Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p06870 Brassica napus HOM05D004337 ORTHO05D005422 0.0e+00 1212.6 598 100.0
BraA09t36334Z Brassica rapa HOM05D004337 ORTHO05D005422 0.0e+00 1191.4 598 98.5
BcaB04g19858 Brassica carinata HOM05D004337 ORTHO05D005422 0.0e+00 1183.7 598 97.7
BolC9t53677H Brassica oleracea HOM05D004337 ORTHO05D005422 0.0e+00 1159.8 600 96.2
C09p07600 Brassica napus HOM05D004337 ORTHO05D005422 0.0e+00 1157.9 599 96.3
BcaC04g23504 Brassica carinata HOM05D004337 ORTHO05D005422 0.0e+00 1156.7 601 95.8
Thhalv10003872m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 0.0e+00 1136.3 601 94.2
C07p43970 Brassica napus HOM05D004337 ORTHO05D005422 0.0e+00 1126.7 600 92.7
A06p34530 Brassica napus HOM05D004337 ORTHO05D005422 0.0e+00 1126.3 599 93.3
Sp2g23620 Schrenkiella parvula HOM05D004337 ORTHO05D005422 0.0e+00 1125.9 600 93.2
BraA06t26382Z Brassica rapa HOM05D004337 ORTHO05D005422 0.0e+00 1122.5 599 93.0
BolC7t44925H Brassica oleracea HOM05D004337 ORTHO05D005422 0.0e+00 1120.9 598 92.6
AT5G23575 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 0.0e+00 1119.0 598 92.1
AL6G34865 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 0.0e+00 1114.0 598 92.5
CARHR189960 Cardamine hirsuta HOM05D004337 ORTHO05D005422 0.0e+00 1097.8 599 91.3
Carub.0006s2135 Capsella rubella HOM05D004337 ORTHO05D005422 0.0e+00 1088.9 598 90.0
Aa31LG11G2980 Aethionema arabicum HOM05D004337 ORTHO05D005422 8.2e-303 1043.1 599 86.1
AL6G19170 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 2.5e-296 1021.5 598 83.8
CARHR204490 Cardamine hirsuta HOM05D004337 ORTHO05D005422 2.8e-295 1018.1 604 83.4
Carub.0006s0742 Capsella rubella HOM05D004337 ORTHO05D005422 2.4e-294 1015.0 601 83.0
Thhalv10013045m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 4.5e-293 1010.7 604 83.1
BraA10t44874Z Brassica rapa HOM05D004337 ORTHO05D005422 5.0e-292 1007.3 606 82.7
BolC9t59595H Brassica oleracea HOM05D004337 ORTHO05D005422 2.1e-290 1001.9 606 81.8
C09p68510 Brassica napus HOM05D004337 ORTHO05D005422 3.6e-290 1001.1 605 82.0
BcaB08g37252 Brassica carinata HOM05D004337 ORTHO05D005422 3.9e-289 997.7 609 81.6
Aa31LG3G18040 Aethionema arabicum HOM05D004337 ORTHO05D005422 5.1e-289 997.3 594 83.3
A10p28250 Brassica napus HOM05D004337 ORTHO05D005422 6.9e-286 986.9 574 84.0
THA.LOC104819366 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 8.5e-276 953.4 572 81.5
THA.LOC104818397 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 1.6e-274 949.1 602 78.7
Sp6g34400 Schrenkiella parvula HOM05D004337 ORTHO05D005422 1.8e-270 935.6 607 78.1
AT5G08500 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 1.5e-267 926.0 520 86.9
MD15G1140200 Malus domestica HOM05D004337 ORTHO05D005422 1.7e-263 912.5 604 74.2
Potri.004G134500 Populus trichocarpa HOM05D004337 ORTHO05D005422 7.0e-262 907.1 570 77.0
Manes.12G081000 Manihot esculenta HOM05D004337 ORTHO05D005422 1.2e-261 906.4 598 74.4
Gohir.A05G375100 Gossypium hirsutum HOM05D004337 ORTHO05D005422 2.7e-261 905.2 572 76.4
Gohir.D04G040600 Gossypium hirsutum HOM05D004337 ORTHO05D005422 3.5e-261 904.8 571 76.7
Gorai.012G045800 Gossypium raimondii HOM05D004337 ORTHO05D005422 3.5e-261 904.8 571 76.7
Potri.T045800 Populus trichocarpa HOM05D004337 ORTHO05D005422 5.9e-261 904.0 570 76.8
CiPaw.15G184900 Carya illinoinensis HOM05D004337 ORTHO05D005422 7.7e-261 903.7 598 74.1
Sabra04G0083600 Salix brachista HOM05D004337 ORTHO05D005422 7.7e-261 903.7 598 73.4
TAR376G0777 Trochodendron aralioides HOM05D004337 ORTHO05D005422 7.7e-261 903.7 601 72.9
Prupe.4G286100 Prunus persica HOM05D004337 ORTHO05D005422 1.0e-260 903.3 600 74.5
GSVIVG01000243001 Vitis vinifera HOM05D004337 ORTHO05D005422 1.0e-260 903.3 601 74.4
Potri.018G137500 Populus trichocarpa HOM05D004337 ORTHO05D005422 1.7e-260 902.5 570 76.7
Solyc05g056350.3 Solanum lycopersicum HOM05D004337 ORTHO05D005422 1.7e-260 902.5 603 72.5
Sopen05g034740 Solanum pennellii HOM05D004337 ORTHO05D005422 1.7e-260 902.5 594 73.1
Thecc.01G146600 Theobroma cacao HOM05D004337 ORTHO05D005422 2.2e-260 902.1 571 75.7
AL6G18970 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.1e-259 899.8 892 55.9
Ciclev10025224m.g Citrus clementina HOM05D004337 ORTHO05D005422 3.2e-259 898.3 570 75.1
Gohir.A12G002300 Gossypium hirsutum HOM05D004337 ORTHO05D005422 9.4e-259 896.7 570 75.6
Cfa020919 Carpinus fangiana HOM05D004337 ORTHO05D005422 2.1e-258 895.6 600 73.5
PGSC0003DMG400023451 Solanum tuberosum HOM05D004337 ORTHO05D005422 4.7e-258 894.4 603 72.3
unitig_736.g22365 Utricularia gibba HOM05D004337 ORTHO05D005422 4.7e-258 894.4 581 74.2
Zm00001eb082160 Zea mays HOM05D004337 ORTHO05D005422 1.8e-257 892.5 580 73.8
QL10p037473 Quercus lobata HOM05D004337 ORTHO05D005422 2.3e-257 892.1 575 75.3
Hma1.2p1_0296F.1_g116900 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 3.0e-257 891.7 569 75.9
FvH4_1g25770 Fragaria vesca HOM05D004337 ORTHO05D005422 5.2e-257 891.0 576 75.5
CANSAT54G2432 Cannabis sativa HOM05D004337 ORTHO05D005422 6.8e-257 890.6 576 74.7
Dinv09624 Davidia involucrata HOM05D004337 ORTHO05D005422 6.8e-257 890.6 570 75.8
Gorai.008G001400 Gossypium raimondii HOM05D004337 ORTHO05D005422 8.8e-257 890.2 577 74.7
Atru.chr3.1466 Acer truncatum HOM05D004337 ORTHO05D005422 3.4e-256 888.3 579 74.3
Actinidia36582 Actinidia chinensis HOM05D004337 ORTHO05D005422 4.4e-256 887.9 604 72.4
arahy.Tifrunner.gnm1.ann1.X1BSDH Arachis hypogaea HOM05D004337 ORTHO05D005422 5.7e-256 887.5 603 72.8
CAN.G1156.26 Capsicum annuum HOM05D004337 ORTHO05D005422 7.5e-256 887.1 567 75.1
MELO3C003282.2 Cucumis melo HOM05D004337 ORTHO05D005422 1.3e-255 886.3 598 72.7
FAN28G1720 Fragaria x ananassa HOM05D004337 ORTHO05D005422 3.7e-255 884.8 623 71.3
MSTRG.23236 Avicennia marina HOM05D004337 ORTHO05D005422 4.9e-255 884.4 573 73.8
Nitab4.5_0000496g0240 Nicotiana tabacum HOM05D004337 ORTHO05D005422 4.9e-255 884.4 553 76.3
Aqoxy5G01850 Aquilegia oxysepala HOM05D004337 ORTHO05D005422 8.3e-255 883.6 577 74.0
MBI06_g32147_MAGBIO Magnolia biondii HOM05D004337 ORTHO05D005422 1.4e-254 882.9 553 75.6
PGR119G0424 Punica granatum HOM05D004337 ORTHO05D005422 1.4e-254 882.9 574 76.3
RcHm_v2.0_Chr3g0484771 Rosa chinensis HOM05D004337 ORTHO05D005422 1.4e-254 882.9 575 74.6
FAN23G1824 Fragaria x ananassa HOM05D004337 ORTHO05D005422 1.8e-254 882.5 623 71.1
Lalb_Chr12g0202711 Lupinus albus HOM05D004337 ORTHO05D005422 1.8e-254 882.5 600 72.2
EL10Ac4g09743 Beta vulgaris HOM05D004337 ORTHO05D005422 3.1e-254 881.7 589 73.0
FAN19G0301 Fragaria x ananassa HOM05D004337 ORTHO05D005422 4.1e-254 881.3 593 73.5
Lalb_Chr07g0183961 Lupinus albus HOM05D004337 ORTHO05D005422 4.1e-254 881.3 600 72.2
FAN26G1467 Fragaria x ananassa HOM05D004337 ORTHO05D005422 5.4e-254 880.9 623 70.9
CsaV3_4G030000 Cucumis sativus L. HOM05D004337 ORTHO05D005422 7.0e-254 880.6 570 74.7
Peaxi162Scf00353g00735 Petunia axillaris HOM05D004337 ORTHO05D005422 7.0e-254 880.6 576 74.1
SGA_v2.0_scaffold12G06278 Striga asiatica HOM05D004337 ORTHO05D005422 2.7e-253 878.6 593 73.0
Lsat_1_v5_gn_2_40441 Lactuca sativa HOM05D004337 ORTHO05D005422 3.5e-253 878.2 599 71.0
Oeu046358.1 Olea europaea HOM05D004337 ORTHO05D005422 3.5e-253 878.2 598 71.7
ECA238G0122 Erigeron canadensis HOM05D004337 ORTHO05D005422 7.7e-253 877.1 601 72.2
Oeu054207.1 Olea europaea HOM05D004337 ORTHO05D005422 1.0e-252 876.7 592 72.1
PSO761G0180 Papaver somniferum HOM05D004337 ORTHO05D005422 1.3e-252 876.3 596 71.8
Os04g0441900 Oryza sativa ssp. japonica HOM05D004337 ORTHO05D005422 2.3e-252 875.5 554 75.1
Hund21761 Selenicereus undatus HOM05D004337 ORTHO05D005422 2.9e-252 875.2 570 74.2
Psat5g057120 Pisum sativum HOM05D004337 ORTHO05D005422 3.8e-252 874.8 594 72.7
PSO210G2848 Papaver somniferum HOM05D004337 ORTHO05D005422 5.0e-252 874.4 605 71.1
Nitab4.5_0004764g0030 Nicotiana tabacum HOM05D004337 ORTHO05D005422 8.6e-252 873.6 558 75.6
TPR.G7800 Trifolium pratense HOM05D004337 ORTHO05D005422 8.6e-252 873.6 602 71.4
VMungo1309G0234 Vigna mungo HOM05D004337 ORTHO05D005422 8.6e-252 873.6 603 72.6
Zm00001eb422980 Zea mays HOM05D004337 ORTHO05D005422 4.3e-251 871.3 579 72.4
COL.COLO4_33529 Corchorus olitorius HOM05D004337 ORTHO05D005422 7.2e-251 870.5 570 74.7
Eucgr.I00018 Eucalyptus grandis HOM05D004337 ORTHO05D005422 3.6e-250 868.2 569 74.9
Glyma.04G203800 Glycine max HOM05D004337 ORTHO05D005422 3.6e-250 868.2 600 72.3
Migut.H02542 Erythranthe guttata HOM05D004337 ORTHO05D005422 4.7e-250 867.8 581 71.9
Sc16g0009860 Simmondsia chinensis HOM05D004337 ORTHO05D005422 4.7e-250 867.8 553 74.7
Sed0025757 Sechium edule HOM05D004337 ORTHO05D005422 6.1e-250 867.5 570 73.2
Glyma.06G161400 Glycine max HOM05D004337 ORTHO05D005422 1.8e-249 865.9 586 73.5
Medtr3g098210 Medicago truncatula HOM05D004337 ORTHO05D005422 1.8e-249 865.9 603 71.0
Phvul.009G159800 Phaseolus vulgaris HOM05D004337 ORTHO05D005422 2.3e-249 865.5 605 71.9
ATR1089G072 Amborella trichopoda HOM05D004337 ORTHO05D005422 1.2e-248 863.2 573 72.6
Actinidia19947 Actinidia chinensis HOM05D004337 ORTHO05D005422 2.6e-248 862.1 570 73.7
AUR62006971 Chenopodium quinoa HOM05D004337 ORTHO05D005422 3.4e-248 861.7 621 68.9
Lj1g0000957 Lotus japonicus HOM05D004337 ORTHO05D005422 4.4e-248 861.3 598 71.1
TWI75G1462 Tripterygium wilfordii HOM05D004337 ORTHO05D005422 5.7e-248 860.9 574 71.6
AUR62000615 Chenopodium quinoa HOM05D004337 ORTHO05D005422 1.7e-247 859.4 621 68.8
Ca_17042_v3 Cicer arietinum L. HOM05D004337 ORTHO05D005422 1.7e-247 859.4 598 70.4
Oeu017633.3 Olea europaea HOM05D004337 ORTHO05D005422 2.2e-247 859.0 570 72.3
Rhsim10G0124700 Rhododendron simsii HOM05D004337 ORTHO05D005422 4.6e-245 851.3 705 62.6
SGA_v2.0_scaffold51G18842 Striga asiatica HOM05D004337 ORTHO05D005422 1.3e-244 849.7 600 71.0
HPP92_009218 Vanilla planifolia HOM05D004337 ORTHO05D005422 2.3e-244 849.0 603 69.5
arahy.Tifrunner.gnm1.ann1.397MFZ Arachis hypogaea HOM05D004337 ORTHO05D005422 6.6e-244 847.4 617 69.2
Nn5g27210 Nelumbo nucifera HOM05D004337 ORTHO05D005422 2.5e-243 845.5 548 74.6
HanXRQChr10g0285831 Helianthus annuus HOM05D004337 ORTHO05D005422 3.6e-242 841.6 533 74.7
Lj4A821G42 Lonicera japonica HOM05D004337 ORTHO05D005422 1.0e-241 840.1 554 74.0
Peaxi162Scf00651g00114 Petunia axillaris HOM05D004337 ORTHO05D005422 9.8e-240 833.6 601 69.1
DCAR_009619 Daucus carota HOM05D004337 ORTHO05D005422 4.7e-234 814.7 611 67.6
SMO116G0204 Selaginella moellendorffii HOM05D004337 ORTHO05D005422 3.0e-228 795.4 542 69.9
Dinv10851 Davidia involucrata HOM05D004337 ORTHO05D005422 1.5e-227 793.1 527 74.2
Mapoly0020s0073 Marchantia polymorpha HOM05D004337 ORTHO05D005422 2.0e-224 782.7 583 66.7
CSS0021638 Camellia sinensis var. sinensis HOM05D004337 ORTHO05D005422 2.1e-218 762.7 498 75.1
vmacro12739 Vaccinium macrocarpon HOM05D004337 ORTHO05D005422 4.0e-217 758.4 935 46.7
Pp3c5_10010 Physcomitrium patens HOM05D004337 ORTHO05D005422 3.4e-208 728.8 604 60.1
Gohir.D12G002000 Gossypium hirsutum HOM05D004337 ORTHO05D005422 2.1e-194 682.9 570 60.9
Duzib264G1201 Durio zibethinus HOM05D004337 ORTHO05D005422 4.5e-192 675.2 571 60.8
Ah.06g188230 Amaranthus hybridus HOM05D004337 ORTHO05D005422 6.5e-191 671.4 542 63.7
CBR_g44530 Chara braunii HOM05D004337 ORTHO05D005422 2.1e-189 666.4 566 57.2
Cc00_g00820 Coffea canephora HOM05D004337 ORTHO05D005422 6.7e-188 661.4 401 78.6
AL6G18990 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.3e-186 657.1 435 78.9
CDE05G2996 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 1.2e-181 640.6 469 65.5
Haze_19353 Corylus avellana HOM05D004337 ORTHO05D005422 2.2e-162 576.6 342 83.3
AL6G19200 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.6e-152 543.9 444 69.1
Cre09.g397900 Chlamydomonas reinhardtii HOM05D004337 ORTHO05D005422 7.7e-152 541.6 566 49.6
SHI38349 Sapria himalayana HOM05D004337 ORTHO05D005422 2.7e-149 533.1 422 65.2
ClCG04G002690 Citrullus lanatus HOM05D004337 ORTHO05D005422 2.3e-132 476.9 308 76.3
MCO10G243 Micromonas commoda HOM05D004337 ORTHO05D005422 4.7e-117 426.0 346 58.7
Haze_27034 Corylus avellana HOM05D004337 ORTHO05D005422 1.1e-105 388.3 450 44.4
Cfa024513 Carpinus fangiana HOM05D004337 ORTHO05D005422 8.9e-100 368.6 522 39.1
PRCOL_00006172 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 2.1e-96 357.5 473 41.9
AL6G19020 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 8.1e-85 318.9 220 73.2
Cpa.g.sc3593.1 Carica papaya HOM05D004337 ORTHO05D005422 3.3e-78 297.0 176 80.7
Cpa.g.sc138.38 Carica papaya HOM05D004337 ORTHO05D005422 5.6e-78 296.2 247 61.1
MCO07G426 Micromonas commoda HOM05D004337 ORTHO05D005422 3.2e-73 280.4 417 39.3
Haze_19352 Corylus avellana HOM05D004337 ORTHO05D005422 7.4e-70 269.2 236 57.2
SalBow8G1257 Salvia bowleyana HOM05D004337 ORTHO05D005422 9.0e-68 262.3 229 56.3
SalBow8G3722 Salvia bowleyana HOM05D004337 ORTHO05D005422 9.0e-68 262.3 229 56.3
PRCOL_00005640 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 3.6e-64 250.4 362 35.6
Cc00_g00810 Coffea canephora HOM05D004337 ORTHO05D005422 3.9e-63 246.9 171 66.7
ClCG04G002680 Citrullus lanatus HOM05D004337 ORTHO05D005422 9.4e-57 225.7 161 65.2
HPP92_009290 Vanilla planifolia HOM05D004337 ORTHO05D005422 4.8e-45 186.8 228 46.9
CDE05G3583 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 2.6e-43 181.0 110 85.5
BcaC04g21668 Brassica carinata HOM05D004337 ORTHO05D021976 4.4e-30 137.1 160 50.0
C09p29160 Brassica napus HOM05D004337 ORTHO05D021976 7.5e-30 136.3 156 50.6
Hma1.2p1_0641F.1_g194250 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 2.4e-28 131.3 72 83.3
Psat3g077400 Pisum sativum HOM05D004337 ORTHO05D005422 3.6e-24 117.5 141 46.1
Hma1.2p1_0641F.1_g194230 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 7.3e-17 93.2 105 52.4
SEGI_12766 Sequoiadendron giganteum HOM05D004337 ORTHO05D005422 5.2e-15 87.0 43 86.0
CDE05G0837 Ceratophyllum demersum HOM05D004337 ORTHO05D043897 9.8e-14 82.8 77 54.5
AUR62044487 Chenopodium quinoa HOM05D004337 ORTHO05D021976 1.8e-12 78.6 49 69.4
AUR62044516 Chenopodium quinoa HOM05D004337 ORTHO05D021976 1.8e-12 78.6 49 69.4
SHI11402 Sapria himalayana HOM05D000039 ORTHO05D006865 7.8e-11 73.2 48 64.6
AUR62038356 Chenopodium quinoa HOM05D001477 ORTHO05D021976 8.6e-10 69.7 42 73.8
CARHR148430 Cardamine hirsuta HOM05D004337 ORTHO05D116339 6.2e-08 63.5 51 70.6


User provided reference genes

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