Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p07830 Brassica napus HOM05D005796 ORTHO05D007054 2.7e-130 468.8 255 100.0
BraA09t36434Z Brassica rapa HOM05D005796 ORTHO05D007054 2.7e-130 468.8 255 100.0
BcaC04g23395 Brassica carinata HOM05D005796 ORTHO05D007054 5.3e-126 454.5 255 92.5
BolC9t53794H Brassica oleracea HOM05D005796 ORTHO05D007054 8.4e-124 447.2 255 91.0
Thhalv10004798m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 5.9e-109 397.9 256 81.2
BcaB02g09686 Brassica carinata HOM05D005796 ORTHO05D007054 3.2e-107 392.1 255 79.2
BraA06t25896Z Brassica rapa HOM05D005796 ORTHO05D007054 5.5e-107 391.3 255 78.8
BcaC01g02511 Brassica carinata HOM05D005796 ORTHO05D007054 1.0e-105 387.1 255 79.2
BolC3t18656H Brassica oleracea HOM05D005796 ORTHO05D007054 1.0e-105 387.1 255 79.2
Sp2g25890 Schrenkiella parvula HOM05D005796 ORTHO05D007054 1.8e-105 386.3 255 80.0
BcaNung01383 Brassica carinata HOM05D005796 ORTHO05D007054 5.1e-105 384.8 243 84.0
C09p08810 Brassica napus HOM05D005796 ORTHO05D007054 8.2e-103 377.5 218 91.7
AL8G39690 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 3.1e-102 375.6 255 78.8
AT5G62720 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 3.8e-100 368.6 255 78.4
A06p29510 Brassica napus HOM05D000012 ORTHO05D002455 1.5e-99 366.7 241 79.3
C03p64010 Brassica napus HOM05D000012 ORTHO05D002455 1.6e-98 363.2 241 79.3
CARHR276510 Cardamine hirsuta HOM05D005796 ORTHO05D007054 4.7e-98 361.7 255 77.3
Carub.0008s2345 Capsella rubella HOM05D005796 ORTHO05D007054 6.1e-98 361.3 255 77.6
BcaB02g09676 Brassica carinata HOM05D005796 ORTHO05D007054 7.4e-96 354.4 241 77.2
Aa31LG11G960 Aethionema arabicum HOM05D005796 ORTHO05D007054 5.2e-89 331.6 259 70.7
BcaB05g22893 Brassica carinata HOM05D005796 ORTHO05D007054 1.3e-79 300.4 262 64.9
CARHR156700 Cardamine hirsuta HOM05D005796 ORTHO05D007054 2.8e-79 299.3 256 64.5
C01p32410 Brassica napus HOM05D005796 ORTHO05D007054 1.1e-78 297.4 262 63.7
BolC1t03180H Brassica oleracea HOM05D005796 ORTHO05D007054 1.8e-78 296.6 262 63.7
Carub.0005s1409 Capsella rubella HOM05D005796 ORTHO05D007054 3.1e-78 295.8 257 64.6
AT3G47980 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 9.1e-78 294.3 262 63.7
Sp5g14000 Schrenkiella parvula HOM05D005796 ORTHO05D007054 9.1e-78 294.3 262 63.0
AL5G27300 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 1.6e-77 293.5 263 63.5
A01p25720 Brassica napus HOM05D005796 ORTHO05D007054 1.6e-77 293.5 262 63.0
BraA01t02488Z Brassica rapa HOM05D005796 ORTHO05D007054 2.7e-77 292.7 262 63.0
BraA06t25046Z Brassica rapa HOM05D005796 ORTHO05D007054 3.5e-77 292.4 262 64.5
A06p19660 Brassica napus HOM05D005796 ORTHO05D007054 3.8e-76 288.9 262 64.1
THA.LOC104821456 Tarenaya hassleriana HOM05D005796 ORTHO05D007054 4.2e-75 285.4 258 62.4
Potri.015G065500 Populus trichocarpa HOM05D005796 ORTHO05D007054 4.7e-74 282.0 192 71.4
Gohir.A07G065400 Gossypium hirsutum HOM05D005796 ORTHO05D007054 1.8e-73 280.0 204 67.2
Gorai.001G073800 Gossypium raimondii HOM05D005796 ORTHO05D007054 3.0e-73 279.3 204 67.2
Atru.chr9.2321 Acer truncatum HOM05D005796 ORTHO05D007054 3.7e-71 272.3 190 70.5
TAR481G0014 Trochodendron aralioides HOM05D005796 ORTHO05D007054 8.3e-71 271.2 193 70.5
Dinv38663 Davidia involucrata HOM05D005796 ORTHO05D007054 1.8e-70 270.0 208 65.9
Thecc.03G078500 Theobroma cacao HOM05D005796 ORTHO05D007054 1.8e-70 270.0 182 71.4
Manes.14G074300 Manihot esculenta HOM05D005796 ORTHO05D007054 2.4e-70 269.6 188 70.7
TWI60G1143 Tripterygium wilfordii HOM05D005796 ORTHO05D007054 4.1e-70 268.9 188 69.1
Cpa.g.sc414.2 Carica papaya HOM05D005796 ORTHO05D007054 9.2e-70 267.7 189 71.4
Duzib084G0674 Durio zibethinus HOM05D005796 ORTHO05D007054 9.2e-70 267.7 189 67.7
Actinidia04922 Actinidia chinensis HOM05D005796 ORTHO05D007054 1.6e-69 266.9 191 63.9
SGA_v2.0_scaffold7G04086 Striga asiatica HOM05D005796 ORTHO05D007054 2.0e-69 266.5 187 69.5
GSVIVG01008066001 Vitis vinifera HOM05D005796 ORTHO05D007054 2.7e-69 266.2 191 68.6
Sc12g0006170 Simmondsia chinensis HOM05D005796 ORTHO05D007054 4.5e-69 265.4 190 67.9
Prupe.5G185800 Prunus persica HOM05D005796 ORTHO05D007054 5.9e-69 265.0 191 70.2
MSTRG.4407 Avicennia marina HOM05D005796 ORTHO05D007054 7.8e-69 264.6 181 72.4
Ciclev10021819m.g Citrus clementina HOM05D005796 ORTHO05D007054 1.3e-68 263.8 182 70.9
CiPaw.11G037800 Carya illinoinensis HOM05D005796 ORTHO05D007054 2.3e-68 263.1 188 68.6
MD14G1193900 Malus domestica HOM05D005796 ORTHO05D007054 2.9e-68 262.7 191 68.6
MD06G1187500 Malus domestica HOM05D005796 ORTHO05D007054 5.0e-68 261.9 191 68.1
Hma1.2p1_0002F.1_g003270 Hydrangea macrophylla HOM05D005796 ORTHO05D007054 1.1e-67 260.8 189 65.1
Migut.D01857 Erythranthe guttata HOM05D005796 ORTHO05D007054 1.5e-67 260.4 181 69.6
CANSAT80G0862 Cannabis sativa HOM05D005796 ORTHO05D007054 4.3e-67 258.8 190 65.8
RcHm_v2.0_Chr7g0180561 Rosa chinensis HOM05D005796 ORTHO05D007054 7.3e-67 258.1 181 68.5
Gohir.D07G069900 Gossypium hirsutum HOM05D005796 ORTHO05D007054 9.5e-67 257.7 204 64.2
Cc04_g15610 Coffea canephora HOM05D005796 ORTHO05D007054 1.2e-66 257.3 185 68.6
Lalb_Chr13g0303431 Lupinus albus HOM05D005796 ORTHO05D007054 2.1e-66 256.5 189 65.1
FAN13G2643 Fragaria x ananassa HOM05D005796 ORTHO05D007054 2.8e-66 256.1 181 68.5
PSO017G2472 Papaver somniferum HOM05D005796 ORTHO05D007054 3.6e-66 255.8 190 66.8
EL10Ac5g10940 Beta vulgaris HOM05D005796 ORTHO05D007054 4.7e-66 255.4 186 67.2
Sopen03g032340 Solanum pennellii HOM05D005796 ORTHO05D007054 4.7e-66 255.4 169 70.4
ECA247G3495 Erigeron canadensis HOM05D005796 ORTHO05D007054 6.1e-66 255.0 187 64.7
PSO478G3339 Papaver somniferum HOM05D005796 ORTHO05D007054 8.0e-66 254.6 190 67.4
Peaxi162Scf00009g00426 Petunia axillaris HOM05D005796 ORTHO05D007054 1.0e-65 254.2 191 64.4
AUR62008352 Chenopodium quinoa HOM05D005796 ORTHO05D007054 1.8e-65 253.4 211 59.2
arahy.Tifrunner.gnm1.ann1.U2VSD4 Arachis hypogaea HOM05D005796 ORTHO05D007054 2.3e-65 253.1 194 63.4
Hund02671 Selenicereus undatus HOM05D005796 ORTHO05D007054 4.0e-65 252.3 188 68.6
Nitab4.5_0004605g0110 Nicotiana tabacum HOM05D005796 ORTHO05D007054 5.2e-65 251.9 191 62.8
Solyc03g113280.3 Solanum lycopersicum HOM05D005796 ORTHO05D007054 5.2e-65 251.9 169 69.2
FAN08G2559 Fragaria x ananassa HOM05D005796 ORTHO05D007054 8.9e-65 251.1 197 64.0
arahy.Tifrunner.gnm1.ann1.NXA9BP Arachis hypogaea HOM05D005796 ORTHO05D007054 1.5e-64 250.4 194 62.4
HanXRQChr02g0045201 Helianthus annuus HOM05D005796 ORTHO05D007054 1.5e-64 250.4 194 63.9
Glyma.17G096600 Glycine max HOM05D005796 ORTHO05D007054 7.5e-64 248.1 188 64.4
FAN18G3372 Fragaria x ananassa HOM05D005796 ORTHO05D007054 9.8e-64 247.7 197 62.4
PGSC0003DMG400025332 Solanum tuberosum HOM05D005796 ORTHO05D007054 1.7e-63 246.9 187 64.2
VMungo1215G0702 Vigna mungo HOM05D005796 ORTHO05D007054 1.7e-63 246.9 188 63.3
Oeu048731.1 Olea europaea HOM05D005796 ORTHO05D007054 3.7e-63 245.7 177 68.4
FAN04G0326 Fragaria x ananassa HOM05D005796 ORTHO05D007054 4.9e-63 245.4 247 55.9
Sabra15G0090700 Salix brachista HOM05D005796 ORTHO05D007054 4.9e-63 245.4 183 65.0
Nitab4.5_0005402g0010 Nicotiana tabacum HOM05D005796 ORTHO05D007054 1.1e-62 244.2 193 62.2
Eucgr.B00422 Eucalyptus grandis HOM05D005796 ORTHO05D007054 1.4e-62 243.8 167 70.7
DCAR_026077 Daucus carota HOM05D005796 ORTHO05D007054 2.4e-62 243.0 189 65.1
Thhalv10010656m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 2.4e-62 243.0 261 57.5
Lsat_1_v5_gn_1_10700 Lactuca sativa HOM05D005796 ORTHO05D007054 7.0e-62 241.5 190 61.6
Phvul.003G193000 Phaseolus vulgaris HOM05D005796 ORTHO05D007054 1.2e-61 240.7 188 62.2
ClCG01G014370 Citrullus lanatus HOM05D005796 ORTHO05D007054 1.3e-60 237.3 181 65.2
Aqoxy3G00785 Aquilegia oxysepala HOM05D005796 ORTHO05D007054 1.7e-60 236.9 220 56.4
Ca_21851_v3 Cicer arietinum L. HOM05D005796 ORTHO05D007054 3.9e-60 235.7 192 57.8
ATR0665G316 Amborella trichopoda HOM05D005796 ORTHO05D007054 5.0e-60 235.3 195 59.5
MBI03_g20464_MAGBIO Magnolia biondii HOM05D005796 ORTHO05D007054 5.0e-60 235.3 166 66.9
TPR.G38380 Trifolium pratense HOM05D005796 ORTHO05D007054 5.0e-60 235.3 182 59.9
CsaV3_1G007940 Cucumis sativus L. HOM05D005796 ORTHO05D007054 1.1e-59 234.2 165 68.5
MELO3C002210.2 Cucumis melo HOM05D005796 ORTHO05D007054 1.9e-59 233.4 165 67.9
CDE02G2117 Ceratophyllum demersum HOM05D005796 ORTHO05D007054 7.3e-59 231.5 190 60.5
Sed0020047 Sechium edule HOM05D005796 ORTHO05D007054 9.5e-59 231.1 210 55.7
Medtr4g107630 Medicago truncatula HOM05D005796 ORTHO05D007054 2.8e-58 229.6 192 56.8
unitig_899.g15402 Utricularia gibba HOM05D003955 ORTHO05D004684 1.1e-57 227.6 212 55.7
Lj4g0017253 Lotus japonicus HOM05D005796 ORTHO05D007054 4.0e-57 225.7 189 55.0
unitig_0.g783 Utricularia gibba HOM05D005796 ORTHO05D007054 1.5e-56 223.8 173 61.8
Os03g0684700 Oryza sativa ssp. japonica HOM05D005796 ORTHO05D007054 3.4e-56 222.6 153 68.0
BcaB01g00857 Brassica carinata HOM05D005796 ORTHO05D007054 9.8e-56 221.1 212 63.2
BcaC09g49836 Brassica carinata HOM05D005796 ORTHO05D007054 2.9e-55 219.5 212 61.3
Haze_07383 Corylus avellana HOM05D005796 ORTHO05D007054 8.3e-55 218.0 159 70.4
AUR62021745 Chenopodium quinoa HOM05D005796 ORTHO05D007054 7.1e-54 214.9 144 69.4
SEGI_40570 Sequoiadendron giganteum HOM05D005796 ORTHO05D007054 3.5e-53 212.6 191 53.9
vmacro19431 Vaccinium macrocarpon HOM05D005796 ORTHO05D007054 1.7e-52 210.3 207 53.1
PGR083G2169 Punica granatum HOM05D005796 ORTHO05D007054 1.5e-51 207.2 158 64.6
BcaNung07157 Brassica carinata HOM05D005796 ORTHO05D007054 3.3e-51 206.1 166 69.9
Zm00001eb217240 Zea mays HOM05D005796 ORTHO05D007054 3.3e-51 206.1 206 52.4
Aa31LG4G16620 Aethionema arabicum HOM05D005796 ORTHO05D007054 1.6e-50 203.8 176 68.8
COL.COLO4_37386 Corchorus olitorius HOM05D005796 ORTHO05D007054 3.5e-45 186.0 133 69.9
SalBow7G0869 Salvia bowleyana HOM05D005796 ORTHO05D007054 5.6e-43 178.7 131 66.4
PGR083G0992 Punica granatum HOM05D005796 ORTHO05D007054 1.6e-42 177.2 140 63.6
Mapoly0029s0058 Marchantia polymorpha HOM05D005796 ORTHO05D007054 1.8e-41 173.7 156 51.9
SMO356G0151 Selaginella moellendorffii HOM05D005796 ORTHO05D007054 3.1e-41 172.9 142 56.3
AagrBONN_evm.TU.Sc2ySwM_228.2536 Anthoceros agrestis HOM05D005796 ORTHO05D007054 2.0e-40 170.2 168 50.0
Lj9A459G48 Lonicera japonica HOM05D005796 ORTHO05D007054 7.6e-40 168.3 130 62.3
Sabra12G0050500 Salix brachista HOM05D005796 ORTHO05D007054 4.6e-37 159.1 150 58.7
QL10p015509 Quercus lobata HOM05D005796 ORTHO05D007054 8.7e-36 154.8 95 74.7
Zm00001eb053360 Zea mays HOM05D005796 ORTHO05D007054 2.2e-31 140.2 148 52.0
CAN.G4519.1 Capsicum annuum HOM05D005796 ORTHO05D007054 1.6e-29 134.0 84 71.4
QL10p015507 Quercus lobata HOM05D005796 ORTHO05D007054 6.0e-21 105.5 90 60.0
FvH4_5g15530 Fragaria vesca HOM05D005796 ORTHO05D007054 8.7e-20 101.7 82 61.0
Sed0018874 Sechium edule HOM05D005796 ORTHO05D007054 2.4e-17 93.6 88 55.7
C09p08830 Brassica napus HOM05D005796 ORTHO05D007054 4.6e-13 79.3 37 97.3
Nn4g23032 Nelumbo nucifera HOM05D005796 ORTHO05D007054 2.3e-12 77.0 124 40.3
Glyma.05G030200 Glycine max HOM05D005796 ORTHO05D007054 5.1e-12 75.9 50 66.0
Rhsim08G0160200 Rhododendron simsii HOM05D005796 ORTHO05D007054 7.2e-06 55.5 79 40.5


User provided reference genes

Program Settings