Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p10150 Brassica napus HOM05D005052 ORTHO05D006226 1.2e-247 859.4 441 100.0
BraA09t36659Z Brassica rapa HOM05D005052 ORTHO05D006226 1.4e-243 845.9 441 98.2
BcaC04g23113 Brassica carinata HOM05D005052 ORTHO05D006226 6.6e-241 837.0 441 97.3
C09p12030 Brassica napus HOM05D005052 ORTHO05D006226 6.6e-241 837.0 441 97.3
BolC9t54093H Brassica oleracea HOM05D005052 ORTHO05D006226 2.8e-239 831.6 441 97.1
BcaB04g20124 Brassica carinata HOM05D005052 ORTHO05D006226 7.8e-234 813.5 442 95.5
Thhalv10004219m.g Eutrema salsugineum HOM05D005052 ORTHO05D006226 6.4e-220 767.3 449 89.3
AL8G45470 Arabidopsis lyrata HOM05D005052 ORTHO05D006226 6.0e-218 760.8 446 88.6
CARHR281630 Cardamine hirsuta HOM05D005052 ORTHO05D006226 7.3e-216 753.8 445 88.1
Sp2g30570 Schrenkiella parvula HOM05D005052 ORTHO05D006226 1.1e-214 750.0 448 87.5
Carub.0008s2837 Capsella rubella HOM05D005052 ORTHO05D006226 1.2e-213 746.5 443 87.4
AT5G66120 Arabidopsis thaliana HOM05D005052 ORTHO05D006226 1.5e-213 746.1 448 86.8
Aa31LG1G14600 Aethionema arabicum HOM05D005052 ORTHO05D006226 4.9e-196 688.0 446 80.9
THA.LOC104821339 Tarenaya hassleriana HOM05D005052 ORTHO05D006226 3.0e-193 678.7 437 80.1
Cpa.g.sc6.286 Carica papaya HOM05D005052 ORTHO05D006226 6.6e-193 677.6 449 78.6
QL06p051082 Quercus lobata HOM05D005052 ORTHO05D006226 8.7e-193 677.2 444 77.5
Cc07_g11060 Coffea canephora HOM05D005052 ORTHO05D006226 5.6e-192 674.5 437 78.0
CiPaw.07G061100 Carya illinoinensis HOM05D005052 ORTHO05D006226 8.1e-191 670.6 456 76.8
CsaV3_3G000670 Cucumis sativus L. HOM05D005052 ORTHO05D006226 3.1e-190 668.7 401 83.8
MELO3C013755.2 Cucumis melo HOM05D005052 ORTHO05D006226 9.0e-190 667.2 401 83.3
CiPaw.08G130500 Carya illinoinensis HOM05D005052 ORTHO05D006226 1.2e-189 666.8 424 78.8
arahy.Tifrunner.gnm1.ann1.1KVD1S Arachis hypogaea HOM05D005052 ORTHO05D006226 2.0e-189 666.0 439 78.1
arahy.Tifrunner.gnm1.ann1.PYN71E Arachis hypogaea HOM05D005052 ORTHO05D006226 2.0e-189 666.0 439 78.1
Actinidia22954 Actinidia chinensis HOM05D005052 ORTHO05D006226 4.5e-189 664.8 374 86.9
Nitab4.5_0008943g0020 Nicotiana tabacum HOM05D005052 ORTHO05D006226 4.5e-189 664.8 443 76.5
Nitab4.5_0001892g0080 Nicotiana tabacum HOM05D005052 ORTHO05D006226 9.9e-189 663.7 443 76.3
GSVIVG01018732001 Vitis vinifera HOM05D005052 ORTHO05D006226 1.3e-188 663.3 454 75.6
PGR102G0465 Punica granatum HOM05D005052 ORTHO05D006226 2.2e-188 662.5 443 76.7
Dinv40116 Davidia involucrata HOM05D005052 ORTHO05D006226 2.9e-188 662.1 459 74.1
HanXRQChr13g0424561 Helianthus annuus HOM05D005052 ORTHO05D006226 4.9e-188 661.4 455 76.0
VMungo1215G2918 Vigna mungo HOM05D005052 ORTHO05D006226 4.9e-188 661.4 403 82.1
ClCG10G000590 Citrullus lanatus HOM05D005052 ORTHO05D006226 6.4e-188 661.0 401 82.8
Ca_24920_v3 Cicer arietinum L. HOM05D005052 ORTHO05D006226 8.4e-188 660.6 452 77.0
Glyma.11G078700 Glycine max HOM05D005052 ORTHO05D006226 1.1e-187 660.2 390 84.4
TWI53G1960 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 1.1e-187 660.2 450 76.9
Lalb_Chr05g0212261 Lupinus albus HOM05D005052 ORTHO05D006226 1.4e-187 659.8 447 77.9
CAN.G1274.31 Capsicum annuum HOM05D005052 ORTHO05D006226 1.9e-187 659.4 442 76.2
DCAR_022909 Daucus carota HOM05D005052 ORTHO05D006226 2.4e-187 659.1 431 77.7
RcHm_v2.0_Chr2g0099021 Rosa chinensis HOM05D005052 ORTHO05D006226 2.4e-187 659.1 443 75.6
Gohir.D12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 5.4e-187 657.9 453 75.5
MD15G1242600 Malus domestica HOM05D005052 ORTHO05D006226 5.4e-187 657.9 437 76.2
Eucgr.J02467 Eucalyptus grandis HOM05D005052 ORTHO05D006226 7.1e-187 657.5 454 75.1
FAN19G0738 Fragaria x ananassa HOM05D005052 ORTHO05D006226 7.1e-187 657.5 439 75.9
FAN28G0876 Fragaria x ananassa HOM05D005052 ORTHO05D006226 1.2e-186 656.8 440 75.5
Lalb_Chr09g0321611 Lupinus albus HOM05D005052 ORTHO05D006226 1.2e-186 656.8 435 78.4
Sed0003793 Sechium edule HOM05D005052 ORTHO05D006226 1.2e-186 656.8 429 77.6
CANSAT25G2560 Cannabis sativa HOM05D005052 ORTHO05D006226 2.7e-186 655.6 405 81.2
FvH4_1g11430 Fragaria vesca HOM05D005052 ORTHO05D006226 3.5e-186 655.2 440 75.5
Atru.chr3.855 Acer truncatum HOM05D005052 ORTHO05D006226 4.6e-186 654.8 404 80.7
ECA240G3065 Erigeron canadensis HOM05D005052 ORTHO05D006226 6.0e-186 654.4 411 80.0
Oeu048477.1 Olea europaea HOM05D005052 ORTHO05D006226 6.0e-186 654.4 381 85.0
Prupe.7G171600 Prunus persica HOM05D005052 ORTHO05D006226 6.0e-186 654.4 390 82.6
Sopen02g028370 Solanum pennellii HOM05D005052 ORTHO05D006226 6.0e-186 654.4 446 76.0
COL.COLO4_22462 Corchorus olitorius HOM05D005052 ORTHO05D006226 7.9e-186 654.1 446 76.2
Peaxi162Scf00328g00523 Petunia axillaris HOM05D005052 ORTHO05D006226 7.9e-186 654.1 426 78.6
TPR.G10542 Trifolium pratense HOM05D005052 ORTHO05D006226 7.9e-186 654.1 445 76.4
Gohir.A12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 1.3e-185 653.3 453 75.1
FAN23G2381 Fragaria x ananassa HOM05D005052 ORTHO05D006226 1.8e-185 652.9 439 75.6
Psat2g153160 Pisum sativum HOM05D005052 ORTHO05D006226 1.8e-185 652.9 448 76.6
Cfa007001 Carpinus fangiana HOM05D005052 ORTHO05D006226 3.0e-185 652.1 447 75.2
Gorai.008G062200 Gossypium raimondii HOM05D005052 ORTHO05D006226 5.1e-185 651.4 454 75.1
Sabra05G0090900 Salix brachista HOM05D005052 ORTHO05D006226 6.7e-185 651.0 448 75.9
Solyc02g083590.3 Solanum lycopersicum HOM05D005052 ORTHO05D006226 6.7e-185 651.0 446 75.8
SGA_v2.0_scaffold94G28549 Striga asiatica HOM05D005052 ORTHO05D006226 6.7e-185 651.0 451 75.6
PSO541G6199 Papaver somniferum HOM05D005052 ORTHO05D006226 1.9e-184 649.4 408 80.6
Phvul.002G106700 Phaseolus vulgaris HOM05D005052 ORTHO05D006226 1.9e-184 649.4 415 79.3
Glyma.01G164300 Glycine max HOM05D005052 ORTHO05D006226 2.5e-184 649.0 442 76.5
Sc03g0003700 Simmondsia chinensis HOM05D005052 ORTHO05D006226 2.5e-184 649.0 447 75.8
Lj4A222T51 Lonicera japonica HOM05D005052 ORTHO05D006226 5.6e-184 647.9 468 73.3
Lj2g0011110 Lotus japonicus HOM05D005052 ORTHO05D006226 5.6e-184 647.9 436 76.8
vmacro18426 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 7.4e-184 647.5 413 78.2
Thecc.01G014600 Theobroma cacao HOM05D005052 ORTHO05D006226 1.6e-183 646.4 451 74.9
Haze_03731 Corylus avellana HOM05D005052 ORTHO05D006226 2.1e-183 646.0 458 72.3
Medtr5g022580 Medicago truncatula HOM05D005052 ORTHO05D006226 2.1e-183 646.0 442 76.7
SalBow3G4284 Salvia bowleyana HOM05D005052 ORTHO05D006226 2.1e-183 646.0 447 74.7
TAR381G1626 Trochodendron aralioides HOM05D005052 ORTHO05D006226 2.1e-183 646.0 389 82.8
AUR62003338 Chenopodium quinoa HOM05D005052 ORTHO05D006226 4.8e-183 644.8 449 74.4
Potri.005G110900 Populus trichocarpa HOM05D005052 ORTHO05D006226 4.8e-183 644.8 448 75.7
TWI09G1579 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 4.8e-183 644.8 453 74.0
Nn5g28565 Nelumbo nucifera HOM05D005052 ORTHO05D006226 6.2e-183 644.4 452 74.8
Migut.C00533 Erythranthe guttata HOM05D005052 ORTHO05D006226 8.1e-183 644.0 436 75.0
Nn1g06262 Nelumbo nucifera HOM05D005052 ORTHO05D006226 8.1e-183 644.0 389 81.7
PSO675G6089 Papaver somniferum HOM05D005052 ORTHO05D006226 8.1e-183 644.0 408 80.1
PGSC0003DMG400003582 Solanum tuberosum HOM05D005052 ORTHO05D006226 1.4e-182 643.3 437 76.0
Rhsim08G0032100 Rhododendron simsii HOM05D005052 ORTHO05D006226 4.0e-182 641.7 373 82.8
FAN26G3360 Fragaria x ananassa HOM05D005052 ORTHO05D006226 6.9e-182 641.0 453 73.1
Duzib147G0491 Durio zibethinus HOM05D005052 ORTHO05D006226 1.2e-181 640.2 451 74.1
MSTRG.2728 Avicennia marina HOM05D005052 ORTHO05D006226 1.5e-181 639.8 446 74.0
Hund16503 Selenicereus undatus HOM05D005052 ORTHO05D006226 4.5e-181 638.3 454 73.6
AUR62029500 Chenopodium quinoa HOM05D005052 ORTHO05D006226 3.8e-180 635.2 455 73.2
Aqoxy4G02022 Aquilegia oxysepala HOM05D005052 ORTHO05D006226 8.4e-180 634.0 368 84.5
Os09g0539100 Oryza sativa ssp. japonica HOM05D005052 ORTHO05D006226 8.4e-180 634.0 381 82.4
Gohir.D11G180500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 4.2e-179 631.7 366 85.5
Gorai.007G192400 Gossypium raimondii HOM05D005052 ORTHO05D006226 4.2e-179 631.7 449 73.5
Zm00001eb103800 Zea mays HOM05D005052 ORTHO05D006226 3.5e-178 628.6 446 73.8
MBI05_g23388_MAGBIO Magnolia biondii HOM05D005052 ORTHO05D006226 7.9e-178 627.5 451 71.0
ATR0712G043 Amborella trichopoda HOM05D005052 ORTHO05D006226 1.0e-177 627.1 447 72.0
vmacro22193 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 1.3e-177 626.7 500 66.0
Gohir.A11G173500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 6.9e-174 614.4 369 82.4
Pp3c13_24150 Physcomitrium patens HOM05D005052 ORTHO05D006226 1.3e-172 610.1 385 77.4
HPP92_025914 Vanilla planifolia HOM05D005052 ORTHO05D006226 1.0e-169 600.5 441 69.4
HPP92_025909 Vanilla planifolia HOM05D005052 ORTHO05D006226 2.3e-169 599.4 442 69.5
CSS0012363 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 4.1e-166 588.6 328 87.8
Mapoly0031s0094 Marchantia polymorpha HOM05D005052 ORTHO05D006226 3.4e-165 585.5 385 73.8
AagrBONN_evm.TU.Sc2ySwM_340.387 Anthoceros agrestis HOM05D005052 ORTHO05D006226 2.5e-163 579.3 385 74.3
Ciclev10025711m.g Citrus clementina HOM05D005052 ORTHO05D006226 2.7e-162 575.9 443 70.2
SMO228G0049 Selaginella moellendorffii HOM05D005052 ORTHO05D006226 2.0e-160 569.7 364 75.5
DCAR_004732 Daucus carota HOM05D005052 ORTHO05D006226 5.0e-156 555.1 414 68.4
Zm00001eb331970 Zea mays HOM05D005052 ORTHO05D006226 2.5e-155 552.7 352 78.7
Lsat_1_v5_gn_3_125660 Lactuca sativa HOM05D005052 ORTHO05D006226 7.9e-154 547.7 383 74.9
Actinidia28717 Actinidia chinensis HOM05D005052 ORTHO05D006226 8.8e-153 544.3 437 66.8
CBR_g10969 Chara braunii HOM05D005052 ORTHO05D006226 3.1e-150 535.8 373 69.4
Actinidia17421 Actinidia chinensis HOM05D005052 ORTHO05D006226 4.7e-146 521.9 287 88.5
Cre08.g368950 Chlamydomonas reinhardtii HOM05D005052 ORTHO05D006226 3.3e-144 515.8 372 68.3
EL10Ac6g15523 Beta vulgaris HOM05D005052 ORTHO05D006226 1.2e-141 507.3 494 57.9
CDE04G1415 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 7.2e-139 498.0 287 84.0
MCO01G625 Micromonas commoda HOM05D005052 ORTHO05D006226 4.0e-137 492.3 420 59.3
PRCOL_00000314 Prasinoderma coloniale HOM05D005052 ORTHO05D006226 3.6e-130 469.2 363 63.4
Hma1.2p1_0315F.1_g122330 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 1.4e-129 467.2 366 67.8
Ah.03g149130 Amaranthus hybridus HOM05D005052 ORTHO05D006226 2.0e-125 453.4 334 73.1
Manes.02G107200 Manihot esculenta HOM05D005052 ORTHO05D006226 1.1e-123 447.6 333 72.7
Dinv33661 Davidia involucrata HOM05D005052 ORTHO05D006226 4.5e-117 425.6 233 88.0
SEGI_14262 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.0e-113 414.5 258 77.5
Hma1.2p1_2620F.1_g325580 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 3.0e-108 396.4 446 52.9
CDE02G2775 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 3.3e-107 392.9 301 66.4
SEGI_08539 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 3.5e-93 346.3 224 73.7
CDE02G1558 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 2.1e-85 320.5 256 66.0
SGA_v2.0_scaffold273G46395 Striga asiatica HOM05D005052 ORTHO05D006226 2.9e-79 300.1 201 70.1
Lsat_1_v5_gn_0_46241 Lactuca sativa HOM05D005052 ORTHO05D006226 1.4e-78 297.7 299 48.5
TPR.G6592 Trifolium pratense HOM05D005052 ORTHO05D006226 9.0e-73 278.5 273 57.5
RcHm_v2.0_Chr2g0099011 Rosa chinensis HOM05D005052 ORTHO05D006226 1.3e-71 274.6 246 58.9
unitig_699.g19702 Utricularia gibba HOM05D005052 ORTHO05D006226 8.4e-71 271.9 161 82.0
Haze_27270 Corylus avellana HOM05D005052 ORTHO05D006226 6.0e-69 265.8 359 43.5
Cfa024476 Carpinus fangiana HOM05D003566 ORTHO05D126353 1.1e-54 218.4 339 41.6
Dinv33662 Davidia involucrata HOM05D005052 ORTHO05D006226 6.1e-53 212.6 205 60.5
Rhsim07G0143100 Rhododendron simsii HOM05D005052 ORTHO05D006226 5.5e-46 189.5 184 58.7
unitig_699.g19703 Utricularia gibba HOM05D005052 ORTHO05D006226 2.3e-44 184.1 209 55.0
SEGI_40904 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 2.5e-43 180.6 113 76.1
Ah.03g149140 Amaranthus hybridus HOM05D000441 ORTHO05D000340 3.2e-30 137.1 77 83.1
SEGI_17140 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 2.6e-27 127.5 83 71.1
SEGI_34573 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 2.6e-27 127.5 83 71.1
MD02G1126200 Malus domestica HOM05D005052 ORTHO05D006226 1.3e-26 125.2 129 54.3
MD14G1099300 Malus domestica HOM05D005052 ORTHO05D006226 1.3e-26 125.2 129 54.3
Rhsim07G0135500 Rhododendron simsii HOM05D005052 ORTHO05D006226 7.2e-22 109.4 67 77.6
DCAR_004721 Daucus carota HOM05D005052 ORTHO05D006226 4.7e-21 106.7 113 52.2
SEGI_22853 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 8.8e-20 102.4 69 69.6
CDE04G1456 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 1.3e-15 88.6 89 57.3
Rhsim07G0135600 Rhododendron simsii HOM05D005052 ORTHO05D339393 1.2e-08 65.5 37 73.0


User provided reference genes

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