Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p11580 Brassica napus HOM05D004095 ORTHO05D003197 6.6e-157 557.4 289 100.0
BcaC04g22942 Brassica carinata HOM05D004095 ORTHO05D003197 4.9e-128 461.5 293 85.3
BraA09t36805Z Brassica rapa HOM05D004095 ORTHO05D003197 1.3e-125 453.4 291 84.9
C09p13630 Brassica napus HOM05D004095 ORTHO05D003197 8.1e-123 444.1 293 83.3
BcaB07g31703 Brassica carinata HOM05D004095 ORTHO05D003197 1.7e-72 276.9 328 54.9
Thhalv10022767m.g Eutrema salsugineum HOM05D004095 ORTHO05D003197 6.7e-69 265.0 352 51.7
C07p05400 Brassica napus HOM05D004095 ORTHO05D003197 1.3e-67 260.8 341 51.6
BolC7t40940H Brassica oleracea HOM05D004095 ORTHO05D003197 8.2e-67 258.1 341 51.3
BraA07t28113Z Brassica rapa HOM05D004095 ORTHO05D003197 3.5e-57 226.1 318 49.7
A07p03170 Brassica napus HOM05D004095 ORTHO05D003197 7.2e-55 218.4 317 49.2
BcaC06g36322 Brassica carinata HOM05D004095 ORTHO05D003197 3.0e-53 213.0 322 48.4
AT2G17787 Arabidopsis thaliana HOM05D004095 ORTHO05D003197 2.6e-52 209.9 336 47.0
Carub.0003s3193 Capsella rubella HOM05D004095 ORTHO05D003197 4.7e-46 189.1 378 41.5
CARHR108180 Cardamine hirsuta HOM05D004095 ORTHO05D003197 3.7e-43 179.5 304 45.7
AL3G50810 Arabidopsis lyrata HOM05D004095 ORTHO05D003197 5.0e-40 169.1 338 41.7
THA.LOC104804274 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 7.8e-33 145.2 348 36.2
THA.LOC104807504 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 7.8e-33 145.2 338 34.6
CARHR244340 Cardamine hirsuta HOM05D004095 ORTHO05D003197 2.3e-32 143.7 334 35.3
BraA03t15466Z Brassica rapa HOM05D004095 ORTHO05D003197 5.2e-29 132.5 382 33.8
A03p63990 Brassica napus HOM05D004095 ORTHO05D003197 2.9e-27 126.7 377 32.4
AT4G35940 Arabidopsis thaliana HOM05D004095 ORTHO05D003197 6.0e-25 119.0 380 30.0
BcaNung05051 Brassica carinata HOM05D004095 ORTHO05D003197 1.9e-23 114.0 373 31.6
AL7G15100 Arabidopsis lyrata HOM05D004095 ORTHO05D003197 9.5e-23 111.7 368 31.0
Carub.0007s0428 Capsella rubella HOM05D004095 ORTHO05D003197 3.1e-21 106.7 352 30.4
BraA01t00262Z Brassica rapa HOM05D004095 ORTHO05D003197 8.9e-21 105.1 348 32.5
BcaNung00778 Brassica carinata HOM05D004095 ORTHO05D003197 2.0e-20 104.0 351 33.0
C01p03060 Brassica napus HOM05D004095 ORTHO05D003197 5.8e-20 102.4 336 34.2
BolC7t46570H Brassica oleracea HOM05D004095 ORTHO05D003197 6.4e-19 99.0 394 29.2
Sp7g33720 Schrenkiella parvula HOM05D004095 ORTHO05D003197 1.4e-18 97.8 363 29.5
BolC1t00292H Brassica oleracea HOM05D004095 ORTHO05D003197 1.9e-18 97.4 333 32.7
COL.COLO4_22466 Corchorus olitorius HOM05D004095 ORTHO05D003197 9.2e-18 95.1 319 30.4
C07p61450 Brassica napus HOM05D004095 ORTHO05D003197 1.6e-17 94.4 371 29.6
Duzib147G0922 Durio zibethinus HOM05D004095 ORTHO05D003197 1.6e-17 94.4 346 30.6
Aa31LG6G12890 Aethionema arabicum HOM05D004095 ORTHO05D003197 6.0e-17 92.4 397 28.0
Thhalv10027062m.g Eutrema salsugineum HOM05D004095 ORTHO05D003197 1.3e-16 91.3 288 31.9
Duzib264G0091 Durio zibethinus HOM05D004095 ORTHO05D003197 7.3e-15 85.5 332 28.9
BolC9t54253H Brassica oleracea HOM05D004095 ORTHO05D003197 9.6e-15 85.1 41 100.0
A01p02760 Brassica napus HOM05D004095 ORTHO05D003197 1.6e-14 84.3 333 30.6
Gorai.003G007900 Gossypium raimondii HOM05D004095 ORTHO05D003197 8.1e-14 82.0 343 27.7
Duzib187G0006 Durio zibethinus HOM05D004095 ORTHO05D003197 1.8e-13 80.9 338 29.3
Cfa007004 Carpinus fangiana HOM05D004095 ORTHO05D003197 7.6e-12 75.5 335 26.9
Ciclev10025767m.g Citrus clementina HOM05D004095 ORTHO05D003197 7.6e-12 75.5 106 39.6
Gorai.008G208400 Gossypium raimondii HOM05D004095 ORTHO05D003197 2.4e-10 70.5 116 37.1
PSO675G0587 Papaver somniferum HOM05D004095 ORTHO05D003197 7.1e-10 68.9 322 30.1
Gohir.A02G172400 Gossypium hirsutum HOM05D004095 ORTHO05D003197 9.3e-10 68.6 337 26.1
Gohir.D03G007700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.6e-09 67.8 336 28.3
Atru.chr3.863_Atru.chr3.864 Acer truncatum HOM05D004095 ORTHO05D003197 2.7e-09 67.0 372 25.3
Gohir.D12G193466 Gossypium hirsutum HOM05D004095 ORTHO05D003197 3.5e-09 66.6 116 35.3
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 7.8e-09 65.5 313 28.1
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 1.7e-08 64.3 336 28.6
Nitab4.5_0006505g0050 Nicotiana tabacum HOM05D004095 ORTHO05D003197 3.9e-08 63.2 91 40.7
Eucgr.I02328 Eucalyptus grandis HOM05D004095 ORTHO05D003197 1.1e-07 61.6 337 26.4
PGR119G1825 Punica granatum HOM05D004095 ORTHO05D003197 1.1e-07 61.6 88 39.8
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 1.1e-07 61.6 310 28.4
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 3.3e-07 60.1 311 27.7
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 5.6e-07 59.3 336 27.7
TAR381G0731 Trochodendron aralioides HOM05D004095 ORTHO05D003197 5.6e-07 59.3 337 27.0
Haze_22667 Corylus avellana HOM05D004095 ORTHO05D003197 9.6e-07 58.5 158 29.7
CAN.G311.49 Capsicum annuum HOM05D004095 ORTHO05D003197 1.3e-06 58.2 308 27.6
Nn5g30782 Nelumbo nucifera HOM05D004095 ORTHO05D003197 2.1e-06 57.4 75 37.3
SalBow7G2790 Salvia bowleyana HOM05D004095 ORTHO05D003197 2.1e-06 57.4 77 40.3
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 3.6e-06 56.6 334 27.2
TAR376G0784 Trochodendron aralioides HOM05D004095 ORTHO05D003197 6.2e-06 55.8 325 28.3


User provided reference genes

Program Settings