Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p13740 Brassica napus HOM05D017407 ORTHO05D014521 1.9e-75 285.8 147 100.0
BraA10t43176Z Brassica rapa HOM05D017407 ORTHO05D014521 6.9e-70 267.3 166 87.3
A06p03600 Brassica napus HOM05D017407 ORTHO05D014521 3.4e-53 211.8 147 80.3
BolC1t02878H Brassica oleracea HOM05D017407 ORTHO05D014521 4.1e-46 188.3 147 72.1
C01p29390 Brassica napus HOM05D017407 ORTHO05D014521 1.2e-45 186.8 147 72.1
BcaC09g50070 Brassica carinata HOM05D017407 ORTHO05D014521 6.5e-44 181.0 167 64.1
BraA09t37026Z Brassica rapa HOM05D017407 ORTHO05D014521 1.2e-21 107.1 55 100.0
C02p54330 Brassica napus HOM05D000631 ORTHO05D014970 6.3e-15 84.7 62 72.6
BolC2t10119H Brassica oleracea HOM05D000631 ORTHO05D014521 5.9e-13 78.2 61 72.1
C07p27850 Brassica napus HOM05D000631 ORTHO05D014521 7.8e-13 77.8 61 70.5
BcaB02g07211 Brassica carinata HOM05D000631 ORTHO05D000524 2.9e-12 75.9 61 70.5
BcaC03g17474 Brassica carinata HOM05D000631 ORTHO05D014970 8.6e-12 74.3 67 59.7
BcaC08g45361 Brassica carinata HOM05D000631 ORTHO05D000524 1.1e-11 73.9 61 68.9
A07p27180 Brassica napus HOM05D000631 ORTHO05D000524 1.1e-11 73.9 61 68.9
C06p29930 Brassica napus HOM05D000631 ORTHO05D000524 1.1e-11 73.9 61 68.9
BolC6t38154H Brassica oleracea HOM05D000631 ORTHO05D000524 1.1e-11 73.9 61 68.9
BraA07t30362Z Brassica rapa HOM05D000631 ORTHO05D000524 1.1e-11 73.9 61 68.9
Thhalv10018670m.g Eutrema salsugineum HOM05D000631 ORTHO05D000524 1.1e-11 73.9 61 70.5
CARHR073030 Cardamine hirsuta HOM05D000631 ORTHO05D000524 1.9e-11 73.2 61 68.9
A07p44450 Brassica napus HOM05D000631 ORTHO05D000524 2.5e-11 72.8 72 58.3
BcaB02g08677 Brassica carinata HOM05D000631 ORTHO05D000524 5.6e-11 71.6 61 65.6
BraA07t31954Z Brassica rapa HOM05D000631 ORTHO05D000524 5.6e-11 71.6 61 63.9
BcaC08g47497 Brassica carinata HOM05D000631 ORTHO05D000524 1.2e-10 70.5 61 65.6
C06p53260 Brassica napus HOM05D000631 ORTHO05D000524 1.2e-10 70.5 61 65.6
AL2G39990 Arabidopsis lyrata HOM05D000631 ORTHO05D000524 1.6e-10 70.1 61 67.2
AT1G79380 Arabidopsis thaliana HOM05D000631 ORTHO05D000524 1.6e-10 70.1 61 67.2
Sp5g34430 Schrenkiella parvula HOM05D000631 ORTHO05D000524 1.6e-10 70.1 61 65.6
C08p10600 Brassica napus HOM05D000631 ORTHO05D014521 2.1e-10 69.7 77 54.5
Carub.0002s2624 Capsella rubella HOM05D000631 ORTHO05D000524 4.7e-10 68.6 61 63.9
Aa31LG4G1650 Aethionema arabicum HOM05D000631 ORTHO05D000524 6.1e-10 68.2 60 65.0
THA.LOC104812390 Tarenaya hassleriana HOM05D000631 ORTHO05D000524 6.8e-09 64.7 61 62.3
CiPaw.15G112100 Carya illinoinensis HOM05D000631 ORTHO05D000524 2.0e-08 63.2 80 48.8
CiPaw.15G112300 Carya illinoinensis HOM05D000631 ORTHO05D000524 2.0e-08 63.2 80 48.8
CiPaw.15G112500 Carya illinoinensis HOM05D000631 ORTHO05D000524 2.0e-08 63.2 80 48.8
Lalb_Chr01g0007261 Lupinus albus HOM05D000631 ORTHO05D000524 3.4e-08 62.4 61 57.4
C06p00680 Brassica napus HOM05D000631 ORTHO05D028122 5.8e-08 61.6 95 43.2
Dinv42455 Davidia involucrata HOM05D000631 ORTHO05D000524 7.5e-08 61.2 61 57.4
Rhsim06G0244700 Rhododendron simsii HOM05D000631 ORTHO05D000524 7.5e-08 61.2 61 57.4
vmacro22496 Vaccinium macrocarpon HOM05D000631 ORTHO05D000524 7.5e-08 61.2 61 57.4
C03p71180 Brassica napus HOM05D000631 ORTHO05D028122 9.8e-08 60.8 53 62.3
BolC6t35205H Brassica oleracea HOM05D000631 ORTHO05D028122 9.8e-08 60.8 53 62.3
Hma1.2p1_0151F.1_g066960 Hydrangea macrophylla HOM05D000631 ORTHO05D000524 9.8e-08 60.8 60 58.3
COL.COLO4_03546 Corchorus olitorius HOM05D000631 ORTHO05D000524 1.3e-07 60.5 61 57.4
Solyc05g053870.3 Solanum lycopersicum HOM05D000631 ORTHO05D000524 1.7e-07 60.1 60 56.7
Sopen05g032340 Solanum pennellii HOM05D000631 ORTHO05D000524 1.7e-07 60.1 60 56.7
BolC6t40344H Brassica oleracea HOM05D000631 ORTHO05D000524 2.2e-07 59.7 89 44.9
CSS0036775 Camellia sinensis var. sinensis HOM05D000631 ORTHO05D000524 2.2e-07 59.7 61 54.1
PGSC0003DMG400015742 Solanum tuberosum HOM05D000631 ORTHO05D000524 2.2e-07 59.7 60 56.7
Cc10_g14580 Coffea canephora HOM05D000631 ORTHO05D000524 2.9e-07 59.3 60 55.0
Phvul.011G179700 Phaseolus vulgaris HOM05D000631 ORTHO05D000524 2.9e-07 59.3 73 46.6
SGA_v2.0_scaffold186G40174 Striga asiatica HOM05D000631 ORTHO05D000524 2.9e-07 59.3 60 56.7
Ciclev10005036m.g Citrus clementina HOM05D000631 ORTHO05D000524 3.7e-07 58.9 61 55.7
Glyma.08G234200 Glycine max HOM05D000631 ORTHO05D000524 3.7e-07 58.9 61 55.7
Glyma.15G219300 Glycine max HOM05D000631 ORTHO05D000524 4.9e-07 58.5 73 46.6
VMungo1127G1003 Vigna mungo HOM05D000631 ORTHO05D000524 4.9e-07 58.5 73 46.6
Os08g0135400 Oryza sativa ssp. japonica HOM05D000631 ORTHO05D000524 6.4e-07 58.2 61 54.1
Sabra10G0134600 Salix brachista HOM05D000631 ORTHO05D000524 6.4e-07 58.2 61 54.1
A03p22920 Brassica napus HOM05D017407 ORTHO05D014521 8.3e-07 57.8 37 81.1
Eucgr.F01479 Eucalyptus grandis HOM05D000631 ORTHO05D000524 8.3e-07 57.8 60 56.7
Nitab4.5_0000161g0160 Nicotiana tabacum HOM05D000631 ORTHO05D000524 8.3e-07 57.8 60 55.0
Nitab4.5_0007578g0050 Nicotiana tabacum HOM05D000631 ORTHO05D000524 8.3e-07 57.8 60 53.3
Gohir.D13G130300 Gossypium hirsutum HOM05D000631 ORTHO05D000524 1.1e-06 57.4 60 56.7
QL04p095712 Quercus lobata HOM05D000631 ORTHO05D000524 1.1e-06 57.4 61 55.7
QL04p096200 Quercus lobata HOM05D000631 ORTHO05D000524 1.1e-06 57.4 61 55.7
RcHm_v2.0_Chr5g0023161 Rosa chinensis HOM05D000631 ORTHO05D000524 1.1e-06 57.4 61 52.5
SalBow8G1982 Salvia bowleyana HOM05D000631 ORTHO05D000524 1.1e-06 57.4 60 56.7
SalBow8G2503 Salvia bowleyana HOM05D000631 ORTHO05D000524 1.1e-06 57.4 60 56.7
TWI38G1805 Tripterygium wilfordii HOM05D000631 ORTHO05D000524 1.1e-06 57.4 60 55.0
TWI38G2329 Tripterygium wilfordii HOM05D000631 ORTHO05D000524 1.1e-06 57.4 60 55.0
Gohir.A13G126600 Gossypium hirsutum HOM05D000631 ORTHO05D000524 1.4e-06 57.0 60 56.7
Lj3g0008849 Lotus japonicus HOM05D000631 ORTHO05D000524 1.4e-06 57.0 61 52.5
Lj3g0009084 Lotus japonicus HOM05D000631 ORTHO05D000524 1.4e-06 57.0 61 52.5
Psat4g142240 Pisum sativum HOM05D000631 ORTHO05D000524 1.4e-06 57.0 61 52.5
CANSAT56G1845 Cannabis sativa HOM05D000631 ORTHO05D000524 1.9e-06 56.6 61 54.1
Ca_22980_v3 Cicer arietinum L. HOM05D000631 ORTHO05D000524 1.9e-06 56.6 61 54.1
Migut.M01497 Erythranthe guttata HOM05D000631 ORTHO05D000524 1.9e-06 56.6 60 55.0
Gohir.D08G251900 Gossypium hirsutum HOM05D000631 ORTHO05D000524 1.9e-06 56.6 80 45.0
Gorai.004G268600 Gossypium raimondii HOM05D000631 ORTHO05D000524 1.9e-06 56.6 80 45.0
Gorai.013G146400 Gossypium raimondii HOM05D000631 ORTHO05D000524 1.9e-06 56.6 60 56.7
Lsat_1_v5_gn_0_36841 Lactuca sativa HOM05D000631 ORTHO05D000524 1.9e-06 56.6 52 55.8
Manes.16G049700 Manihot esculenta HOM05D000631 ORTHO05D000524 1.9e-06 56.6 61 52.5
Medtr8g447220 Medicago truncatula HOM05D000631 ORTHO05D000524 1.9e-06 56.6 61 54.1
Nn7g38407 Nelumbo nucifera HOM05D000631 ORTHO05D000524 1.9e-06 56.6 61 57.4
Sabra08G0060500 Salix brachista HOM05D000631 ORTHO05D000524 1.9e-06 56.6 61 52.5
TPR.G30136 Trifolium pratense HOM05D000631 ORTHO05D000524 1.9e-06 56.6 61 54.1
BcaC07g38310 Brassica carinata HOM05D000631 ORTHO05D014970 2.4e-06 56.2 36 75.0
CSS0042917 Camellia sinensis var. sinensis HOM05D000631 ORTHO05D000524 2.4e-06 56.2 61 50.8
Duzib213G0984 Durio zibethinus HOM05D000631 ORTHO05D000524 2.4e-06 56.2 61 54.1
FAN16G1286 Fragaria x ananassa HOM05D000631 ORTHO05D000524 2.4e-06 56.2 61 54.1
FAN21G1150 Fragaria x ananassa HOM05D000631 ORTHO05D000524 2.4e-06 56.2 61 54.1
MD10G1217900 Malus domestica HOM05D000631 ORTHO05D000524 2.4e-06 56.2 60 53.3
Peaxi162Scf00423g00729 Petunia axillaris HOM05D000631 ORTHO05D000524 2.4e-06 56.2 60 53.3
Potri.010G174800 Populus trichocarpa HOM05D000631 ORTHO05D000524 2.4e-06 56.2 61 50.8
Prupe.4G126200 Prunus persica HOM05D000631 ORTHO05D000524 2.4e-06 56.2 60 55.0
Thecc.07G190400 Theobroma cacao HOM05D000631 ORTHO05D000524 2.4e-06 56.2 61 54.1
BcaC03g16300 Brassica carinata HOM05D000631 ORTHO05D014970 3.2e-06 55.8 36 75.0
C04p50330 Brassica napus HOM05D000631 ORTHO05D041338 3.2e-06 55.8 36 72.2
FvH4_3g13940 Fragaria vesca HOM05D000631 ORTHO05D000524 3.2e-06 55.8 61 52.5
FAN11G2170 Fragaria x ananassa HOM05D000631 ORTHO05D000524 3.2e-06 55.8 61 52.5
Nn7g38408 Nelumbo nucifera HOM05D000631 ORTHO05D000524 3.2e-06 55.8 61 57.4
PGR044G0647 Punica granatum HOM05D000631 ORTHO05D000524 3.2e-06 55.8 61 50.8
Aqoxy1G01379 Aquilegia oxysepala HOM05D000631 ORTHO05D000524 4.1e-06 55.5 61 54.1
DCAR_013712 Daucus carota HOM05D000631 ORTHO05D000524 4.1e-06 55.5 60 53.3
MBI18_g12048_MAGBIO Magnolia biondii HOM05D000631 ORTHO05D000524 4.1e-06 55.5 61 52.5
MD05G1239600 Malus domestica HOM05D000631 ORTHO05D000524 4.1e-06 55.5 60 51.7
Medtr2g063857 Medicago truncatula HOM05D000631 ORTHO05D000524 4.1e-06 55.5 60 50.0
Psat1g015840 Pisum sativum HOM05D000631 ORTHO05D000524 4.1e-06 55.5 66 47.0
RhsimUnG0215200 Rhododendron simsii HOM05D000631 ORTHO05D000524 4.1e-06 55.5 68 42.6
TAR629G0793 Trochodendron aralioides HOM05D000631 ORTHO05D000524 4.1e-06 55.5 60 55.0
VMungo1080G1481 Vigna mungo HOM05D000631 ORTHO05D000524 5.4e-06 55.1 61 52.5
Zm00001eb261900 Zea mays HOM05D000631 ORTHO05D000524 5.4e-06 55.1 61 52.5
FAN25G1676 Fragaria x ananassa HOM05D000631 ORTHO05D000524 7.0e-06 54.7 61 50.8
Gohir.A08G231500 Gossypium hirsutum HOM05D000631 ORTHO05D000524 7.0e-06 54.7 61 52.5
Lj2A8T44 Lonicera japonica HOM05D000631 ORTHO05D000524 7.0e-06 54.7 60 53.3
PGR044G1023 Punica granatum HOM05D000631 ORTHO05D000524 7.0e-06 54.7 61 52.5


User provided reference genes

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