Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p10030 Brassica napus HOM05D005734 ORTHO05D006990 4.5e-101 371.3 194 100.0
BcaC04g23124 Brassica carinata HOM05D005734 ORTHO05D006990 5.5e-83 311.2 206 81.6
BcaNung04509 Brassica carinata HOM05D005734 ORTHO05D006990 4.7e-82 308.1 208 80.3
BcaNung05273 Brassica carinata HOM05D005734 ORTHO05D006990 7.9e-82 307.4 204 81.4
C09p11890 Brassica napus HOM05D005734 ORTHO05D006990 7.9e-82 307.4 193 83.9
BolC9t54077H Brassica oleracea HOM05D005734 ORTHO05D006990 6.3e-79 297.7 187 84.0
BcaB02g10036 Brassica carinata HOM05D005734 ORTHO05D006990 1.4e-78 296.6 206 77.2
A07p17570 Brassica napus HOM05D005734 ORTHO05D006990 2.0e-77 292.7 205 76.6
BcaC06g34694 Brassica carinata HOM05D005734 ORTHO05D006990 2.6e-77 292.4 194 78.9
C07p25530 Brassica napus HOM05D005734 ORTHO05D006990 2.6e-77 292.4 194 78.9
BolC7t43073H Brassica oleracea HOM05D005734 ORTHO05D006990 2.6e-77 292.4 194 78.9
BcaC04g23120 Brassica carinata HOM05D005734 ORTHO05D006990 7.7e-77 290.8 193 81.9
Carub.0008s2820 Capsella rubella HOM05D005734 ORTHO05D006990 1.9e-75 286.2 202 76.2
Sp2g30330 Schrenkiella parvula HOM05D005734 ORTHO05D006990 9.4e-75 283.9 203 75.9
AL8G45230 Arabidopsis lyrata HOM05D005734 ORTHO05D006990 6.1e-74 281.2 199 75.9
Thhalv10004735m.g Eutrema salsugineum HOM05D005734 ORTHO05D006990 6.1e-74 281.2 198 76.3
AT5G66290 Arabidopsis thaliana HOM05D005734 ORTHO05D006990 2.2e-68 262.7 188 75.0
Aa31LG1G14770 Aethionema arabicum HOM05D005734 ORTHO05D006990 6.1e-66 254.6 200 70.0
THA.LOC104819182 Tarenaya hassleriana HOM05D005734 ORTHO05D006990 1.6e-61 240.0 189 67.7
CARHR281420 Cardamine hirsuta HOM05D005734 ORTHO05D006990 4.9e-55 218.4 158 74.7
Cc07_g10570 Coffea canephora HOM05D005734 ORTHO05D006990 1.4e-54 216.9 201 58.2
Sopen02g028960 Solanum pennellii HOM05D005734 ORTHO05D006990 1.4e-54 216.9 205 58.0
Solyc02g084220.3 Solanum lycopersicum HOM05D005734 ORTHO05D006990 5.4e-54 214.9 205 57.6
Manes.02G102700 Manihot esculenta HOM05D005734 ORTHO05D006990 1.2e-53 213.8 189 59.8
DCAR_017347 Daucus carota HOM05D005734 ORTHO05D006990 3.5e-53 212.2 201 57.7
CsaV3_4G005730 Cucumis sativus L. HOM05D005734 ORTHO05D006990 1.3e-52 210.3 209 54.5
Peaxi162Scf00083g00086 Petunia axillaris HOM05D005734 ORTHO05D006990 2.9e-52 209.1 205 57.6
Gorai.003G010600 Gossypium raimondii HOM05D005734 ORTHO05D006990 5.0e-52 208.4 191 57.6
Rhsim08G0034500 Rhododendron simsii HOM05D005734 ORTHO05D006990 5.0e-52 208.4 182 60.4
Lj2C466G2 Lonicera japonica HOM05D005734 ORTHO05D006990 6.6e-52 208.0 203 56.2
TAR376G0390 Trochodendron aralioides HOM05D005734 ORTHO05D006990 8.6e-52 207.6 188 58.0
ClCG07G008420 Citrullus lanatus HOM05D005734 ORTHO05D006990 1.1e-51 207.2 209 54.1
Dinv33615 Davidia involucrata HOM05D005734 ORTHO05D006990 1.1e-51 207.2 213 54.0
Gohir.D03G010200 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.5e-51 206.8 191 57.1
PGSC0003DMG400003554 Solanum tuberosum HOM05D005734 ORTHO05D006990 4.3e-51 205.3 230 50.9
TWI73G0895 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 4.3e-51 205.3 201 54.7
MSTRG.2698 Avicennia marina HOM05D005734 ORTHO05D006990 5.6e-51 204.9 202 55.0
Gohir.A02G169800 Gossypium hirsutum HOM05D005734 ORTHO05D006990 5.6e-51 204.9 185 58.9
Thecc.01G021200 Theobroma cacao HOM05D005734 ORTHO05D006990 1.2e-50 203.8 197 57.4
Nitab4.5_0005721g0110 Nicotiana tabacum HOM05D005734 ORTHO05D006990 2.8e-50 202.6 216 55.1
Ciclev10026469m.g Citrus clementina HOM05D005734 ORTHO05D006990 3.6e-50 202.2 181 57.5
Nitab4.5_0004254g0030 Nicotiana tabacum HOM05D005734 ORTHO05D006990 3.6e-50 202.2 215 54.9
Sabra07G0011400 Salix brachista HOM05D005734 ORTHO05D006990 6.1e-50 201.4 189 56.6
SalBow3G4629 Salvia bowleyana HOM05D005734 ORTHO05D006990 6.1e-50 201.4 203 53.7
GSVIVG01018804001 Vitis vinifera HOM05D005734 ORTHO05D006990 6.1e-50 201.4 187 57.8
Eucgr.K02152 Eucalyptus grandis HOM05D005734 ORTHO05D006990 8.0e-50 201.1 195 54.9
Phvul.002G110400 Phaseolus vulgaris HOM05D005734 ORTHO05D006990 8.0e-50 201.1 198 56.6
Lalb_Chr16g0391171 Lupinus albus HOM05D005734 ORTHO05D006990 1.4e-49 200.3 185 57.8
COL.COLO4_21933 Corchorus olitorius HOM05D005734 ORTHO05D006990 1.8e-49 199.9 209 53.1
Sabra05G0095300 Salix brachista HOM05D005734 ORTHO05D006990 4.0e-49 198.7 189 56.1
Actinidia31004 Actinidia chinensis HOM05D005734 ORTHO05D006990 6.8e-49 198.0 197 54.3
arahy.Tifrunner.gnm1.ann1.GC558H Arachis hypogaea HOM05D005734 ORTHO05D006990 6.8e-49 198.0 187 57.2
QL06p033653 Quercus lobata HOM05D005734 ORTHO05D006990 8.9e-49 197.6 197 54.3
MD15G1247200 Malus domestica HOM05D005734 ORTHO05D006990 1.2e-48 197.2 182 56.6
VMungo1215G0268 Vigna mungo HOM05D005734 ORTHO05D006990 1.2e-48 197.2 197 54.8
CSS0031169 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 2.0e-48 196.4 196 51.0
Lj2g0025294 Lotus japonicus HOM05D005734 ORTHO05D006990 2.0e-48 196.4 185 57.3
Ca_24908_v3 Cicer arietinum L. HOM05D005734 ORTHO05D006990 4.4e-48 195.3 205 51.2
Glyma.11G075600 Glycine max HOM05D005734 ORTHO05D006990 4.4e-48 195.3 198 54.0
Medtr5g021750 Medicago truncatula HOM05D005734 ORTHO05D006990 5.7e-48 194.9 203 50.7
TPR.G2344 Trifolium pratense HOM05D005734 ORTHO05D006990 5.7e-48 194.9 199 51.8
CiPaw.08G133400 Carya illinoinensis HOM05D005734 ORTHO05D006990 9.8e-48 194.1 195 55.4
Sed0005630 Sechium edule HOM05D005734 ORTHO05D006990 1.7e-47 193.4 191 53.9
TAR628G0339 Trochodendron aralioides HOM05D005734 ORTHO05D006990 2.2e-47 193.0 209 51.2
ATR0147G004 Amborella trichopoda HOM05D005734 ORTHO05D006990 2.9e-47 192.6 180 56.7
Migut.H01144 Erythranthe guttata HOM05D005734 ORTHO05D006990 2.9e-47 192.6 208 51.4
Duzib147G0754 Durio zibethinus HOM05D005734 ORTHO05D006990 3.7e-47 192.2 181 56.9
FvH4_1g12000 Fragaria vesca HOM05D005734 ORTHO05D006990 3.7e-47 192.2 195 51.8
TWI09G0878 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 8.3e-47 191.0 195 55.4
FAN19G0086 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.1e-46 190.7 195 51.8
RcHm_v2.0_Chr2g0099641 Rosa chinensis HOM05D005734 ORTHO05D006990 1.1e-46 190.7 184 53.3
Potri.005G116300 Populus trichocarpa HOM05D005734 ORTHO05D006990 1.4e-46 190.3 189 54.0
Glyma.01G167600 Glycine max HOM05D005734 ORTHO05D006990 3.2e-46 189.1 198 53.0
PSO210G7806 Papaver somniferum HOM05D005734 ORTHO05D006990 3.2e-46 189.1 191 53.9
Nn6g32291 Nelumbo nucifera HOM05D005734 ORTHO05D006990 4.1e-46 188.7 190 53.7
EL10Ac3g07303 Beta vulgaris HOM05D005734 ORTHO05D006990 7.0e-46 188.0 188 52.7
MD02G1134200 Malus domestica HOM05D005734 ORTHO05D006990 7.0e-46 188.0 206 49.5
Cpa.g.sc6.229 Carica papaya HOM05D005734 ORTHO05D006990 2.7e-45 186.0 182 57.1
Psat2g155360 Pisum sativum HOM05D005734 ORTHO05D006990 4.6e-45 185.3 200 51.0
Aqoxy4G02678 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 7.8e-45 184.5 194 51.0
Prupe.7G166600 Prunus persica HOM05D005734 ORTHO05D006990 1.3e-44 183.7 200 50.5
Ah.03g141620 Amaranthus hybridus HOM05D005734 ORTHO05D006990 2.3e-44 183.0 181 54.7
Aqoxy4G02673 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 2.3e-44 183.0 194 50.5
FAN26G0019 Fragaria x ananassa HOM05D005734 ORTHO05D006990 6.6e-44 181.4 186 52.2
ECA246G4348 Erigeron canadensis HOM05D000013 ORTHO05D000011 1.5e-43 180.3 192 50.5
HanXRQChr16g0531031 Helianthus annuus HOM05D005734 ORTHO05D006990 1.9e-43 179.9 197 50.8
Lsat_1_v5_gn_3_73980 Lactuca sativa HOM05D005734 ORTHO05D006990 2.5e-43 179.5 199 50.8
vmacro18422 Vaccinium macrocarpon HOM05D005734 ORTHO05D006990 4.3e-43 178.7 253 43.9
unitig_699.g19712 Utricularia gibba HOM05D005734 ORTHO05D006990 9.5e-43 177.6 184 50.5
HPP92_018404 Vanilla planifolia HOM05D005734 ORTHO05D006990 2.8e-42 176.0 196 48.0
MBI05_g26512_MAGBIO Magnolia biondii HOM05D005734 ORTHO05D006990 6.2e-42 174.9 192 49.0
Nn5g29268 Nelumbo nucifera HOM05D005734 ORTHO05D006990 1.0e-41 174.1 181 53.0
BraA09t36646Z Brassica rapa HOM05D005734 ORTHO05D006990 1.8e-41 173.3 112 82.1
Hund14038 Selenicereus undatus HOM05D005734 ORTHO05D006990 1.8e-41 173.3 230 44.8
Atru.chr3.782 Acer truncatum HOM05D005734 ORTHO05D006990 3.1e-41 172.6 138 63.0
Cfa006957 Carpinus fangiana HOM05D005734 ORTHO05D006990 4.0e-41 172.2 117 70.9
CSS0012385 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 6.8e-41 171.4 136 61.8
CSS0021905 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 1.5e-40 170.2 136 61.8
arahy.Tifrunner.gnm1.ann1.DFQ3ES Arachis hypogaea HOM05D005734 ORTHO05D006990 2.6e-40 169.5 115 71.3
Gohir.A12G060300 Gossypium hirsutum HOM05D005734 ORTHO05D006990 2.6e-40 169.5 193 50.3
HanXRQChr15g0482851 Helianthus annuus HOM05D005734 ORTHO05D006990 3.4e-40 169.1 191 49.7
Os03g0727100 Oryza sativa ssp. japonica HOM05D005734 ORTHO05D006990 2.2e-39 166.4 193 47.7
QL06p033647 Quercus lobata HOM05D005734 ORTHO05D006990 2.2e-39 166.4 126 64.3
ATR0876G001 Amborella trichopoda HOM05D005734 ORTHO05D006990 1.1e-38 164.1 110 68.2
Sc16g0002040 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.1e-38 164.1 122 64.8
Lsat_1_v5_gn_4_152781 Lactuca sativa HOM05D005734 ORTHO05D006990 9.2e-38 161.0 179 48.0
Zm00001eb055930 Zea mays HOM05D005734 ORTHO05D006990 9.2e-38 161.0 195 45.6
RcHm_v2.0_Chr0c39g0503221 Rosa chinensis HOM05D005734 ORTHO05D006990 2.7e-37 159.5 132 58.3
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 2.7e-37 159.5 132 58.3
RcHm_v2.0_Chr5g0080231 Rosa chinensis HOM05D005734 ORTHO05D006990 4.6e-37 158.7 132 57.6
SGA_v2.0_scaffold137G35098 Striga asiatica HOM05D005734 ORTHO05D006990 4.6e-37 158.7 108 70.4
AUR62018084 Chenopodium quinoa HOM05D005734 ORTHO05D006990 3.0e-36 156.0 116 63.8
MELO3C016376.2 Cucumis melo HOM05D005734 ORTHO05D006990 2.7e-29 132.9 138 54.3
Potri.007G014000 Populus trichocarpa HOM05D005734 ORTHO05D006990 4.6e-29 132.1 158 47.5
FAN23G1819 Fragaria x ananassa HOM05D005734 ORTHO05D006990 7.3e-27 124.8 185 43.2
CDE11G0627 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 9.5e-27 124.4 101 57.4
Sc18g0002570 Simmondsia chinensis HOM05D005734 ORTHO05D006990 4.7e-26 122.1 83 72.3
Sc16g0006390 Simmondsia chinensis HOM05D005734 ORTHO05D006990 6.2e-26 121.7 88 69.3
Sc09g0006730 Simmondsia chinensis HOM05D005734 ORTHO05D006990 4.4e-24 115.5 88 65.9
Pp3c1_42750 Physcomitrium patens HOM05D005734 ORTHO05D006990 2.2e-23 113.2 204 36.8
Haze_03794 Corylus avellana HOM05D005734 ORTHO05D006990 1.3e-20 104.0 69 72.5
Pp3c14_25740 Physcomitrium patens HOM05D005734 ORTHO05D006990 1.5e-19 100.5 209 33.5
PSO170G3799 Papaver somniferum HOM05D005734 ORTHO05D006990 7.3e-19 98.2 124 45.2
Gorai.008G063500 Gossypium raimondii HOM05D005734 ORTHO05D006990 3.6e-18 95.9 116 50.9
CDE05G1720 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 2.4e-17 93.2 148 41.2
SMO228G0004 Selaginella moellendorffii HOM05D005734 ORTHO05D006990 3.1e-17 92.8 110 40.9
Mapoly0166s0009 Marchantia polymorpha HOM05D005734 ORTHO05D006990 5.2e-17 92.0 145 36.6
Lsat_1_v5_gn_4_38760 Lactuca sativa HOM05D005734 ORTHO05D006990 4.4e-16 89.0 121 41.3
RcHm_v2.0_Chr2g0126361 Rosa chinensis HOM05D005734 ORTHO05D006990 1.1e-14 84.3 59 62.7
Lj2C474G2 Lonicera japonica HOM05D005734 ORTHO05D006990 1.0e-12 77.8 67 61.2
FAN28G1963 Fragaria x ananassa HOM05D005734 ORTHO05D006990 7.3e-11 71.6 101 39.6
Lj2A474G36 Lonicera japonica HOM05D005734 ORTHO05D006990 5.3e-09 65.5 153 30.1
AagrBONN_evm.TU.Sc2ySwM_117.481 Anthoceros agrestis HOM05D005734 ORTHO05D006990 9.0e-09 64.7 143 32.2
Medtr5g021780 Medicago truncatula HOM05D005734 ORTHO05D006990 2.2e-07 60.1 82 39.0
Gohir.D12G060400 Gossypium hirsutum HOM05D005734 ORTHO05D006990 3.8e-07 59.3 68 47.1


User provided reference genes

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