Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p12120 Brassica napus HOM05D004757 ORTHO05D005743 1.2e-77 293.1 148 100.0
BcaB07g31638 Brassica carinata HOM05D004757 ORTHO05D005743 2.5e-67 258.8 135 97.8
BraA09t36856Z Brassica rapa HOM05D004757 ORTHO05D005743 7.2e-67 257.3 133 98.5
BcaC04g22879 Brassica carinata HOM05D004757 ORTHO05D005743 2.0e-64 249.2 133 95.5
BolC9t54334H Brassica oleracea HOM05D004757 ORTHO05D005743 2.6e-64 248.8 143 91.6
AL3G53010 Arabidopsis lyrata HOM05D004757 ORTHO05D005743 2.8e-63 245.4 133 93.2
AT2G18910 Arabidopsis thaliana HOM05D004757 ORTHO05D005743 1.4e-62 243.0 133 91.7
C09p14310 Brassica napus HOM05D004757 ORTHO05D005743 2.4e-62 242.3 143 88.8
A07p01750 Brassica napus HOM05D004757 ORTHO05D005743 1.2e-61 240.0 133 91.0
C07p03670 Brassica napus HOM05D004757 ORTHO05D005743 1.2e-61 240.0 133 91.0
BolC7t40764H Brassica oleracea HOM05D004757 ORTHO05D005743 1.2e-61 240.0 133 91.0
Carub.0003s3315 Capsella rubella HOM05D004757 ORTHO05D005743 5.9e-61 237.7 133 89.5
BolC3t18202H Brassica oleracea HOM05D004757 ORTHO05D005743 6.5e-60 234.2 134 89.6
CARHR109470 Cardamine hirsuta HOM05D004757 ORTHO05D005743 1.5e-59 233.0 133 88.7
C03p59380 Brassica napus HOM05D004757 ORTHO05D005743 3.2e-59 231.9 134 88.8
BcaB03g16684 Brassica carinata HOM05D004757 ORTHO05D005743 1.6e-58 229.6 133 88.0
BraA06t26238Z Brassica rapa HOM05D004757 ORTHO05D005743 2.3e-57 225.7 134 88.1
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 6.7e-57 224.2 121 90.9
Sp3g32380 Schrenkiella parvula HOM05D004757 ORTHO05D005743 1.2e-56 223.4 133 86.5
A06p33080 Brassica napus HOM05D004757 ORTHO05D005743 2.0e-56 222.6 131 87.0
THA.LOC104803943 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 3.3e-56 221.9 133 82.7
Aa31LG8G16000 Aethionema arabicum HOM05D004757 ORTHO05D005743 4.4e-56 221.5 134 84.3
Thhalv10022848m.g Eutrema salsugineum HOM05D004757 ORTHO05D005743 9.1e-54 213.8 135 83.7
BcaC06g36489 Brassica carinata HOM05D004757 ORTHO05D005743 2.0e-53 212.6 112 92.9
THA.LOC104803488 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 5.4e-46 188.0 136 72.8
Atru.chr7.878 Acer truncatum HOM05D004757 ORTHO05D005743 1.0e-44 183.7 135 71.1
Cpa.g.sc95.44 Carica papaya HOM05D004757 ORTHO05D005743 1.4e-41 173.3 135 68.1
Manes.06G022800 Manihot esculenta HOM05D004757 ORTHO05D005743 1.2e-40 170.2 135 66.7
Cfa013398 Carpinus fangiana HOM05D004757 ORTHO05D005743 2.0e-40 169.5 135 68.9
Duzib150G0244 Durio zibethinus HOM05D004757 ORTHO05D005743 2.6e-40 169.1 141 63.8
Potri.006G166400 Populus trichocarpa HOM05D004757 ORTHO05D005743 2.6e-40 169.1 147 63.9
Gohir.A08G083700 Gossypium hirsutum HOM05D004757 ORTHO05D005743 2.2e-39 166.0 140 63.6
Manes.14G157383 Manihot esculenta HOM05D004757 ORTHO05D005743 2.8e-39 165.6 136 66.9
Haze_21940 Corylus avellana HOM05D004757 ORTHO05D005743 6.3e-39 164.5 115 74.8
Gohir.D08G093400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 1.4e-38 163.3 140 62.9
ClCG06G013460 Citrullus lanatus HOM05D004757 ORTHO05D005743 3.1e-38 162.2 140 65.7
Duzib170G0153 Durio zibethinus HOM05D004757 ORTHO05D005743 4.1e-38 161.8 141 62.4
CiPaw.07G193700 Carya illinoinensis HOM05D004757 ORTHO05D005743 9.2e-38 160.6 135 66.7
Thecc.09G175100 Theobroma cacao HOM05D004757 ORTHO05D005743 9.2e-38 160.6 142 62.0
TWI34G1741 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 1.2e-37 160.2 139 65.5
Potri.018G090900 Populus trichocarpa HOM05D004757 ORTHO05D005743 2.7e-37 159.1 144 62.5
CsaV3_1G031720 Cucumis sativus L. HOM05D004757 ORTHO05D005743 4.5e-37 158.3 140 64.3
Lj4g0011233 Lotus japonicus HOM05D004757 ORTHO05D005743 7.8e-37 157.5 137 65.7
Duzib168G0914 Durio zibethinus HOM05D004757 ORTHO05D005743 1.0e-36 157.1 139 61.2
Gorai.004G099000 Gossypium raimondii HOM05D004757 ORTHO05D005743 3.8e-36 155.2 120 66.7
Medtr4g127810 Medicago truncatula HOM05D004757 ORTHO05D005743 1.5e-35 153.3 140 61.4
TWI63G0987 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 1.5e-35 153.3 137 65.7
CiPaw.08G035200 Carya illinoinensis HOM05D004757 ORTHO05D005743 5.6e-35 151.4 142 59.2
Sed0015670 Sechium edule HOM05D004757 ORTHO05D005743 1.2e-34 150.2 138 63.8
MELO3C017451.2 Cucumis melo HOM05D004757 ORTHO05D005743 3.6e-34 148.7 120 67.5
Glyma.13G097500 Glycine max HOM05D004757 ORTHO05D005743 3.6e-34 148.7 137 61.3
Phvul.003G144000 Phaseolus vulgaris HOM05D004757 ORTHO05D005743 3.6e-34 148.7 137 60.6
Glyma.17G062100 Glycine max HOM05D004757 ORTHO05D005743 6.1e-34 147.9 140 60.0
Prupe.1G082700 Prunus persica HOM05D004757 ORTHO05D005743 3.0e-33 145.6 136 62.5
Ciclev10009829m.g Citrus clementina HOM05D004757 ORTHO05D005743 4.0e-33 145.2 121 64.5
Gorai.004G027500 Gossypium raimondii HOM05D004757 ORTHO05D005743 5.2e-33 144.8 146 56.8
VMungo1215G0044 Vigna mungo HOM05D004757 ORTHO05D005743 5.2e-33 144.8 127 63.0
Ca_21237_v3 Cicer arietinum L. HOM05D004757 ORTHO05D005743 1.2e-32 143.7 118 66.9
MD16G1255800 Malus domestica HOM05D004757 ORTHO05D005743 1.5e-32 143.3 147 58.5
Actinidia01305 Actinidia chinensis HOM05D004757 ORTHO05D005743 2.6e-32 142.5 136 55.1
Gohir.A08G019400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 3.4e-32 142.1 144 56.9
Sed0003925 Sechium edule HOM05D004757 ORTHO05D005743 3.4e-32 142.1 140 60.0
TAR626G1857 Trochodendron aralioides HOM05D004757 ORTHO05D005743 5.8e-32 141.4 132 59.8
Lsat_1_v5_gn_7_54961 Lactuca sativa HOM05D004757 ORTHO05D005743 7.5e-32 141.0 136 58.1
QL02p098330 Quercus lobata HOM05D004757 ORTHO05D005743 7.5e-32 141.0 119 68.1
TPR.G5446 Trifolium pratense HOM05D004757 ORTHO05D005743 7.5e-32 141.0 144 56.9
FAN17G1906 Fragaria x ananassa HOM05D004757 ORTHO05D005743 2.2e-31 139.4 139 61.2
Gohir.D08G030000 Gossypium hirsutum HOM05D004757 ORTHO05D005743 2.2e-31 139.4 146 55.5
Psat4g012760 Pisum sativum HOM05D004757 ORTHO05D005743 6.4e-31 137.9 144 56.2
FvH4_4g07900 Fragaria vesca HOM05D004757 ORTHO05D005743 8.3e-31 137.5 144 59.0
unitig_21.g20652 Utricularia gibba HOM05D004757 ORTHO05D005743 1.1e-30 137.1 143 52.4
Hma1.2p1_2317F.1_g319740 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 1.9e-30 136.3 135 58.5
Lalb_Chr13g0300141 Lupinus albus HOM05D004757 ORTHO05D005743 1.9e-30 136.3 126 61.1
Dinv19553 Davidia involucrata HOM05D004757 ORTHO05D005743 2.4e-30 136.0 129 58.1
HanXRQChr09g0244371 Helianthus annuus HOM05D004757 ORTHO05D005743 2.4e-30 136.0 113 62.8
RcHm_v2.0_Chr4g0401201 Rosa chinensis HOM05D004757 ORTHO05D005743 3.2e-30 135.6 143 58.0
Actinidia19844 Actinidia chinensis HOM05D004757 ORTHO05D005743 7.0e-30 134.4 133 56.4
Lalb_Chr12g0199461 Lupinus albus HOM05D004757 ORTHO05D005743 9.2e-30 134.0 138 54.3
HanXRQChr09g0254201 Helianthus annuus HOM05D004757 ORTHO05D005743 1.2e-29 133.7 119 63.0
Hma1.2p1_0935F.1_g238550 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 2.7e-29 132.5 134 58.2
PGR142G2781 Punica granatum HOM05D004757 ORTHO05D005743 7.8e-29 131.0 138 52.9
PGR044G0017 Punica granatum HOM05D004757 ORTHO05D005743 1.0e-28 130.6 112 61.6
Migut.K00229 Erythranthe guttata HOM05D004757 ORTHO05D005743 1.3e-28 130.2 133 51.9
PSO170G5353 Papaver somniferum HOM05D004757 ORTHO05D005743 2.3e-28 129.4 184 46.7
Hma1.2p1_1303F.1_g274440 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 3.9e-28 128.6 157 49.7
MD13G1249500 Malus domestica HOM05D004757 ORTHO05D005743 3.9e-28 128.6 144 56.2
Peaxi162Scf01558g00012 Petunia axillaris HOM05D004757 ORTHO05D005743 3.9e-28 128.6 154 50.6
Sc14g0001290 Simmondsia chinensis HOM05D004757 ORTHO05D005743 5.0e-28 128.3 113 58.4
Eucgr.C00145 Eucalyptus grandis HOM05D004757 ORTHO05D005743 6.6e-28 127.9 115 60.9
PSO063G6152 Papaver somniferum HOM05D004757 ORTHO05D005743 6.6e-28 127.9 183 45.9
Sabra06G0128000 Salix brachista HOM05D004757 ORTHO05D005743 6.6e-28 127.9 159 49.7
Migut.J01503 Erythranthe guttata HOM05D004757 ORTHO05D005743 8.6e-28 127.5 145 50.3
ECA240G0762 Erigeron canadensis HOM05D004757 ORTHO05D005743 1.1e-27 127.1 135 52.6
FAN12G2780 Fragaria x ananassa HOM05D004757 ORTHO05D005743 7.3e-27 124.4 167 50.9
GSVIVG01035530001 Vitis vinifera HOM05D004757 ORTHO05D005743 7.3e-27 124.4 137 54.0
ECA234G2687 Erigeron canadensis HOM05D004757 ORTHO05D005743 1.2e-26 123.6 143 51.0
CANSAT11G1025 Cannabis sativa HOM05D004757 ORTHO05D005743 1.6e-26 123.2 144 52.8
FAN07G0988 Fragaria x ananassa HOM05D004757 ORTHO05D005743 2.8e-26 122.5 167 50.3
FAN22G2108 Fragaria x ananassa HOM05D004757 ORTHO05D005743 2.8e-26 122.5 167 50.3
Sabra18G0078100 Salix brachista HOM05D004757 ORTHO05D005743 2.8e-26 122.5 165 47.9
Hund09034 Selenicereus undatus HOM05D004757 ORTHO05D005743 3.6e-26 122.1 124 52.4
TAR383G0800 Trochodendron aralioides HOM05D004757 ORTHO05D005743 6.2e-26 121.3 119 58.0
MBI16_g31788_MAGBIO Magnolia biondii HOM05D004757 ORTHO05D005743 1.4e-25 120.2 146 47.9
Nn2g12725 Nelumbo nucifera HOM05D004757 ORTHO05D005743 2.3e-25 119.4 134 53.0
Eucgr.L02640 Eucalyptus grandis HOM05D004757 ORTHO05D005743 3.1e-25 119.0 118 53.4
Lsat_1_v5_gn_8_68041 Lactuca sativa HOM05D004757 ORTHO05D005743 3.1e-25 119.0 112 55.4
Ah.14g083740 Amaranthus hybridus HOM05D004757 ORTHO05D005743 5.2e-25 118.2 134 50.7
EL10Ac8g18296 Beta vulgaris HOM05D004757 ORTHO05D005743 5.2e-25 118.2 138 48.6
SGA_v2.0_scaffold66G22433 Striga asiatica HOM05D004757 ORTHO05D005743 5.2e-25 118.2 133 51.1
CSS0015413 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 8.9e-25 117.5 124 51.6
Rhsim01G0003200 Rhododendron simsii HOM05D004757 ORTHO05D005743 8.9e-25 117.5 129 54.3
Aqoxy7G02958 Aquilegia oxysepala HOM05D004757 ORTHO05D005743 1.5e-24 116.7 131 51.1
CDE04G2108 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 1.5e-24 116.7 129 51.2
SalBow6G1691 Salvia bowleyana HOM05D004757 ORTHO05D005743 2.0e-24 116.3 145 51.0
TAR636G1688 Trochodendron aralioides HOM05D004757 ORTHO05D005743 2.6e-24 115.9 112 57.1
Nitab4.5_0010128g0010 Nicotiana tabacum HOM05D004757 ORTHO05D005743 4.4e-24 115.2 152 48.7
Solyc07g006960.3 Solanum lycopersicum HOM05D004757 ORTHO05D005743 4.4e-24 115.2 137 50.4
Cc06_g12990 Coffea canephora HOM05D004757 ORTHO05D005743 5.8e-24 114.8 162 47.5
CDE02G3269 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 9.8e-24 114.0 129 50.4
Oeu025209.1 Olea europaea HOM05D004757 ORTHO05D005743 1.3e-23 113.6 128 51.6
Oeu025694.3 Olea europaea HOM05D004757 ORTHO05D005743 1.7e-23 113.2 121 53.7
MSTRG.19719 Avicennia marina HOM05D004757 ORTHO05D005743 2.9e-23 112.5 149 46.3
CSS0012735 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 3.7e-23 112.1 132 52.3
ATR0580G064 Amborella trichopoda HOM05D004757 ORTHO05D005743 6.4e-23 111.3 123 50.4
PGSC0003DMG400018757 Solanum tuberosum HOM05D004757 ORTHO05D005743 8.3e-23 110.9 126 52.4
DCAR_020127 Daucus carota HOM05D004757 ORTHO05D005743 1.1e-22 110.5 130 50.8
Nn8g40409 Nelumbo nucifera HOM05D004757 ORTHO05D005743 1.9e-22 109.8 150 44.7
Sc08g0005260 Simmondsia chinensis HOM05D004757 ORTHO05D005743 1.9e-22 109.8 130 48.5
HanXRQChr05g0142021 Helianthus annuus HOM05D004757 ORTHO05D005743 2.4e-22 109.4 128 50.0
HPP92_015369 Vanilla planifolia HOM05D004757 ORTHO05D005743 5.4e-22 108.2 154 45.5
Lsat_1_v5_gn_5_85101 Lactuca sativa HOM05D004757 ORTHO05D005743 9.2e-22 107.5 140 46.4
ECA236G5014 Erigeron canadensis HOM05D004757 ORTHO05D005743 2.7e-21 105.9 124 48.4
Sopen07g003050 Solanum pennellii HOM05D004757 ORTHO05D005743 4.6e-21 105.1 134 49.3
MSTRG.6239 Avicennia marina HOM05D004757 ORTHO05D005743 6.0e-21 104.8 129 48.8
HanXRQChr10g0308501 Helianthus annuus HOM05D004757 ORTHO05D005743 2.3e-20 102.8 129 47.3
ATR0030G045 Amborella trichopoda HOM05D004757 ORTHO05D005743 3.9e-20 102.1 115 49.6
CAN.G1464.4 Capsicum annuum HOM05D004757 ORTHO05D005743 3.9e-20 102.1 106 52.8
vmacro13132 Vaccinium macrocarpon HOM05D004757 ORTHO05D005743 5.6e-19 98.2 170 41.2
Ah.09g229970 Amaranthus hybridus HOM05D004757 ORTHO05D005743 5.2e-17 91.7 150 42.7
Zm00001eb180540 Zea mays HOM05D004757 ORTHO05D005743 1.5e-16 90.1 183 36.1
Peaxi162Scf00200g00183 Petunia axillaris HOM05D004757 ORTHO05D005743 9.9e-16 87.4 92 55.4
Zm00001eb236700 Zea mays HOM05D004757 ORTHO05D005743 6.4e-15 84.7 174 36.8
Peaxi162Scf00200g01819 Petunia axillaris HOM05D004757 ORTHO05D005743 8.3e-15 84.3 88 51.1
Os02g0461900 Oryza sativa ssp. japonica HOM05D004757 ORTHO05D005743 4.1e-14 82.0 113 46.9
Dinv41223 Davidia involucrata HOM05D004757 ORTHO05D005743 5.4e-14 81.6 104 51.0
Zm00001eb420280 Zea mays HOM05D004757 ORTHO05D005743 5.4e-14 81.6 146 38.4
Zm00001eb087060 Zea mays HOM05D004757 ORTHO05D005743 7.8e-13 77.8 62 59.7
AUR62043442 Chenopodium quinoa HOM05D000216 ORTHO05D003518 1.7e-12 76.6 91 45.1
Peaxi162Scf00200g00182 Petunia axillaris HOM05D004757 ORTHO05D005743 2.8e-10 69.3 100 45.0
AUR62033229 Chenopodium quinoa HOM05D004757 ORTHO05D005743 5.8e-08 61.6 88 47.7
AUR62021312 Chenopodium quinoa HOM05D004757 ORTHO05D005743 9.9e-08 60.8 93 48.4
Peaxi162Scf00627g00011 Petunia axillaris HOM05D004757 ORTHO05D005743 8.4e-07 57.8 98 41.8


User provided reference genes

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