Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p07380 Brassica napus HOM05D002582 ORTHO05D002781 4.6e-49 197.6 100 100.0
BcaC06g32587 Brassica carinata HOM05D002582 ORTHO05D002781 3.2e-18 95.1 61 85.2
BcaB06g26365 Brassica carinata HOM05D002582 ORTHO05D002781 7.1e-18 94.0 61 83.6
BcaC06g32329 Brassica carinata HOM05D002582 ORTHO05D002781 2.7e-17 92.0 61 82.0
C09p70660 Brassica napus HOM05D002582 ORTHO05D002781 2.7e-17 92.0 61 82.0
BolC9t59822H Brassica oleracea HOM05D002582 ORTHO05D002781 2.7e-17 92.0 61 82.0
BcaB01g05735 Brassica carinata HOM05D002582 ORTHO05D002781 1.0e-16 90.1 61 80.3
AL6G16220 Arabidopsis lyrata HOM05D002582 ORTHO05D002781 1.3e-16 89.7 61 78.7
AT5G06220 Arabidopsis thaliana HOM05D002582 ORTHO05D002781 1.3e-16 89.7 61 78.7
A10p30250 Brassica napus HOM05D002582 ORTHO05D002781 1.3e-16 89.7 104 53.8
BcaB01g05984 Brassica carinata HOM05D002582 ORTHO05D002781 3.0e-16 88.6 61 78.7
A03p02620 Brassica napus HOM05D002582 ORTHO05D002781 3.0e-16 88.6 61 78.7
C03p03010 Brassica napus HOM05D002582 ORTHO05D002781 3.0e-16 88.6 61 78.7
BolC3t12851H Brassica oleracea HOM05D002582 ORTHO05D002781 3.0e-16 88.6 61 78.7
BraA03t09623Z Brassica rapa HOM05D002582 ORTHO05D002781 3.0e-16 88.6 61 78.7
CARHR206920 Cardamine hirsuta HOM05D002582 ORTHO05D002781 3.0e-16 88.6 61 77.0
BraA10t45063Z Brassica rapa HOM05D002582 ORTHO05D002781 3.9e-16 88.2 61 78.7
Carub.0006s0509 Capsella rubella HOM05D002582 ORTHO05D002781 3.9e-16 88.2 61 77.0
Aa31sc2197G10 Aethionema arabicum HOM05D002582 ORTHO05D002781 5.1e-16 87.8 61 75.4
Thhalv10012627m.g Eutrema salsugineum HOM05D002582 ORTHO05D002781 5.1e-16 87.8 61 77.0
Sp6g36660 Schrenkiella parvula HOM05D002582 ORTHO05D002781 1.9e-15 85.9 61 75.4
BcaB06g25608 Brassica carinata HOM05D002582 ORTHO05D002781 2.5e-15 85.5 61 72.1
BcaC05g29355 Brassica carinata HOM05D002582 ORTHO05D002781 2.5e-15 85.5 61 72.1
A05p37770 Brassica napus HOM05D002582 ORTHO05D002781 2.5e-15 85.5 61 72.1
C05p56390 Brassica napus HOM05D002582 ORTHO05D002781 2.5e-15 85.5 61 72.1
BolC5t34306H Brassica oleracea HOM05D002582 ORTHO05D002781 2.5e-15 85.5 61 72.1
BraA05t22572Z Brassica rapa HOM05D002582 ORTHO05D002781 2.5e-15 85.5 61 72.1
AL3G23110 Arabidopsis lyrata HOM05D002582 ORTHO05D002781 4.3e-15 84.7 61 72.1
THA.LOC104816603 Tarenaya hassleriana HOM05D002582 ORTHO05D002781 4.3e-15 84.7 61 75.4
Sp3g09800 Schrenkiella parvula HOM05D002582 ORTHO05D002781 5.6e-15 84.3 61 70.5
ATR0081G061 Amborella trichopoda HOM05D002582 ORTHO05D002781 7.4e-15 84.0 61 72.1
Carub.0003s1088 Capsella rubella HOM05D002582 ORTHO05D002781 9.6e-15 83.6 61 72.1
Ciclev10011033m.g Citrus clementina HOM05D002582 ORTHO05D002781 9.6e-15 83.6 61 70.5
Duzib093G1566 Durio zibethinus HOM05D002582 ORTHO05D002781 1.3e-14 83.2 61 72.1
CARHR086110 Cardamine hirsuta HOM05D002582 ORTHO05D002781 1.6e-14 82.8 61 70.5
Thhalv10020029m.g Eutrema salsugineum HOM05D002582 ORTHO05D002781 1.6e-14 82.8 61 72.1
Ah.08g210320 Amaranthus hybridus HOM05D002582 ORTHO05D002781 2.1e-14 82.4 93 54.8
DCAR_013417 Daucus carota HOM05D002582 ORTHO05D002781 2.1e-14 82.4 60 75.0
Thecc.05G096300 Theobroma cacao HOM05D002582 ORTHO05D002781 2.1e-14 82.4 61 73.8
AT3G11560 Arabidopsis thaliana HOM05D002582 ORTHO05D002781 2.8e-14 82.0 61 70.5
arahy.Tifrunner.gnm1.ann1.L9F1QW Arachis hypogaea HOM05D002582 ORTHO05D002781 2.8e-14 82.0 59 72.9
arahy.Tifrunner.gnm1.ann1.YV8VHR Arachis hypogaea HOM05D002582 ORTHO05D002781 2.8e-14 82.0 59 72.9
Sc02g0000470 Simmondsia chinensis HOM05D002582 ORTHO05D002781 2.8e-14 82.0 59 74.6
TAR623G1676 Trochodendron aralioides HOM05D002582 ORTHO05D002781 2.8e-14 82.0 61 70.5
AUR62006244 Chenopodium quinoa HOM05D002582 ORTHO05D002781 3.7e-14 81.6 92 53.3
PGR004G1279 Punica granatum HOM05D002582 ORTHO05D002781 3.7e-14 81.6 61 73.8
COL.COLO4_29664 Corchorus olitorius HOM05D002582 ORTHO05D002781 4.8e-14 81.3 61 70.5
Cpa.g.sc104.87 Carica papaya HOM05D002582 ORTHO05D002781 6.2e-14 80.9 61 72.1
Glyma.10G075900 Glycine max HOM05D002582 ORTHO05D002781 6.2e-14 80.9 61 70.5
TAR369G0677 Trochodendron aralioides HOM05D002582 ORTHO05D002781 8.1e-14 80.5 61 68.9
Aa31LG3G4950 Aethionema arabicum HOM05D002582 ORTHO05D002781 1.1e-13 80.1 61 68.9
EL10Ac7g16845 Beta vulgaris HOM05D002582 ORTHO05D002781 1.1e-13 80.1 59 72.9
Eucgr.A02629 Eucalyptus grandis HOM05D002582 ORTHO05D002781 1.1e-13 80.1 61 72.1
Sabra16G0077500 Salix brachista HOM05D002582 ORTHO05D002781 1.1e-13 80.1 61 70.5
Sabra16G0080300 Salix brachista HOM05D002582 ORTHO05D002781 1.1e-13 80.1 61 70.5
GSVIVG01033899001 Vitis vinifera HOM05D002582 ORTHO05D002781 1.1e-13 80.1 59 72.9
CiPaw.10G012900 Carya illinoinensis HOM05D002582 ORTHO05D002781 1.4e-13 79.7 61 70.5
FAN02G2142 Fragaria x ananassa HOM05D002582 ORTHO05D002781 1.4e-13 79.7 59 74.6
Glyma.02G200700 Glycine max HOM05D002582 ORTHO05D002781 1.4e-13 79.7 61 68.9
Phvul.007G230450 Phaseolus vulgaris HOM05D002582 ORTHO05D002781 1.4e-13 79.7 61 68.9
Potri.016G074900 Populus trichocarpa HOM05D002582 ORTHO05D002781 1.4e-13 79.7 61 68.9
CANSAT64G0891 Cannabis sativa HOM05D002582 ORTHO05D002781 1.8e-13 79.3 61 70.5
Cfa016652 Carpinus fangiana HOM05D002582 ORTHO05D002781 1.8e-13 79.3 61 70.5
Haze_19658 Corylus avellana HOM05D002582 ORTHO05D002781 1.8e-13 79.3 61 70.5
Lalb_Chr06g0172521 Lupinus albus HOM05D002582 ORTHO05D002781 1.8e-13 79.3 59 69.5
MD12G1031800 Malus domestica HOM05D002582 ORTHO05D002781 1.8e-13 79.3 61 72.1
Aqoxy2G01049 Aquilegia oxysepala HOM05D002582 ORTHO05D002781 2.4e-13 79.0 61 67.2
CAN.G397.91 Capsicum annuum HOM05D002582 ORTHO05D002781 2.4e-13 79.0 59 69.5
AUR62028482 Chenopodium quinoa HOM05D002582 ORTHO05D002781 3.1e-13 78.6 59 71.2
FvH4_6g19540 Fragaria vesca HOM05D002582 ORTHO05D002781 3.1e-13 78.6 59 72.9
FAN05G0212 Fragaria x ananassa HOM05D002582 ORTHO05D002781 3.1e-13 78.6 59 72.9
FAN05G2352 Fragaria x ananassa HOM05D002582 ORTHO05D002781 3.1e-13 78.6 59 72.9
FAN09G2395 Fragaria x ananassa HOM05D002582 ORTHO05D002781 3.1e-13 78.6 59 72.9
FAN14G0204 Fragaria x ananassa HOM05D002582 ORTHO05D002781 3.1e-13 78.6 59 72.9
Gohir.D04G096400 Gossypium hirsutum HOM05D002582 ORTHO05D002781 3.1e-13 78.6 61 70.5
Gorai.009G399100 Gossypium raimondii HOM05D002582 ORTHO05D002781 3.1e-13 78.6 61 70.5
MD14G1032100 Malus domestica HOM05D002582 ORTHO05D002781 3.1e-13 78.6 59 72.9
RcHm_v2.0_Chr3g0474881 Rosa chinensis HOM05D002582 ORTHO05D002781 3.1e-13 78.6 59 72.9
Ca_25956_v3 Cicer arietinum L. HOM05D002582 ORTHO05D002781 4.0e-13 78.2 59 69.5
Cc06_g06230 Coffea canephora HOM05D002582 ORTHO05D002781 4.0e-13 78.2 61 70.5
Manes.08G028900 Manihot esculenta HOM05D002582 ORTHO05D002781 4.0e-13 78.2 61 68.9
Nitab4.5_0000573g0120 Nicotiana tabacum HOM05D002582 ORTHO05D002781 4.0e-13 78.2 59 69.5
Oeu010762.1 Olea europaea HOM05D002582 ORTHO05D002781 4.0e-13 78.2 61 70.5
Oeu017695.2 Olea europaea HOM05D002582 ORTHO05D002781 4.0e-13 78.2 61 70.5
Peaxi162Scf00013g01411 Petunia axillaris HOM05D002582 ORTHO05D002781 4.0e-13 78.2 59 69.5
QL07p038072 Quercus lobata HOM05D002582 ORTHO05D002781 4.0e-13 78.2 61 68.9
MELO3C024566.2 Cucumis melo HOM05D002582 ORTHO05D002781 5.3e-13 77.8 61 70.5
Dinv31725 Davidia involucrata HOM05D002582 ORTHO05D002781 5.3e-13 77.8 59 71.2
ECA233G2523 Erigeron canadensis HOM05D002582 ORTHO05D002781 5.3e-13 77.8 59 69.5
TWI77G0235 Tripterygium wilfordii HOM05D002582 ORTHO05D002781 5.3e-13 77.8 59 71.2
unitig_8.g4208 Utricularia gibba HOM05D002582 ORTHO05D002781 5.3e-13 77.8 59 67.8
VMungo0720G2392 Vigna mungo HOM05D002582 ORTHO05D002781 5.3e-13 77.8 59 66.1
CsaV3_6G040880 Cucumis sativus L. HOM05D002582 ORTHO05D002781 6.9e-13 77.4 61 70.5
Migut.J00661 Erythranthe guttata HOM05D002582 ORTHO05D002781 6.9e-13 77.4 61 67.2
Gohir.A04G059778 Gossypium hirsutum HOM05D002582 ORTHO05D002781 6.9e-13 77.4 61 68.9
Lj5g0016358 Lotus japonicus HOM05D002582 ORTHO05D002781 6.9e-13 77.4 58 69.0
Os08g0482100 Oryza sativa ssp. japonica HOM05D002582 ORTHO05D002781 6.9e-13 77.4 61 67.2
Psat6g080080 Pisum sativum HOM05D002582 ORTHO05D002781 6.9e-13 77.4 58 67.2
Potri.006G208300 Populus trichocarpa HOM05D002582 ORTHO05D002781 6.9e-13 77.4 61 68.9
TWI74G1463 Tripterygium wilfordii HOM05D002582 ORTHO05D002781 6.9e-13 77.4 59 69.5
Atru.chr8.1437 Acer truncatum HOM05D002582 ORTHO05D002781 1.2e-12 76.6 61 65.6
HanXRQChr09g0238341 Helianthus annuus HOM05D002582 ORTHO05D002781 1.2e-12 76.6 59 66.1
Medtr1g058390 Medicago truncatula HOM05D002582 ORTHO05D002781 1.2e-12 76.6 59 64.4
Prupe.7G100800 Prunus persica HOM05D002582 ORTHO05D002781 1.2e-12 76.6 59 71.2
CSS0000696 Camellia sinensis var. sinensis HOM05D002582 ORTHO05D002781 1.5e-12 76.3 61 68.9
CSS0012526 Camellia sinensis var. sinensis HOM05D002582 ORTHO05D002781 1.5e-12 76.3 61 68.9
Actinidia05397 Actinidia chinensis HOM05D002582 ORTHO05D002781 2.0e-12 75.9 59 69.5
MSTRG.19280 Avicennia marina HOM05D002582 ORTHO05D002781 2.0e-12 75.9 59 67.8
Zm00001eb033410 Zea mays HOM05D002582 ORTHO05D002781 2.0e-12 75.9 61 63.9
ClCG04G010240 Citrullus lanatus HOM05D002582 ORTHO05D002781 2.6e-12 75.5 61 68.9
Solyc09g010280.3 Solanum lycopersicum HOM05D002582 ORTHO05D002781 2.6e-12 75.5 59 66.1
Sopen09g004980 Solanum pennellii HOM05D002582 ORTHO05D002781 2.6e-12 75.5 59 66.1
vmacro14777 Vaccinium macrocarpon HOM05D002582 ORTHO05D002781 2.6e-12 75.5 59 69.5
Ca_09028_v3 Cicer arietinum L. HOM05D002582 ORTHO05D002781 3.4e-12 75.1 61 63.9
Lalb_Chr02g0154741 Lupinus albus HOM05D002582 ORTHO05D002781 3.4e-12 75.1 61 62.3
Sabra06G0160200 Salix brachista HOM05D002582 ORTHO05D002781 3.4e-12 75.1 61 65.6
HPP92_013111 Vanilla planifolia HOM05D002582 ORTHO05D002781 3.4e-12 75.1 61 63.9
HPP92_013132 Vanilla planifolia HOM05D002582 ORTHO05D002781 3.4e-12 75.1 61 63.9
MSTRG.5869 Avicennia marina HOM05D002582 ORTHO05D002781 5.8e-12 74.3 58 67.2
Nn6g34803 Nelumbo nucifera HOM05D002582 ORTHO05D002781 5.8e-12 74.3 61 63.9
Rhsim01G0258700 Rhododendron simsii HOM05D002582 ORTHO05D002781 5.8e-12 74.3 59 67.8
TPR.G40320 Trifolium pratense HOM05D002582 ORTHO05D002781 5.8e-12 74.3 59 62.7
DCAR_007764 Daucus carota HOM05D002582 ORTHO05D002781 1.0e-11 73.6 59 66.1
Lsat_1_v5_gn_6_35600 Lactuca sativa HOM05D002582 ORTHO05D002781 1.0e-11 73.6 70 57.1
Pp3c14_11120 Physcomitrium patens HOM05D002582 ORTHO05D002781 1.0e-11 73.6 59 66.1
Pp3c22_13150 Physcomitrium patens HOM05D002582 ORTHO05D002781 1.3e-11 73.2 59 64.4
Sed0021820 Sechium edule HOM05D002582 ORTHO05D002781 1.3e-11 73.2 61 65.6
Medtr7g105340 Medicago truncatula HOM05D002582 ORTHO05D002781 2.2e-11 72.4 61 62.3
Psat3g031120 Pisum sativum HOM05D002582 ORTHO05D002781 2.2e-11 72.4 61 59.0
CDE04G1506 Ceratophyllum demersum HOM05D002582 ORTHO05D002781 2.9e-11 72.0 59 64.4
SGA_v2.0_scaffold13G06691 Striga asiatica HOM05D002582 ORTHO05D002781 2.9e-11 72.0 59 64.4
Sed0005359 Sechium edule HOM05D002582 ORTHO05D002781 1.1e-10 70.1 62 66.1
PSO339G0972 Papaver somniferum HOM05D002582 ORTHO05D002781 1.4e-10 69.7 61 60.7
PSO801G0394 Papaver somniferum HOM05D002582 ORTHO05D002781 1.4e-10 69.7 61 60.7
ECA248G1278 Erigeron canadensis HOM05D002582 ORTHO05D002781 3.2e-10 68.6 59 61.0
SMO364G0473 Selaginella moellendorffii HOM05D002582 ORTHO05D002781 3.2e-10 68.6 59 59.3
TPR.G23311 Trifolium pratense HOM05D002582 ORTHO05D002781 9.3e-10 67.0 61 55.7
Lj2A144G24 Lonicera japonica HOM05D002582 ORTHO05D002781 6.0e-09 64.3 79 51.9
TAR624G0959 Trochodendron aralioides HOM05D002582 ORTHO05D002781 1.1e-07 60.1 80 40.0
Actinidia32708 Actinidia chinensis HOM05D002582 ORTHO05D002781 3.3e-07 58.5 78 37.2
ATR0705G167 Amborella trichopoda HOM05D002582 ORTHO05D002781 7.4e-07 57.4 59 44.1
BcaB05g23614 Brassica carinata HOM05D002582 ORTHO05D002781 7.4e-07 57.4 48 64.6
GSVIVG01034251001 Vitis vinifera HOM05D002582 ORTHO05D002781 7.4e-07 57.4 61 44.3
Prupe.3G063100 Prunus persica HOM05D002582 ORTHO05D002781 9.6e-07 57.0 61 42.6
GSVIVG01017037001 Vitis vinifera HOM05D002582 ORTHO05D002781 1.6e-06 56.2 61 44.3
MD17G1187700 Malus domestica HOM05D002582 ORTHO05D002781 2.1e-06 55.8 79 35.4
Sabra16G0077100 Salix brachista HOM05D002582 ORTHO05D002781 2.1e-06 55.8 40 72.5
CSS0033359 Camellia sinensis var. sinensis HOM05D002582 ORTHO05D002781 2.8e-06 55.5 92 33.7
CANSAT56G2264 Cannabis sativa HOM05D002582 ORTHO05D002781 2.8e-06 55.5 91 37.4
Ciclev10025016m.g Citrus clementina HOM05D002582 ORTHO05D002781 2.8e-06 55.5 61 42.6
Atru.chr1.3465 Acer truncatum HOM05D002582 ORTHO05D002781 3.7e-06 55.1 61 45.9
Cfa002116 Carpinus fangiana HOM05D002582 ORTHO05D002781 3.7e-06 55.1 80 37.5
Solyc06g066550.3 Solanum lycopersicum HOM05D002582 ORTHO05D002781 3.7e-06 55.1 61 44.3
Sopen06g024820 Solanum pennellii HOM05D002582 ORTHO05D002781 3.7e-06 55.1 61 44.3
PGSC0003DMG400016500 Solanum tuberosum HOM05D002582 ORTHO05D002781 3.7e-06 55.1 61 44.3
DCAR_007577 Daucus carota HOM05D002582 ORTHO05D002781 4.8e-06 54.7 61 36.1
Gohir.D05G132600 Gossypium hirsutum HOM05D002582 ORTHO05D002781 4.8e-06 54.7 61 41.0
Gorai.009G136300 Gossypium raimondii HOM05D002582 ORTHO05D002781 4.8e-06 54.7 61 41.0
Hma1.2p1_1689F.1_g297660 Hydrangea macrophylla HOM05D002582 ORTHO05D002781 4.8e-06 54.7 61 39.3
Duzib235G0796 Durio zibethinus HOM05D002582 ORTHO05D002781 6.2e-06 54.3 61 41.0
PGR142G1576 Punica granatum HOM05D002582 ORTHO05D002781 6.2e-06 54.3 80 35.0
RcHm_v2.0_Chr2g0139611 Rosa chinensis HOM05D002582 ORTHO05D002781 6.2e-06 54.3 80 33.8
Cc04_g02790 Coffea canephora HOM05D002582 ORTHO05D002781 8.2e-06 53.9 59 42.4
TWI12G1196 Tripterygium wilfordii HOM05D002582 ORTHO05D002781 8.2e-06 53.9 61 44.3


User provided reference genes

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