aralioides HOM05D007590 ORTHO05D007875 9.0e-09 63.9 114 40.4
FAN08G0943 Fragaria x ananassa HOM05D007590 ORTHO05D007875 1.2e-08 63.5 116 37.1
LjContig00312_ERROPOS870357g0000452 Lotus japonicus HOM05D007590 ORTHO05D007875 2.6e-08 62.4 121 36.4
Peaxi162Scf00102g00178 Petunia axillaris HOM05D007590 ORTHO05D007875 3.4e-08 62.0 113 40.7
FAN13G0413 Fragaria x ananassa HOM05D007590 ORTHO05D007875 5.8e-08 61.2 116 34.5
Cc08_g16080 Coffea canephora HOM05D007590 ORTHO05D007875 7.6e-08 60.8 123 38.2
PGSC0003DMG400012280 Solanum tuberosum HOM05D007590 ORTHO05D007875 9.9e-08 60.5 112 39.3
Manes.02G009900 Manihot esculenta HOM05D007590 ORTHO05D007875 1.3e-07 60.1 121 38.0
Cfa012011 Carpinus fangiana HOM05D007590 ORTHO05D007875 2.9e-07 58.9 127 37.8
Duzib068G0902 Durio zibethinus HOM05D007590 ORTHO05D007875 2.9e-07 58.9 112 40.2
Nn1g01873 Nelumbo nucifera HOM05D007590 ORTHO05D007875 2.9e-07 58.9 119 37.8
TAR629G2201 Trochodendron aralioides HOM05D007590 ORTHO05D007875 2.9e-07 58.9 116 40.5
Ah.12g052560 Amaranthus hybridus HOM05D007590 ORTHO05D007875 3.8e-07 58.5 119 31.9
Ciclev10022592m.g Citrus clementina HOM05D007590 ORTHO05D007875 3.8e-07 58.5 112 34.8
FAN04G0970 Fragaria x ananassa HOM05D007590 ORTHO05D007875 3.8e-07 58.5 116 34.5
QL02p030422 Quercus lobata HOM05D007590 ORTHO05D007875 3.8e-07 58.5 120 35.8
Sopen08g004200 Solanum pennellii HOM05D007590 ORTHO05D007875 3.8e-07 58.5 122 37.7
Duzib084G0874 Durio zibethinus HOM05D007590 ORTHO05D007875 4.9e-07 58.2 110 36.4
Gohir.D12G237700 Gossypium hirsutum HOM05D007590 ORTHO05D007875 6.4e-07 57.8 108 34.3
Gohir.D12G237966 Gossypium hirsutum HOM05D007590 ORTHO05D007875 6.4e-07 57.8 108 34.3
Gorai.008G254500 Gossypium raimondii HOM05D007590 ORTHO05D007875 8.4e-07 57.4 108 35.2
Nn3g19015 Nelumbo nucifera HOM05D007590 ORTHO05D007875 8.4e-07 57.4 114 37.7
HanXRQChr03g0083501 Helianthus annuus HOM05D007590 ORTHO05D007875 1.1e-06 57.0 114 41.2
Potri.003G140100 Populus trichocarpa HOM05D007590 ORTHO05D007875 1.4e-06 56.6 115 33.9
CDE10G0175 Ceratophyllum demersum HOM05D007590 ORTHO05D007875 1.9e-06 56.2 112 34.8
Solyc08g082370.1 Solanum lycopersicum HOM05D007590 ORTHO05D007875 2.4e-06 55.8 111 37.8
ATR0602G105 Amborella trichopoda HOM05D007590 ORTHO05D007875 4.2e-06 55.1 129 34.1
CiPaw.12G082700 Carya illinoinensis HOM05D007590 ORTHO05D007875 4.2e-06 55.1 115 36.5
CDE10G0927 Ceratophyllum demersum HOM05D007590 ORTHO05D007875 4.2e-06 55.1 107 38.3
Manes.02G010000 Manihot esculenta HOM05D007590 ORTHO05D007875 4.2e-06 55.1 117 35.0
Peaxi162Scf00074g00097 Petunia axillaris HOM05D007590 ORTHO05D007875 4.2e-06 55.1 92 41.3
TWI60G0225 Tripterygium wilfordii HOM05D007590 ORTHO05D007875 4.2e-06 55.1 115 32.2
MSTRG.25673 Avicennia marina HOM05D007590 ORTHO05D007875 5.5e-06 54.7 115 35.7
Glyma.11G017400 Glycine max HOM05D007590 ORTHO05D007875 5.5e-06 54.7 112 32.1
Manes.01G049200 Manihot esculenta HOM05D007590 ORTHO05D007875 5.5e-06 54.7 107 35.5
Potri.001G091500 Populus trichocarpa HOM05D007590 ORTHO05D007875 5.5e-06 54.7 115 33.9
Sopen08g030630 Solanum pennellii HOM05D007590 ORTHO05D007875 5.5e-06 54.7 111 36.9
PGSC0003DMG400005790 Solanum tuberosum HOM05D007590 ORTHO05D007875 5.5e-06 54.7 113 34.5
Lsat_1_v5_gn_6_83961 Lactuca sativa HOM05D007590 ORTHO05D007875 7.1e-06 54.3 115 39.1
Medtr5g009260 Medicago truncatula HOM05D007590 ORTHO05D007875 7.1e-06 54.3 112 34.8
Eucgr.D01739 Eucalyptus grandis HOM05D007590 ORTHO05D007875 9.3e-06 53.9 136 30.1


User provided reference genes

Program Settings