Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 2.9e-125 451.8 218 100.0
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 7.2e-124 447.2 218 98.6
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 2.1e-115 419.1 219 91.8
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 2.1e-115 419.1 219 91.8
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 5.2e-114 414.5 220 91.4
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 6.8e-114 414.1 218 91.7
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 2.7e-110 402.1 216 89.8
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 2.3e-109 399.1 216 88.9
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 5.0e-109 397.9 218 88.5
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 1.6e-107 392.9 216 89.4
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 4.4e-105 384.8 218 84.4
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 6.4e-104 380.9 218 83.9
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 1.2e-102 376.7 210 86.7
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 1.6e-102 376.3 218 83.9
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 1.6e-102 376.3 218 83.9
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 2.3e-101 372.5 218 83.0
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 3.9e-101 371.7 218 83.0
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 1.9e-100 369.4 218 82.6
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 1.2e-99 366.7 216 80.6
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 1.7e-96 356.3 207 84.1
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 2.4e-95 352.4 219 75.8
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 2.4e-95 352.4 219 78.1
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 5.4e-95 351.3 219 76.7
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 9.2e-95 350.5 220 75.9
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 4.6e-94 348.2 219 77.2
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 3.9e-93 345.1 219 77.6
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 1.9e-92 342.8 219 77.2
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 2.0e-89 332.8 221 73.8
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 5.8e-89 331.3 221 73.3
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 8.3e-88 327.4 237 69.6
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 1.9e-87 326.2 222 72.5
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 2.4e-87 325.9 222 72.5
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 3.2e-87 325.5 221 73.3
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 3.2e-87 325.5 222 73.0
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.2e-87 325.5 222 72.1
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 5.4e-87 324.7 221 73.8
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 5.4e-87 324.7 222 72.5
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 7.1e-87 324.3 222 72.5
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 9.2e-87 323.9 221 72.4
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.2e-86 323.6 222 72.1
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 1.6e-86 323.2 221 72.9
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 2.1e-86 322.8 223 72.6
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 2.1e-86 322.8 219 73.1
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 2.7e-86 322.4 221 72.9
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 3.5e-86 322.0 221 72.9
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 4.6e-86 321.6 221 72.9
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 4.6e-86 321.6 221 73.3
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 7.8e-86 320.9 221 72.4
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 1.3e-85 320.1 221 72.4
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 1.3e-85 320.1 221 71.5
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 1.7e-85 319.7 221 71.9
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 2.3e-85 319.3 221 71.5
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 2.3e-85 319.3 219 71.7
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 3.0e-85 318.9 221 71.9
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 3.0e-85 318.9 221 72.4
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 3.0e-85 318.9 221 71.5
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 6.6e-85 317.8 221 71.9
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 1.1e-84 317.0 221 71.9
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 1.1e-84 317.0 220 71.4
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 1.9e-84 316.2 221 70.1
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 2.5e-84 315.8 221 72.4
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 3.3e-84 315.5 221 70.6
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 4.3e-84 315.1 221 72.9
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 7.3e-84 314.3 220 72.3
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 7.3e-84 314.3 220 68.6
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 1.6e-83 313.2 220 68.6
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 1.6e-83 313.2 192 77.1
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 2.8e-83 312.4 221 70.1
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 1.1e-82 310.5 192 75.5
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 1.1e-82 310.5 220 70.9
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 2.3e-82 309.3 220 69.5
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 4.0e-82 308.5 192 77.1
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 2.0e-81 306.2 221 70.1
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 2.6e-81 305.8 226 71.7
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 2.6e-81 305.8 226 71.7
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 2.6e-81 305.8 192 74.5
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 7.6e-81 304.3 195 75.4
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 9.9e-81 303.9 218 67.0
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 1.7e-80 303.1 221 69.2
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 2.2e-80 302.8 221 67.4
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 2.9e-80 302.4 220 68.6
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 3.8e-80 302.0 192 74.0
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 4.9e-80 301.6 221 68.8
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 1.1e-79 300.4 221 71.9
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 1.4e-79 300.1 199 74.4
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 2.4e-79 299.3 220 69.1
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 2.4e-79 299.3 220 69.1
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 5.4e-79 298.1 230 67.0
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 7.1e-79 297.7 196 72.4
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 2.1e-78 296.2 221 66.5
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 2.1e-78 296.2 193 73.1
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 2.7e-78 295.8 222 67.6
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 4.6e-78 295.0 222 67.1
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 7.8e-78 294.3 220 67.7
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 1.0e-77 293.9 222 66.7
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 1.3e-77 293.5 222 66.2
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 1.1e-76 290.4 197 72.1
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 1.1e-76 290.4 221 65.2
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 1.1e-76 290.4 221 65.2
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 1.5e-76 290.0 198 74.2
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 1.9e-76 289.7 194 73.2
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 1.9e-76 289.7 233 64.4
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 6.2e-75 284.6 221 66.1
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 8.1e-75 284.3 193 71.5
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 4.0e-74 282.0 193 69.4
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 1.5e-73 280.0 220 60.9
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 4.4e-73 278.5 301 51.5
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 2.9e-72 275.8 195 70.3
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 4.2e-71 271.9 179 73.7
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 6.0e-70 268.1 211 63.0
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 3.3e-68 262.3 217 57.1
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 7.3e-68 261.2 204 65.2
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 2.8e-67 259.2 290 50.3
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 6.2e-67 258.1 219 58.9
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 1.1e-66 257.3 191 67.0
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 2.4e-66 256.1 220 57.3
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 4.0e-66 255.4 215 58.6
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 4.0e-66 255.4 215 58.6
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 1.2e-65 253.8 222 61.7
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 3.0e-61 239.2 219 56.6
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 1.9e-60 236.5 178 68.5
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 3.3e-60 235.7 172 68.6
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 6.2e-59 231.5 168 69.6
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 1.1e-58 230.7 192 58.3
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 3.1e-58 229.2 222 51.4
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 3.8e-56 222.2 222 50.9
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 6.4e-56 221.5 220 50.0
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 4.2e-55 218.8 164 67.7
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 7.1e-55 218.0 195 55.4
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 9.6e-52 207.6 168 64.3
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 6.9e-50 201.4 196 56.6
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 2.6e-49 199.5 159 65.4
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 6.3e-43 178.3 163 55.2
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 2.4e-42 176.4 216 44.0
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 2.4e-42 176.4 182 52.2
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 1.0e-40 171.0 93 81.7
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 3.8e-40 169.1 150 54.7
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 1.8e-34 150.2 221 35.3
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 6.9e-34 148.3 228 35.5
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 1.4e-31 140.6 139 53.2
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.9e-29 132.5 84 73.8
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 5.7e-28 128.6 216 34.7
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 8.2e-27 124.8 84 64.3
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 1.7e-24 117.1 100 64.0
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 5.7e-20 102.1 139 41.7
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 3.7e-19 99.4 77 67.5
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 1.0e-16 91.3 88 51.1
Cfa024505 Carpinus fangiana HOM05D005053 ORTHO05D124968 1.5e-07 60.8 186 23.1
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 4.2e-07 59.3 142 35.2


User provided reference genes

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