Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p07760 Brassica napus HOM05D004904 ORTHO05D010762 1.7e-78 295.8 136 100.0
BraA09t36424Z Brassica rapa HOM05D004904 ORTHO05D010762 1.7e-78 295.8 136 100.0
BcaC04g23406 Brassica carinata HOM05D004904 ORTHO05D010762 1.6e-76 289.3 136 97.1
BolC9t53777H Brassica oleracea HOM05D004904 ORTHO05D010762 4.6e-76 287.7 136 96.3
C09p08660 Brassica napus HOM05D004904 ORTHO05D010762 1.9e-74 282.3 133 97.0
A10p15680 Brassica napus HOM05D004904 ORTHO05D010762 9.2e-69 263.5 136 87.5
BraA10t43666Z Brassica rapa HOM05D004904 ORTHO05D010762 9.2e-69 263.5 136 87.5
C09p50630 Brassica napus HOM05D004904 ORTHO05D010762 2.3e-67 258.8 136 86.0
BolC9t57916H Brassica oleracea HOM05D004904 ORTHO05D010762 2.3e-67 258.8 136 86.0
C09p08640 Brassica napus HOM05D004904 ORTHO05D010762 1.4e-61 239.6 133 82.0
BolC9t53775H Brassica oleracea HOM05D004904 ORTHO05D010762 1.4e-61 239.6 133 82.0
A09p07720 Brassica napus HOM05D004904 ORTHO05D010762 1.9e-61 239.2 133 80.5
BraA09t36422Z Brassica rapa HOM05D004904 ORTHO05D010762 4.6e-60 234.6 133 78.9
BcaC04g23408 Brassica carinata HOM05D004904 ORTHO05D010762 2.5e-58 228.8 126 82.5
BcaB06g25859 Brassica carinata HOM05D004904 ORTHO05D010762 1.5e-55 219.5 130 73.8
C09p08630 Brassica napus HOM05D004904 ORTHO05D010762 2.9e-54 215.3 133 72.2
BolC9t53774H Brassica oleracea HOM05D004904 ORTHO05D010762 2.9e-54 215.3 133 72.2
BraA09t36421Z Brassica rapa HOM05D004904 ORTHO05D010762 4.6e-52 208.0 133 69.9
A09p07710 Brassica napus HOM05D004904 ORTHO05D010762 6.0e-52 207.6 133 69.9
BcaNung01392 Brassica carinata HOM05D004904 ORTHO05D010762 3.9e-51 204.9 119 73.9
BolC2t12283H Brassica oleracea HOM05D004904 ORTHO05D010762 4.5e-47 191.4 137 60.6
A02p42370 Brassica napus HOM05D004904 ORTHO05D010762 5.8e-47 191.0 137 61.3
BraA02t09168Z Brassica rapa HOM05D004904 ORTHO05D010762 5.8e-47 191.0 137 61.3
Thhalv10005414m.g Eutrema salsugineum HOM05D004904 ORTHO05D010762 5.8e-47 191.0 135 61.5
CARHR057800 Cardamine hirsuta HOM05D004904 ORTHO05D010762 1.2e-44 183.3 137 61.3
Carub.0007s3223 Capsella rubella HOM05D004904 ORTHO05D010762 1.8e-43 179.5 135 57.8
Carub.0007s3224 Capsella rubella HOM05D004904 ORTHO05D010762 6.7e-43 177.6 131 55.7
Thhalv10005113m.g Eutrema salsugineum HOM05D004904 ORTHO05D010762 1.5e-42 176.4 137 56.2
CARHR216110 Cardamine hirsuta HOM05D004904 ORTHO05D010762 2.5e-42 175.6 137 59.1
CARHR216060 Cardamine hirsuta HOM05D004904 ORTHO05D010762 5.6e-42 174.5 135 57.8
CARHR216070 Cardamine hirsuta HOM05D004904 ORTHO05D010762 5.6e-42 174.5 138 58.7
A09p07740 Brassica napus HOM05D004904 ORTHO05D010762 2.4e-40 169.1 135 57.0
Thhalv10005700m.g Eutrema salsugineum HOM05D004904 ORTHO05D010762 2.6e-39 165.6 135 53.3
CARHR112870 Cardamine hirsuta HOM05D004904 ORTHO05D010762 7.6e-39 164.1 135 54.8
C09p08620 Brassica napus HOM05D004904 ORTHO05D010762 4.9e-38 161.4 103 65.0
AL7G45640 Arabidopsis lyrata HOM05D004904 ORTHO05D010762 1.4e-37 159.8 127 52.0
AL7G45630 Arabidopsis lyrata HOM05D002460 ORTHO05D002716 1.9e-37 159.5 118 55.9
CARHR219950 Cardamine hirsuta HOM05D004904 ORTHO05D010762 6.5e-30 134.4 108 54.6
CARHR220080 Cardamine hirsuta HOM05D004904 ORTHO05D012458 9.3e-29 130.6 134 47.0
BcaNung01393 Brassica carinata HOM05D004904 ORTHO05D010762 7.9e-28 127.5 78 67.9
Carub.0001s4015 Capsella rubella HOM05D004904 ORTHO05D012458 1.8e-27 126.3 138 44.9
Carub.0001s4014 Capsella rubella HOM05D004904 ORTHO05D012458 5.1e-27 124.8 138 44.2
AT1G51240 Arabidopsis thaliana HOM05D004904 ORTHO05D012458 1.1e-26 123.6 138 46.4
BcaC04g23409 Brassica carinata HOM05D004904 ORTHO05D010762 7.4e-26 120.9 80 62.5
CARHR102030 Cardamine hirsuta HOM05D004904 ORTHO05D012610 7.4e-26 120.9 139 46.0
AT1G51250 Arabidopsis thaliana HOM05D004904 ORTHO05D012458 3.1e-24 115.5 138 42.0
AL1G59040 Arabidopsis lyrata HOM05D004904 ORTHO05D012458 4.1e-24 115.2 125 44.8
AL1G57680 Arabidopsis lyrata HOM05D004904 ORTHO05D012458 9.0e-24 114.0 136 43.4
Thhalv10015293m.g Eutrema salsugineum HOM05D004904 ORTHO05D015396 9.0e-24 114.0 138 42.0
BolC4t25152H Brassica oleracea HOM05D004904 ORTHO05D012458 5.9e-23 111.3 138 39.9
AT1G51230 Arabidopsis thaliana HOM05D004904 ORTHO05D012458 1.7e-22 109.8 124 43.5
CARHR102040 Cardamine hirsuta HOM05D004904 ORTHO05D012610 1.7e-22 109.8 142 43.0
BraA04t16123Z Brassica rapa HOM05D004904 ORTHO05D012458 3.8e-22 108.6 138 39.1
AT1G09245 Arabidopsis thaliana HOM05D004904 ORTHO05D015396 1.4e-21 106.7 138 39.9
Carub.0003s2589 Capsella rubella HOM05D004904 ORTHO05D012610 1.4e-21 106.7 142 45.8
Carub.0002s0376 Capsella rubella HOM05D004904 ORTHO05D015396 1.9e-21 106.3 141 39.0
AL1G59050 Arabidopsis lyrata HOM05D004904 ORTHO05D012458 3.2e-21 105.5 125 40.8
AT5G39493 Arabidopsis thaliana HOM05D004904 ORTHO05D010762 1.2e-20 103.6 133 41.4
Aa31LG3G3080 Aethionema arabicum HOM05D004904 ORTHO05D002833 2.1e-20 102.8 110 44.5
AL6G36930 Arabidopsis lyrata HOM05D004904 ORTHO05D010762 2.7e-20 102.4 127 41.7
BcaB01g02770 Brassica carinata HOM05D004904 ORTHO05D002833 2.7e-20 102.4 119 42.9
Carub.0007s2940 Capsella rubella HOM05D004904 ORTHO05D010762 2.7e-20 102.4 133 40.6
Carub.0007s2596 Capsella rubella HOM05D004904 ORTHO05D015396 4.6e-20 101.7 143 37.1
Thhalv10029361m.g Eutrema salsugineum HOM05D004904 ORTHO05D002833 4.6e-20 101.7 120 44.2
A03p28790 Brassica napus HOM05D004904 ORTHO05D002833 6.1e-20 101.3 119 42.9
C03p34800 Brassica napus HOM05D004904 ORTHO05D002833 6.1e-20 101.3 119 42.9
BraA03t12076Z Brassica rapa HOM05D004904 ORTHO05D002833 6.1e-20 101.3 119 42.9
Aa31LG3G3090 Aethionema arabicum HOM05D004904 ORTHO05D002833 7.9e-20 100.9 123 42.3
Carub.0001s4013 Capsella rubella HOM05D004904 ORTHO05D012458 1.0e-19 100.5 143 35.7
CARHR041320 Cardamine hirsuta HOM05D004904 ORTHO05D012458 1.8e-19 99.8 141 39.7
C02p62250 Brassica napus HOM05D004904 ORTHO05D000101 2.3e-19 99.4 69 62.3
A06p47670 Brassica napus HOM05D004904 ORTHO05D002833 3.0e-19 99.0 132 40.9
BraA06t27634Z Brassica rapa HOM05D004904 ORTHO05D002833 3.0e-19 99.0 132 40.9
Carub.0007s2927 Capsella rubella HOM05D004904 ORTHO05D010762 3.0e-19 99.0 133 40.6
Thhalv10023047m.g Eutrema salsugineum HOM05D004904 ORTHO05D012610 3.9e-19 98.6 136 40.4
Thhalv10029524m.g Eutrema salsugineum HOM05D004904 ORTHO05D012610 6.7e-19 97.8 139 41.7
Carub.0003s0967 Capsella rubella HOM05D004904 ORTHO05D021430 1.5e-18 96.7 133 38.3
C09p67280 Brassica napus HOM05D003012 ORTHO05D002833 2.5e-18 95.9 134 38.8
Carub.0007s2938 Capsella rubella HOM05D004904 ORTHO05D010762 2.5e-18 95.9 138 39.1
A03p28780 Brassica napus HOM05D004904 ORTHO05D002833 3.3e-18 95.5 119 42.0
A04p21020 Brassica napus HOM05D003012 ORTHO05D002833 4.3e-18 95.1 134 40.3
C07p26380 Brassica napus HOM05D004904 ORTHO05D002833 4.3e-18 95.1 132 37.9
BolC7t43165H Brassica oleracea HOM05D004904 ORTHO05D002833 4.3e-18 95.1 132 37.9
BraA04t17670Z Brassica rapa HOM05D003012 ORTHO05D002833 4.3e-18 95.1 134 40.3
A01p24640 Brassica napus HOM05D004904 ORTHO05D002833 5.7e-18 94.7 132 37.1
Aa31LG3G3070 Aethionema arabicum HOM05D004904 ORTHO05D002833 9.7e-18 94.0 108 41.7
AT2G04115 Arabidopsis thaliana HOM05D004904 ORTHO05D012610 9.7e-18 94.0 138 39.1
C04p62660 Brassica napus HOM05D003012 ORTHO05D002833 9.7e-18 94.0 136 41.2
BolC4t27747H Brassica oleracea HOM05D003012 ORTHO05D002833 9.7e-18 94.0 136 41.2
AL3G21820 Arabidopsis lyrata HOM05D004904 ORTHO05D021430 1.3e-17 93.6 133 39.1
A04p25510 Brassica napus HOM05D003012 ORTHO05D002833 1.7e-17 93.2 135 40.7
BcaC07g41901 Brassica carinata HOM05D004904 ORTHO05D015396 2.2e-17 92.8 115 42.6
BcaC07g41902 Brassica carinata HOM05D004904 ORTHO05D015396 2.2e-17 92.8 115 42.6
C08p44310 Brassica napus HOM05D004904 ORTHO05D012458 2.2e-17 92.8 135 37.8
BolC8t51974H Brassica oleracea HOM05D004904 ORTHO05D012458 2.2e-17 92.8 135 37.8
C08p49560 Brassica napus HOM05D004904 ORTHO05D015396 2.8e-17 92.4 115 42.6
BolC8t52492H Brassica oleracea HOM05D004904 ORTHO05D015396 2.8e-17 92.4 115 42.6
A04p25490 Brassica napus HOM05D003012 ORTHO05D002833 3.7e-17 92.0 135 37.8
BraA04t18052Z Brassica rapa HOM05D003012 ORTHO05D002833 3.7e-17 92.0 135 37.8
A03p28810 Brassica napus HOM05D004904 ORTHO05D002833 6.3e-17 91.3 134 37.3
BraA04t18054Z Brassica rapa HOM05D003012 ORTHO05D002833 8.2e-17 90.9 136 40.4
C04p62630 Brassica napus HOM05D003012 ORTHO05D002833 1.1e-16 90.5 135 37.0
AT3G10455 Arabidopsis thaliana HOM05D004904 ORTHO05D021430 1.4e-16 90.1 135 38.5
C08p44250 Brassica napus HOM05D004904 ORTHO05D012458 1.4e-16 90.1 135 35.6
BraA09t41444Z Brassica rapa HOM05D004904 ORTHO05D012458 2.4e-16 89.4 135 37.0
BraA03t12077Z Brassica rapa HOM05D004904 ORTHO05D002833 3.1e-16 89.0 134 36.6
A03p28800 Brassica napus HOM05D000042 ORTHO05D000028 4.1e-16 88.6 118 39.0
C04p62640 Brassica napus HOM05D003012 ORTHO05D002833 6.9e-16 87.8 120 39.2
BraA09t41446Z Brassica rapa HOM05D004904 ORTHO05D012458 6.9e-16 87.8 135 34.8
Carub.0003s0968 Capsella rubella HOM05D003012 ORTHO05D002833 9.1e-16 87.4 133 37.6
BraA09t41901Z Brassica rapa HOM05D004904 ORTHO05D015396 1.2e-15 87.0 117 42.7
Aa31LG3G3060 Aethionema arabicum HOM05D004904 ORTHO05D002833 1.5e-15 86.7 106 38.7
BolC4t27745H Brassica oleracea HOM05D003012 ORTHO05D002833 1.5e-15 86.7 126 38.9
BcaC01g04697 Brassica carinata HOM05D004904 ORTHO05D002833 2.0e-15 86.3 124 37.9
Aa31LG11G9250 Aethionema arabicum HOM05D004904 ORTHO05D002833 2.6e-15 85.9 121 36.4
BolC3t15792H Brassica oleracea HOM05D004904 ORTHO05D002833 2.6e-15 85.9 134 34.3
Aa31LG3G3270 Aethionema arabicum HOM05D003012 ORTHO05D002833 4.5e-15 85.1 127 37.8
BolC8t51971H Brassica oleracea HOM05D004904 ORTHO05D012458 4.5e-15 85.1 122 35.2
Sp6g07620 Schrenkiella parvula HOM05D004904 ORTHO05D002833 4.5e-15 85.1 125 36.8
C03p34820 Brassica napus HOM05D000042 ORTHO05D000028 5.9e-15 84.7 119 36.1
Thhalv10009624m.g Eutrema salsugineum HOM05D004904 ORTHO05D010762 7.7e-15 84.3 137 35.8
Aa31LG3G3260 Aethionema arabicum HOM05D003012 ORTHO05D002833 1.0e-14 84.0 118 37.3
AL3G46890 Arabidopsis lyrata HOM05D004904 ORTHO05D010762 1.3e-14 83.6 137 35.8
Thhalv10002784m.g Eutrema salsugineum HOM05D004904 ORTHO05D012610 1.7e-14 83.2 136 33.1
Carub.0007s2936 Capsella rubella HOM05D004904 ORTHO05D010762 3.8e-14 82.0 132 36.4
Aa31LG3G3320 Aethionema arabicum HOM05D003012 ORTHO05D002833 5.0e-14 81.6 128 39.1
BcaNung01396 Brassica carinata HOM05D004904 ORTHO05D010762 5.0e-14 81.6 70 50.0
CARHR084960 Cardamine hirsuta HOM05D003012 ORTHO05D002833 5.0e-14 81.6 119 36.1
Carub.0001s4073 Capsella rubella HOM05D003012 ORTHO05D002833 6.5e-14 81.3 130 33.8
Thhalv10029508m.g Eutrema salsugineum HOM05D004904 ORTHO05D002833 6.5e-14 81.3 95 41.1
Aa31LG3G3250 Aethionema arabicum HOM05D003012 ORTHO05D002833 1.4e-13 80.1 130 37.7
Thhalv10000458m.g Eutrema salsugineum HOM05D004904 ORTHO05D012610 1.9e-13 79.7 142 35.2
Carub.0004s0236 Capsella rubella HOM05D003012 ORTHO05D002833 3.2e-13 79.0 138 36.2
C06p30060 Brassica napus HOM05D004904 ORTHO05D012610 4.2e-13 78.6 146 36.3
BolC6t38167H Brassica oleracea HOM05D004904 ORTHO05D012610 4.2e-13 78.6 146 36.3
Thhalv10026508m.g Eutrema salsugineum HOM05D004904 ORTHO05D012610 4.2e-13 78.6 140 31.4
Aa31LG3G3310 Aethionema arabicum HOM05D003012 ORTHO05D002833 7.2e-13 77.8 135 34.8
Thhalv10003328m.g Eutrema salsugineum HOM05D004904 ORTHO05D012610 1.2e-12 77.0 113 39.8
AT2G23142 Arabidopsis thaliana HOM05D003012 ORTHO05D002833 2.1e-12 76.3 115 35.7
A07p27280 Brassica napus HOM05D004904 ORTHO05D012610 2.7e-12 75.9 146 34.9
BraA07t30371Z Brassica rapa HOM05D004904 ORTHO05D012610 2.7e-12 75.9 146 34.9
AL2G29420 Arabidopsis lyrata HOM05D004904 ORTHO05D012993 3.6e-12 75.5 143 35.7
C07p61990 Brassica napus HOM05D004904 ORTHO05D027820 3.6e-12 75.5 145 34.5
C07p62000 Brassica napus HOM05D004904 ORTHO05D027820 3.6e-12 75.5 145 34.5
BolC7t46619H Brassica oleracea HOM05D004904 ORTHO05D027820 3.6e-12 75.5 145 34.5
C06p30120 Brassica napus HOM05D004904 ORTHO05D012610 4.7e-12 75.1 120 37.5
Thhalv10002725m.g Eutrema salsugineum HOM05D004904 ORTHO05D010762 4.7e-12 75.1 134 35.8
BolC2t07254H Brassica oleracea HOM05D004904 ORTHO05D012993 6.1e-12 74.7 111 40.5
BolC6t38173H Brassica oleracea HOM05D004904 ORTHO05D012610 6.1e-12 74.7 145 34.5
A03p36000 Brassica napus HOM05D020264 ORTHO05D033075 1.0e-11 73.9 139 36.0
BraA03t12772Z Brassica rapa HOM05D020264 ORTHO05D033075 1.0e-11 73.9 139 36.0
BolC3t16633H Brassica oleracea HOM05D020264 ORTHO05D033075 1.4e-11 73.6 138 35.5
AL3G46880 Arabidopsis lyrata HOM05D004904 ORTHO05D080488 3.0e-11 72.4 133 33.1
THA.LOC104816435 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 3.9e-11 72.0 135 31.9
C07p62020 Brassica napus HOM05D004904 ORTHO05D012458 5.1e-11 71.6 141 34.0
BraA04t18436Z Brassica rapa HOM05D003012 ORTHO05D002833 5.1e-11 71.6 137 35.8
Thhalv10026501m.g Eutrema salsugineum HOM05D004904 ORTHO05D012458 6.7e-11 71.2 150 32.0
THA.LOC104816438 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 1.1e-10 70.5 135 31.1
Carub.0007s2993 Capsella rubella HOM05D004904 ORTHO05D012993 1.5e-10 70.1 127 35.4
Carub.0007s2995 Capsella rubella HOM05D004904 ORTHO05D012993 1.5e-10 70.1 127 35.4
CARHR102930 Cardamine hirsuta HOM05D004904 ORTHO05D012993 2.0e-10 69.7 140 33.6
BcaB05g25172 Brassica carinata HOM05D011693 ORTHO05D023959 3.3e-10 68.9 136 31.6
BcaC08g45375 Brassica carinata HOM05D004904 ORTHO05D012610 3.3e-10 68.9 115 38.3
A02p22640 Brassica napus HOM05D011693 ORTHO05D040107 3.3e-10 68.9 146 32.9
C07p62010 Brassica napus HOM05D004904 ORTHO05D027820 3.3e-10 68.9 130 33.8
BcaB02g08008 Brassica carinata HOM05D003012 ORTHO05D002833 4.4e-10 68.6 112 37.5
AT5G38440 Arabidopsis thaliana HOM05D003012 ORTHO05D002833 5.7e-10 68.2 112 35.7
CARHR274150 Cardamine hirsuta HOM05D004904 ORTHO05D012993 5.7e-10 68.2 104 34.6
Thhalv10014983m.g Eutrema salsugineum HOM05D004904 ORTHO05D012993 9.7e-10 67.4 152 33.6
A07p27310 Brassica napus HOM05D004904 ORTHO05D012610 2.8e-09 65.9 121 33.9
C07p62040 Brassica napus HOM05D004904 ORTHO05D012458 2.8e-09 65.9 142 32.4
BraA07t30372Z Brassica rapa HOM05D004904 ORTHO05D012610 3.7e-09 65.5 141 31.2
Carub.0003s2793 Capsella rubella HOM05D003012 ORTHO05D002833 3.7e-09 65.5 99 33.3
A09p65560 Brassica napus HOM05D004904 ORTHO05D015396 8.2e-09 64.3 81 44.4
Carub.0001s3122 Capsella rubella HOM05D004904 ORTHO05D018426 1.1e-08 63.9 138 31.2
THA.LOC104816439 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 1.4e-08 63.5 112 36.6
Carub.0006s0330 Capsella rubella HOM05D003012 ORTHO05D002833 1.8e-08 63.2 132 28.8
THA.LOC104816680 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 1.8e-08 63.2 99 37.4
C08p49610 Brassica napus HOM05D004904 ORTHO05D015396 2.4e-08 62.8 81 44.4
unitig_899.g15052 Utricularia gibba HOM05D000256 ORTHO05D000119 9.1e-08 60.8 97 33.0
THA.LOC104816440 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 1.2e-07 60.5 116 34.5
AL1G49150 Arabidopsis lyrata HOM05D004904 ORTHO05D018426 1.5e-07 60.1 146 30.8
BraA02t05833Z Brassica rapa HOM05D012090 ORTHO05D012993 1.5e-07 60.1 104 31.7
FAN10G1492 Fragaria x ananassa HOM05D000256 ORTHO05D000119 2.0e-07 59.7 104 35.6
Thhalv10002162m.g Eutrema salsugineum HOM05D003012 ORTHO05D002833 2.6e-07 59.3 140 27.9
Sp1g10390 Schrenkiella parvula HOM05D003012 ORTHO05D002833 7.7e-07 57.8 102 32.4
Aa31LG3G4420 Aethionema arabicum HOM05D004904 ORTHO05D002833 1.0e-06 57.4 95 30.5
AT5G04347 Arabidopsis thaliana HOM05D003012 ORTHO05D002833 1.3e-06 57.0 136 28.7
FAN06G4947 Fragaria x ananassa HOM05D000256 ORTHO05D000119 1.7e-06 56.6 116 32.8
AT5G04350 Arabidopsis thaliana HOM05D003012 ORTHO05D002833 2.2e-06 56.2 110 30.9
RcHm_v2.0_Chr3g0448331 Rosa chinensis HOM05D000256 ORTHO05D000119 2.2e-06 56.2 104 30.8
AL6G13980 Arabidopsis lyrata HOM05D003012 ORTHO05D002833 3.8e-06 55.5 136 28.7
C03p43640 Brassica napus HOM05D020264 ORTHO05D103220 6.5e-06 54.7 103 36.9
Thhalv10023169m.g Eutrema salsugineum HOM05D004904 ORTHO05D012610 8.5e-06 54.3 53 49.1


User provided reference genes

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