Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 0.0e+00 1239.2 718 100.0
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 0.0e+00 1225.7 718 98.9
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 0.0e+00 1190.3 718 96.5
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 0.0e+00 1184.5 718 96.2
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 0.0e+00 1105.5 724 88.7
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 1.2e-289 999.6 721 82.0
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 1.5e-287 992.6 716 81.8
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 2.1e-284 982.2 718 81.2
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 1.3e-283 979.5 718 80.1
BcaC04g22803 Brassica carinata HOM05D004485 ORTHO05D005485 5.6e-282 974.2 607 95.6
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 7.8e-268 927.2 724 77.1
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 1.4e-264 916.4 722 76.9
Aa31LG8G16840 Aethionema arabicum HOM05D004485 ORTHO05D005485 1.6e-244 849.7 715 73.0
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 4.8e-201 705.3 713 62.7
Thecc.09G101900 Theobroma cacao HOM05D004485 ORTHO05D005485 5.9e-199 698.4 737 60.8
Atru.chr7.1446 Acer truncatum HOM05D004485 ORTHO05D005485 5.0e-198 695.3 728 62.1
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 5.5e-197 691.8 742 59.0
Glyma.01G008900 Glycine max HOM05D004485 ORTHO05D005485 9.5e-197 691.0 721 61.0
QL02p042072 Quercus lobata HOM05D004485 ORTHO05D005485 9.5e-197 691.0 728 60.4
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 6.1e-196 688.3 728 59.8
Glyma.16G077500 Glycine max HOM05D004485 ORTHO05D005485 1.8e-195 686.8 721 60.7
GSVIVG01015314001 Vitis vinifera HOM05D004485 ORTHO05D005485 6.8e-195 684.9 726 60.6
Prupe.7G221400 Prunus persica HOM05D004485 ORTHO05D005485 9.8e-194 681.0 771 57.3
CiPaw.03G226100 Carya illinoinensis HOM05D004485 ORTHO05D005485 1.3e-193 680.6 729 59.9
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 1.4e-192 677.2 729 60.6
MD02G1064300 Malus domestica HOM05D004485 ORTHO05D005485 7.0e-192 674.9 728 59.9
CANSAT56G2449 Cannabis sativa HOM05D004485 ORTHO05D005485 2.0e-191 673.3 722 59.7
MD15G1195100 Malus domestica HOM05D004485 ORTHO05D005485 2.0e-191 673.3 731 59.5
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 5.9e-191 671.8 725 59.0
Sabra18G0074900 Salix brachista HOM05D004485 ORTHO05D005485 1.3e-190 670.6 723 59.5
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.3e-190 669.8 737 58.3
Potri.018G086600 Populus trichocarpa HOM05D004485 ORTHO05D005485 1.5e-189 667.2 721 59.1
CsaV3_2G001970 Cucumis sativus L. HOM05D004485 ORTHO05D005485 1.2e-188 664.1 722 58.7
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 1.2e-188 664.1 734 58.7
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 1.6e-188 663.7 735 58.9
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 2.8e-188 662.9 730 58.6
MELO3C004583.2 Cucumis melo HOM05D004485 ORTHO05D005485 1.8e-187 660.2 732 58.1
CiPaw.04G158800 Carya illinoinensis HOM05D004485 ORTHO05D005485 4.0e-187 659.1 745 58.1
Gohir.A06G066600 Gossypium hirsutum HOM05D004485 ORTHO05D005485 5.2e-187 658.7 727 58.9
Duzib187G1416 Durio zibethinus HOM05D004485 ORTHO05D005485 2.0e-186 656.8 726 59.8
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 2.0e-186 656.8 729 59.3
Actinidia09445 Actinidia chinensis HOM05D004485 ORTHO05D005485 2.6e-186 656.4 731 57.9
Sed0011847 Sechium edule HOM05D004485 ORTHO05D005485 3.4e-186 656.0 734 57.4
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 2.9e-185 652.9 617 64.5
Gohir.D06G065100 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.1e-184 651.0 727 58.5
Solyc12g008390.3 Solanum lycopersicum HOM05D004485 ORTHO05D005485 2.7e-183 646.4 747 56.5
Eucgr.C01004 Eucalyptus grandis HOM05D004485 ORTHO05D005485 4.6e-183 645.6 735 58.0
Lalb_Chr14g0371821 Lupinus albus HOM05D004485 ORTHO05D005485 4.6e-183 645.6 731 58.7
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 1.0e-182 644.4 611 64.6
CSS0009570 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 5.0e-182 642.1 725 57.4
Sopen12g003350 Solanum pennellii HOM05D004485 ORTHO05D005485 8.6e-182 641.3 747 56.2
Actinidia17528 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.9e-181 640.2 727 56.8
Lalb_Chr24g0397331 Lupinus albus HOM05D004485 ORTHO05D005485 9.5e-181 637.9 732 57.0
Sc08g0007920 Simmondsia chinensis HOM05D004485 ORTHO05D005485 8.9e-179 631.3 729 55.7
EL10Ac8g18398 Beta vulgaris HOM05D004485 ORTHO05D005485 3.4e-178 629.4 721 55.5
FAN19G2910 Fragaria x ananassa HOM05D004485 ORTHO05D005485 5.8e-178 628.6 735 56.9
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 2.9e-177 626.3 718 57.2
Migut.K00530 Erythranthe guttata HOM05D004485 ORTHO05D005485 2.0e-175 620.2 710 56.5
Nitab4.5_0013389g0010 Nicotiana tabacum HOM05D004485 ORTHO05D005485 3.0e-174 616.3 783 53.6
PSO210G4150 Papaver somniferum HOM05D004485 ORTHO05D005485 3.0e-174 616.3 728 55.2
Haze_25812 Corylus avellana HOM05D004485 ORTHO05D005485 1.1e-173 614.4 702 58.8
ClCG11G002190 Citrullus lanatus HOM05D004485 ORTHO05D005485 3.3e-173 612.8 735 54.7
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 9.5e-173 611.3 735 56.1
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 8.9e-171 604.7 729 54.9
Oeu053166.1 Olea europaea HOM05D004485 ORTHO05D005485 8.9e-171 604.7 724 55.0
MSTRG.26380 Avicennia marina HOM05D004485 ORTHO05D005485 1.2e-170 604.4 726 55.0
Phvul.004G170300 Phaseolus vulgaris HOM05D004485 ORTHO05D005485 6.4e-169 598.6 732 53.7
VMungo0464G1472 Vigna mungo HOM05D004485 ORTHO05D005485 2.4e-168 596.7 724 54.4
PSO210G3171 Papaver somniferum HOM05D004485 ORTHO05D005485 3.5e-167 592.8 742 52.8
COL.COLO4_34764 Corchorus olitorius HOM05D004485 ORTHO05D005485 5.1e-166 589.0 725 56.0
Hma1.2p1_0571F.1_g180870 Hydrangea macrophylla HOM05D004485 ORTHO05D005485 5.1e-166 589.0 737 56.0
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 1.1e-165 587.8 739 52.0
Gorai.010G076200 Gossypium raimondii HOM05D004485 ORTHO05D005485 4.3e-165 585.9 756 53.0
ECA236G0540 Erigeron canadensis HOM05D004485 ORTHO05D005485 7.3e-165 585.1 448 73.0
CAN.G1642.10 Capsicum annuum HOM05D004485 ORTHO05D005485 3.6e-164 582.8 727 54.5
AUR62021427 Chenopodium quinoa HOM05D004485 ORTHO05D005485 6.2e-164 582.0 746 51.3
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 3.1e-163 579.7 737 54.0
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 8.9e-163 578.2 475 68.8
Nitab4.5_0000566g0170 Nicotiana tabacum HOM05D004485 ORTHO05D005485 2.2e-161 573.5 750 53.1
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 8.4e-161 571.6 739 52.1
Zm00001eb153530 Zea mays HOM05D004485 ORTHO05D005485 2.1e-159 567.0 721 51.9
Zm00001eb371090 Zea mays HOM05D004485 ORTHO05D005485 2.3e-158 563.5 712 53.1
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 1.5e-157 560.8 735 52.2
arahy.Tifrunner.gnm1.ann1.N3ID59 Arachis hypogaea HOM05D004485 ORTHO05D005485 1.6e-156 557.4 729 53.1
Rhsim05G0040900 Rhododendron simsii HOM05D004485 ORTHO05D005485 2.1e-156 557.0 719 53.3
vmacro10859 Vaccinium macrocarpon HOM05D004485 ORTHO05D005485 3.6e-156 556.2 647 57.7
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 6.2e-156 555.4 736 52.7
RcHm_v2.0_Chr2g0091661 Rosa chinensis HOM05D004485 ORTHO05D005485 8.1e-156 555.1 738 52.8
ATR0705G155 Amborella trichopoda HOM05D004485 ORTHO05D005485 8.9e-155 551.6 722 51.4
arahy.Tifrunner.gnm1.ann1.8771PM Arachis hypogaea HOM05D004485 ORTHO05D005485 2.4e-152 543.5 761 50.7
Medtr6g088595 Medicago truncatula HOM05D004485 ORTHO05D005485 9.3e-152 541.6 732 52.6
FAN26G2333 Fragaria x ananassa HOM05D004485 ORTHO05D005485 6.0e-151 538.9 735 51.8
unitig_899.g15433 Utricularia gibba HOM05D004485 ORTHO05D005485 6.0e-151 538.9 714 51.3
FAN26G0748 Fragaria x ananassa HOM05D004485 ORTHO05D005485 2.3e-150 537.0 735 51.7
FvH4_1g05970 Fragaria vesca HOM05D004485 ORTHO05D005485 6.6e-150 535.4 735 51.7
Lsat_1_v5_gn_8_96840 Lactuca sativa HOM05D004485 ORTHO05D005485 2.5e-149 533.5 810 48.0
SGA_v2.0_scaffold129G34191 Striga asiatica HOM05D004485 ORTHO05D005485 1.8e-147 527.3 380 76.8
CDE04G3494 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 6.9e-147 525.4 702 50.1
FAN28G2435 Fragaria x ananassa HOM05D004485 ORTHO05D005485 9.0e-147 525.0 742 50.9
Peaxi162Scf00665g00331 Petunia axillaris HOM05D004485 ORTHO05D005485 9.9e-146 521.5 773 49.2
HanXRQChr12g0358161 Helianthus annuus HOM05D004485 ORTHO05D005485 4.6e-143 512.7 765 48.6
MBI01_g35400_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 6.7e-142 508.8 807 48.3
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 3.1e-139 500.0 734 47.0
FAN23G2550 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.6e-135 487.6 742 48.8
arahy.Tifrunner.gnm1.ann1.TC5UZA Arachis hypogaea HOM05D004485 ORTHO05D005485 6.5e-129 465.7 734 46.2
arahy.Tifrunner.gnm1.ann1.96JC9B Arachis hypogaea HOM05D004485 ORTHO05D005485 2.7e-127 460.3 735 46.9
AUR62010900 Chenopodium quinoa HOM05D004485 ORTHO05D005485 7.6e-122 442.2 682 46.6
Ah.14g083300 Amaranthus hybridus HOM05D004485 ORTHO05D005485 2.3e-118 430.6 403 63.5
Cc06_g10330 Coffea canephora HOM05D004485 ORTHO05D005485 1.1e-109 401.7 549 51.9
Hund29368 Selenicereus undatus HOM05D004485 ORTHO05D005485 2.6e-101 374.0 516 50.4
AagrBONN_evm.TU.Sc2ySwM_368.430 Anthoceros agrestis HOM05D004485 ORTHO05D005485 7.4e-101 372.5 742 40.2
Hund29369 Selenicereus undatus HOM05D004485 ORTHO05D005485 2.2e-100 370.9 516 50.2
Oeu064192.1 Olea europaea HOM05D004485 ORTHO05D005485 3.7e-84 317.0 236 75.0
Actinidia39785 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.6e-82 311.6 225 75.6
CDE02G0772 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 6.5e-81 306.2 231 73.2
Hund28808 Selenicereus undatus HOM05D004485 ORTHO05D005485 8.6e-73 279.3 205 75.1
Hund28810 Selenicereus undatus HOM05D004485 ORTHO05D005485 8.6e-73 279.3 205 75.1
SMO356G0242 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 2.5e-72 277.7 474 42.4
MBI07_g30871_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 1.2e-71 275.4 224 68.8
Oeu064194.1 Olea europaea HOM05D004485 ORTHO05D005485 2.0e-66 258.1 444 46.4
Cc06_g10340 Coffea canephora HOM05D004485 ORTHO05D005485 2.7e-66 257.7 179 76.5
Actinidia39786 Actinidia chinensis HOM05D004485 ORTHO05D005485 4.7e-63 246.9 453 44.2
Potri.006G164350 Populus trichocarpa HOM05D004485 ORTHO05D005485 4.0e-62 243.8 172 76.7
CBR_g39203 Chara braunii HOM05D004485 ORTHO05D005485 4.1e-59 233.8 567 35.4
DCAR_012046 Daucus carota HOM05D004485 ORTHO05D005485 3.2e-51 207.6 401 41.4
Cpa.g.sc40.63 Carica papaya HOM05D004485 ORTHO05D005485 7.8e-50 203.0 462 41.3
Cpa.g.sc40.65 Carica papaya HOM05D004485 ORTHO05D005485 4.4e-45 187.2 131 76.3
BcaC06g36663 Brassica carinata HOM05D004485 ORTHO05D005485 3.8e-44 184.1 243 51.9
SMO140G0037 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 2.4e-43 181.4 529 33.1
SHI02696 Sapria himalayana HOM05D004485 ORTHO05D005485 3.5e-42 177.6 427 38.9
arahy.Tifrunner.gnm1.ann1.SL9UG3 Arachis hypogaea HOM05D004485 ORTHO05D005485 4.0e-38 164.1 281 44.5
Sc08g0007940 Simmondsia chinensis HOM05D004485 ORTHO05D005485 4.9e-36 157.1 201 53.7
A07p00710 Brassica napus HOM05D004485 ORTHO05D005485 7.8e-34 149.8 297 42.8
Cpa.g.sc40.64 Carica papaya HOM05D004485 ORTHO05D005485 6.2e-31 140.2 86 86.0
C07p01440 Brassica napus HOM05D004485 ORTHO05D005485 6.0e-26 123.6 450 34.4
SalBow3G4580 Salvia bowleyana HOM05D004485 ORTHO05D005485 6.7e-25 120.2 93 65.6
Rhsim05G0040800 Rhododendron simsii HOM05D000602 ORTHO05D001147 1.1e-24 119.4 204 47.5
Gohir.D05G357440 Gossypium hirsutum HOM05D004485 ORTHO05D005485 9.0e-22 109.8 75 78.7
Gohir.D05G357788 Gossypium hirsutum HOM05D004485 ORTHO05D005485 9.0e-22 109.8 75 78.7
Gohir.D04G126400 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.2e-21 109.4 70 80.0
Gorai.003G091600 Gossypium raimondii HOM05D004485 ORTHO05D005485 4.5e-21 107.5 72 77.8
PGR102G1041 Punica granatum HOM05D004485 ORTHO05D005485 5.8e-21 107.1 87 70.1
Gohir.D01G081701 Gossypium hirsutum HOM05D004485 ORTHO05D005485 3.2e-19 101.3 70 78.6
CARHR266410 Cardamine hirsuta HOM05D004485 ORTHO05D005485 1.1e-16 92.8 128 54.7
A07p00700 Brassica napus HOM05D004485 ORTHO05D040257 2.8e-15 88.2 89 67.4
BraA07t27869Z Brassica rapa HOM05D004485 ORTHO05D040257 1.8e-14 85.5 89 66.3
HPP92_005577 Vanilla planifolia HOM05D004485 ORTHO05D005485 2.6e-13 81.6 65 64.6
Cre12.g517500 Chlamydomonas reinhardtii HOM05D004485 ORTHO05D005485 3.4e-13 81.3 453 24.7
PRCOL_00000913 Prasinoderma coloniale HOM05D004485 ORTHO05D005485 1.2e-10 72.8 469 26.0
BraA07t27870Z Brassica rapa HOM05D004485 ORTHO05D005485 1.3e-09 69.3 64 71.9
Oeu014377.2 Olea europaea HOM05D004897 ORTHO05D005928 3.9e-09 67.8 359 27.3
Eucgr.B00942 Eucalyptus grandis HOM05D004897 ORTHO05D005928 8.7e-09 66.6 369 26.8
Ciclev10007731m.g Citrus clementina HOM05D004897 ORTHO05D005928 2.5e-08 65.1 346 26.9
PGSC0003DMG400005743 Solanum tuberosum HOM05D004897 ORTHO05D005928 2.5e-08 65.1 336 25.0
CAN.G1129.49 Capsicum annuum HOM05D004897 ORTHO05D005928 4.3e-08 64.3 357 24.6
ATR0693G380 Amborella trichopoda HOM05D004485 ORTHO05D005485 7.4e-08 63.5 79 46.8
HanXRQChr10g0316161 Helianthus annuus HOM05D004485 ORTHO05D005485 7.4e-08 63.5 50 74.0
Actinidia18901 Actinidia chinensis HOM05D004897 ORTHO05D005928 1.3e-07 62.8 353 25.2
CDE02G3418 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 1.3e-07 62.8 313 29.1
DCAR_014009 Daucus carota HOM05D004897 ORTHO05D005928 1.3e-07 62.8 354 21.5
Lsat_1_v5_gn_8_144040 Lactuca sativa HOM05D004897 ORTHO05D005928 3.7e-07 61.2 343 24.5
Medtr8g107060 Medicago truncatula HOM05D004897 ORTHO05D005928 4.8e-07 60.8 369 24.4
Sabra15G0057300 Salix brachista HOM05D004897 ORTHO05D005928 4.8e-07 60.8 342 25.4
MD06G1230800 Malus domestica HOM05D004897 ORTHO05D005928 6.3e-07 60.5 364 24.5
Lj4g0010445 Lotus japonicus HOM05D004897 ORTHO05D005928 8.2e-07 60.1 349 22.9
SGA_v2.0_scaffold168G38498 Striga asiatica HOM05D004897 ORTHO05D005928 8.2e-07 60.1 348 25.9
FAN18G0124 Fragaria x ananassa HOM05D004897 ORTHO05D005928 1.1e-06 59.7 350 26.0
SalBow1G4576 Salvia bowleyana HOM05D004897 ORTHO05D005928 1.1e-06 59.7 355 25.9
MD14G1235400 Malus domestica HOM05D004897 ORTHO05D005928 1.8e-06 58.9 366 24.9
A08p30510 Brassica napus HOM05D004897 ORTHO05D005928 3.1e-06 58.2 358 25.7
FAN08G3076 Fragaria x ananassa HOM05D004897 ORTHO05D005928 3.1e-06 58.2 350 25.7
Thecc.03G053700 Theobroma cacao HOM05D004897 ORTHO05D005928 4.1e-06 57.8 366 24.3
Phvul.002G329100 Phaseolus vulgaris HOM05D004897 ORTHO05D005928 9.0e-06 56.6 366 24.3
TWI81G0456 Tripterygium wilfordii HOM05D004897 ORTHO05D005928 9.0e-06 56.6 369 24.7


User provided reference genes

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