Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p06550 Brassica napus HOM05D005085 ORTHO05D006135 0.0e+00 1510.0 735 100.0
BraA09t36300Z Brassica rapa HOM05D005085 ORTHO05D006135 0.0e+00 1502.6 735 99.5
BcaC04g23536 Brassica carinata HOM05D005085 ORTHO05D006135 0.0e+00 1476.1 734 97.3
BolC9t53643H Brassica oleracea HOM05D005085 ORTHO05D006135 0.0e+00 1476.1 734 97.3
C09p07310 Brassica napus HOM05D005085 ORTHO05D006135 0.0e+00 1474.1 734 97.3
BcaB04g19831 Brassica carinata HOM05D005085 ORTHO05D006135 0.0e+00 1408.7 734 92.1
Sp2g23110 Schrenkiella parvula HOM05D005085 ORTHO05D006135 0.0e+00 1360.9 743 88.6
Carub.0006s2201 Capsella rubella HOM05D005085 ORTHO05D006135 0.0e+00 1355.9 744 88.4
AT5G24260 Arabidopsis thaliana HOM05D005085 ORTHO05D006135 0.0e+00 1349.3 744 87.4
AL6G35670 Arabidopsis lyrata HOM05D005085 ORTHO05D006135 0.0e+00 1338.6 744 86.7
Thhalv10003701m.g Eutrema salsugineum HOM05D005085 ORTHO05D006135 0.0e+00 1321.6 739 86.2
Aa31LG11G3490 Aethionema arabicum HOM05D005085 ORTHO05D006135 0.0e+00 1226.5 746 80.3
THA.LOC104814927 Tarenaya hassleriana HOM05D005085 ORTHO05D006135 0.0e+00 1165.6 746 75.2
GSVIVG01038548001 Vitis vinifera HOM05D005085 ORTHO05D006135 0.0e+00 1099.0 749 70.8
QL09p009347 Quercus lobata HOM05D005085 ORTHO05D006135 0.0e+00 1089.7 743 70.0
MD07G1288900 Malus domestica HOM05D005085 ORTHO05D006135 0.0e+00 1088.6 746 70.2
CSS0012677 Camellia sinensis var. sinensis HOM05D005085 ORTHO05D006135 0.0e+00 1081.2 745 69.8
Prupe.2G310400 Prunus persica HOM05D005085 ORTHO05D006135 0.0e+00 1080.5 748 70.5
Atru.chr12.2188 Acer truncatum HOM05D005085 ORTHO05D006135 0.0e+00 1080.1 741 69.2
Ciclev10018947m.g Citrus clementina HOM05D005085 ORTHO05D006135 0.0e+00 1078.9 744 69.1
Thecc.03G198500 Theobroma cacao HOM05D005085 ORTHO05D006135 0.0e+00 1077.0 743 69.6
Actinidia08648 Actinidia chinensis HOM05D005085 ORTHO05D006135 0.0e+00 1076.2 745 69.5
Hma1.2p1_0404F.1_g145430 Hydrangea macrophylla HOM05D005085 ORTHO05D006135 0.0e+00 1075.8 747 69.3
COL.COLO4_16758 Corchorus olitorius HOM05D005085 ORTHO05D006135 5.0e-312 1074.7 743 69.7
RcHm_v2.0_Chr1g0380701 Rosa chinensis HOM05D005085 ORTHO05D006135 5.0e-312 1074.7 746 68.9
Haze_00215 Corylus avellana HOM05D005085 ORTHO05D006135 5.0e-312 1073.9 748 68.9
Glyma.06G128600 Glycine max HOM05D005085 ORTHO05D006135 1.0e-311 1073.2 747 68.1
FAN03G3191 Fragaria x ananassa HOM05D005085 ORTHO05D006135 1.0e-311 1072.8 746 69.3
FvH4_7g31630 Fragaria vesca HOM05D005085 ORTHO05D006135 2.0e-311 1072.0 746 69.0
FAN06G1404 Fragaria x ananassa HOM05D005085 ORTHO05D006135 2.0e-311 1072.0 746 69.0
CiPaw.05G196500 Carya illinoinensis HOM05D005085 ORTHO05D006135 5.0e-310 1067.4 744 68.1
CANSAT21G1132 Cannabis sativa HOM05D005085 ORTHO05D006135 8.4e-310 1066.6 743 69.0
VMungo1309G2271 Vigna mungo HOM05D005085 ORTHO05D006135 1.1e-309 1066.2 748 67.9
Lj1g0017393 Lotus japonicus HOM05D005085 ORTHO05D006135 1.4e-309 1065.8 747 68.0
arahy.Tifrunner.gnm1.ann1.T9I2S7 Arachis hypogaea HOM05D005085 ORTHO05D006135 1.9e-309 1065.4 746 68.9
CSS0032106 Camellia sinensis var. sinensis HOM05D005085 ORTHO05D006135 4.2e-309 1064.3 746 69.2
FAN06G4927 Fragaria x ananassa HOM05D005085 ORTHO05D006135 7.2e-309 1063.5 746 69.0
Eucgr.K00374 Eucalyptus grandis HOM05D005085 ORTHO05D006135 9.4e-309 1063.1 745 67.7
Lalb_Chr08g0240261 Lupinus albus HOM05D005085 ORTHO05D006135 9.4e-309 1063.1 747 68.5
arahy.Tifrunner.gnm1.ann1.ZR5QI2 Arachis hypogaea HOM05D005085 ORTHO05D006135 6.1e-308 1060.4 746 68.5
Sabra15G0010900 Salix brachista HOM05D005085 ORTHO05D006135 1.1e-306 1056.2 747 66.9
TWI23G0498 Tripterygium wilfordii HOM05D005085 ORTHO05D006135 1.1e-306 1056.2 745 67.7
TAR375G0122 Trochodendron aralioides HOM05D005085 ORTHO05D006135 2.0e-306 1055.4 745 68.2
FAN01G1488 Fragaria x ananassa HOM05D005085 ORTHO05D006135 3.3e-306 1054.7 746 68.5
Cc02_g01600 Coffea canephora HOM05D005085 ORTHO05D006135 7.4e-306 1053.5 745 67.4
Phvul.009G052800 Phaseolus vulgaris HOM05D005085 ORTHO05D006135 7.4e-306 1053.5 748 67.0
Cfa016227 Carpinus fangiana HOM05D005085 ORTHO05D006135 2.8e-305 1051.6 743 68.1
CsaV3_5G000500 Cucumis sativus L. HOM05D005085 ORTHO05D006135 6.3e-305 1050.4 745 67.7
Potri.015G013400 Populus trichocarpa HOM05D005085 ORTHO05D006135 1.4e-304 1049.3 747 66.9
MELO3C005886.2 Cucumis melo HOM05D005085 ORTHO05D006135 4.1e-304 1047.7 745 67.4
Potri.012G014900 Populus trichocarpa HOM05D005085 ORTHO05D006135 1.2e-303 1046.2 747 67.2
Nitab4.5_0010146g0010 Nicotiana tabacum HOM05D005085 ORTHO05D006135 2.0e-303 1045.4 748 66.3
PGSC0003DMG400009126 Solanum tuberosum HOM05D005085 ORTHO05D006135 3.4e-303 1044.6 750 66.4
Medtr3g091420 Medicago truncatula HOM05D005085 ORTHO05D006135 4.5e-303 1044.3 748 66.0
MSTRG.27029 Avicennia marina HOM05D005085 ORTHO05D006135 7.7e-303 1043.5 743 66.6
CAN.G968.3 Capsicum annuum HOM05D005085 ORTHO05D006135 7.7e-303 1043.5 749 66.0
Sc19g0000870 Simmondsia chinensis HOM05D005085 ORTHO05D006135 1.3e-302 1042.7 747 67.3
Nitab4.5_0005599g0010 Nicotiana tabacum HOM05D005085 ORTHO05D006135 2.9e-302 1041.6 748 65.8
vmacro06534 Vaccinium macrocarpon HOM05D005085 ORTHO05D006135 2.9e-302 1041.6 751 66.6
MBI06_g46249_MAGBIO Magnolia biondii HOM05D005085 ORTHO05D006135 3.8e-302 1041.2 746 67.7
SalBow4G0231 Salvia bowleyana HOM05D005085 ORTHO05D006135 3.8e-302 1041.2 743 66.9
Sopen03g023080 Solanum pennellii HOM05D005085 ORTHO05D006135 1.1e-301 1039.6 749 66.1
Psat5g078640 Pisum sativum HOM05D005085 ORTHO05D006135 4.2e-301 1037.7 748 65.9
Lju170A22T15 Lonicera japonica HOM05D005085 ORTHO05D006135 1.2e-300 1036.2 749 66.6
TAR629G3137 Trochodendron aralioides HOM05D005085 ORTHO05D006135 1.6e-300 1035.8 744 67.2
EL10Ac3g05287 Beta vulgaris HOM05D005085 ORTHO05D006135 4.7e-300 1034.2 743 66.9
Solyc03g083330.3 Solanum lycopersicum HOM05D005085 ORTHO05D006135 2.3e-299 1031.9 749 65.7
Duzib068G1071 Durio zibethinus HOM05D005085 ORTHO05D006135 6.7e-299 1030.4 742 67.7
Migut.F01031 Erythranthe guttata HOM05D005085 ORTHO05D006135 6.7e-299 1030.4 743 65.0
PGR142G4232 Punica granatum HOM05D005085 ORTHO05D006135 1.1e-298 1029.6 745 65.5
Rhsim03G0208500 Rhododendron simsii HOM05D005085 ORTHO05D006135 1.1e-298 1029.6 750 66.7
Gohir.1Z049319 Gossypium hirsutum HOM05D005085 ORTHO05D006135 2.6e-298 1028.5 740 67.7
Gohir.A05G414800 Gossypium hirsutum HOM05D005085 ORTHO05D006135 2.6e-298 1028.5 742 67.7
Cpa.g.sc3.82 Carica papaya HOM05D005085 ORTHO05D006135 3.3e-298 1028.1 762 66.3
SGA_v2.0_scaffold192G40551 Striga asiatica HOM05D005085 ORTHO05D006135 3.3e-298 1028.1 746 65.4
Sed0021974 Sechium edule HOM05D005085 ORTHO05D006135 5.7e-298 1027.3 743 66.5
DCAR_008919 Daucus carota HOM05D005085 ORTHO05D006135 1.7e-297 1025.8 741 65.0
Hund11663 Selenicereus undatus HOM05D005085 ORTHO05D006135 2.8e-297 1025.0 756 65.7
Oeu037073.1 Olea europaea HOM05D005085 ORTHO05D006135 1.1e-296 1023.1 744 65.9
Ah.07g205630 Amaranthus hybridus HOM05D005085 ORTHO05D006135 1.8e-296 1022.3 760 65.5
Migut.F00216 Erythranthe guttata HOM05D005085 ORTHO05D006135 2.0e-295 1018.8 742 66.0
Oeu060983.2 Olea europaea HOM05D005085 ORTHO05D006135 2.2e-294 1015.4 786 63.2
CARHR189270 Cardamine hirsuta HOM05D005085 ORTHO05D006135 5.0e-294 1014.2 560 88.4
Manes.01G183000 Manihot esculenta HOM05D005085 ORTHO05D006135 5.0e-294 1014.2 745 66.8
Duzib205G0228 Durio zibethinus HOM05D005085 ORTHO05D006135 1.5e-293 1012.7 708 68.6
Sabra12G0017000 Salix brachista HOM05D005085 ORTHO05D006135 1.5e-293 1012.7 747 65.5
FAN10G0692 Fragaria x ananassa HOM05D005085 ORTHO05D006135 1.9e-293 1012.3 742 66.0
FAN10G4178 Fragaria x ananassa HOM05D005085 ORTHO05D006135 1.9e-293 1012.3 742 66.0
TPR.G19373 Trifolium pratense HOM05D005085 ORTHO05D006135 1.9e-293 1012.3 779 63.3
Ca_16704_v3 Cicer arietinum L. HOM05D005085 ORTHO05D006135 3.2e-293 1011.5 749 65.2
Lsat_1_v5_gn_2_136081 Lactuca sativa HOM05D005085 ORTHO05D006135 3.2e-293 1011.5 741 64.5
ClCG01G000430 Citrullus lanatus HOM05D005085 ORTHO05D006135 4.8e-289 997.7 785 62.4
PSO384G0679 Papaver somniferum HOM05D005085 ORTHO05D006135 3.1e-288 995.0 744 65.6
HanXRQChr04g0100521 Helianthus annuus HOM05D005085 ORTHO05D006135 4.1e-288 994.6 735 64.1
PSO135G0649 Papaver somniferum HOM05D005085 ORTHO05D006135 7.0e-288 993.8 744 65.6
Nn1g00241 Nelumbo nucifera HOM05D005085 ORTHO05D006135 5.9e-287 990.7 746 65.4
CDE04G2343 Ceratophyllum demersum HOM05D005085 ORTHO05D006135 2.9e-286 988.4 747 63.3
ATR0602G298 Amborella trichopoda HOM05D005085 ORTHO05D006135 1.4e-283 979.5 749 63.3
Actinidia34217 Actinidia chinensis HOM05D005085 ORTHO05D006135 4.5e-279 964.5 676 68.9
Dinv35331 Davidia involucrata HOM05D005085 ORTHO05D006135 2.8e-276 955.3 666 69.4
SMO334G0022 Selaginella moellendorffii HOM05D005085 ORTHO05D006135 4.4e-274 948.0 744 61.8
Aqoxy7G00083 Aquilegia oxysepala HOM05D005085 ORTHO05D006135 2.4e-272 942.2 748 61.8
ECA238G3029 Erigeron canadensis HOM05D005085 ORTHO05D006135 7.0e-272 940.6 737 61.7
Nn3g18991 Nelumbo nucifera HOM05D005085 ORTHO05D006135 2.0e-271 939.1 744 61.4
Sed0008428 Sechium edule HOM05D005085 ORTHO05D006135 1.3e-270 936.4 746 61.4
Zm00001eb237090 Zea mays HOM05D005085 ORTHO05D006135 7.3e-269 930.6 747 60.8
Mapoly0005s0073 Marchantia polymorpha HOM05D005085 ORTHO05D006135 3.7e-265 918.3 742 58.6
SEGI_15573 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 1.7e-262 909.4 745 58.8
Peaxi162Scf00717g00321 Petunia axillaris HOM05D005085 ORTHO05D006135 2.3e-262 909.1 743 59.2
Pp3c8_9480 Physcomitrium patens HOM05D005085 ORTHO05D006135 1.1e-256 890.2 746 58.2
Pp3c3_30620 Physcomitrium patens HOM05D005085 ORTHO05D006135 2.4e-256 889.0 746 58.4
AUR62019399 Chenopodium quinoa HOM05D005085 ORTHO05D006135 7.8e-255 884.0 742 59.0
Manes.02G143100 Manihot esculenta HOM05D005085 ORTHO05D006135 1.0e-254 883.6 600 70.2
AUR62006093 Chenopodium quinoa HOM05D005085 ORTHO05D006135 5.6e-253 877.9 632 66.9
Glyma.04G236000 Glycine max HOM05D005085 ORTHO05D006135 7.5e-250 867.5 601 67.9
MBI06_g41630_MAGBIO Magnolia biondii HOM05D005085 ORTHO05D006135 2.6e-234 815.8 715 58.9
Gorai.012G002400 Gossypium raimondii HOM05D005085 ORTHO05D006135 3.8e-233 812.0 554 68.8
Gohir.D04G001366 Gossypium hirsutum HOM05D005085 ORTHO05D006135 5.1e-230 801.6 548 68.6
Os02g0290600 Oryza sativa ssp. japonica HOM05D005085 ORTHO05D006135 2.8e-228 795.8 602 62.1
AagrBONN_evm.TU.Sc2ySwM_368.3337 Anthoceros agrestis HOM05D005085 ORTHO05D006135 3.5e-215 752.3 576 61.3
Oeu060984.1 Olea europaea HOM05D005085 ORTHO05D006135 1.3e-212 743.8 560 64.3
SEGI_29845 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 5.3e-211 738.4 561 62.2
PRCOL_00001990 Prasinoderma coloniale HOM05D005085 ORTHO05D006135 2.7e-199 699.5 794 46.9
CBR_g26168 Chara braunii HOM05D005085 ORTHO05D006135 1.8e-190 670.2 605 54.4
HPP92_002922 Vanilla planifolia HOM05D005085 ORTHO05D006135 1.1e-184 651.0 554 59.4
SEGI_31502 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 2.6e-181 639.8 596 53.4
MCO02G195 Micromonas commoda HOM05D005085 ORTHO05D006135 5.8e-141 505.8 782 38.5
SEGI_36069 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 2.0e-109 401.0 377 53.3
CARHR189280 Cardamine hirsuta HOM05D005085 ORTHO05D006135 1.4e-94 351.7 186 88.2
BcaB04g18355 Brassica carinata HOM05D005085 ORTHO05D006135 1.9e-91 341.3 221 77.8
Lj1A1019T47 Lonicera japonica HOM05D005085 ORTHO05D006135 1.1e-64 252.3 266 52.6
HPP92_028640 Vanilla planifolia HOM05D005085 ORTHO05D006135 1.6e-42 178.7 266 44.7
Cfa026592 Carpinus fangiana HOM05D005085 ORTHO05D006135 2.7e-37 161.4 596 23.3
Cfa024188 Carpinus fangiana HOM05D005085 ORTHO05D006135 1.7e-36 158.7 646 23.5
Lj1C1017G3 Lonicera japonica HOM05D005085 ORTHO05D006135 3.3e-35 154.5 245 38.8
SEGI_01874 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 2.5e-27 128.3 108 55.6
HPP92_002923 Vanilla planifolia HOM05D005085 ORTHO05D006135 8.3e-23 113.2 86 65.1
HPP92_002921 Vanilla planifolia HOM05D005085 ORTHO05D006135 3.1e-17 94.7 52 76.9
Gohir.D02G140050 Gossypium hirsutum HOM05D003289 ORTHO05D004594 1.5e-16 92.4 58 77.6
Gorai.005G156700 Gossypium raimondii HOM05D003289 ORTHO05D004594 2.0e-16 92.0 58 77.6
Ah.03g137970 Amaranthus hybridus HOM05D005085 ORTHO05D006135 3.4e-16 91.3 172 38.4
HPP92_028641 Vanilla planifolia HOM05D005085 ORTHO05D006135 2.2e-15 88.6 104 47.1
Gohir.D10G185350 Gossypium hirsutum HOM05D005085 ORTHO05D006135 2.9e-15 88.2 46 82.6
Gorai.011G207800 Gossypium raimondii HOM05D005085 ORTHO05D006135 2.9e-15 88.2 46 82.6
MCO08G067 Micromonas commoda HOM05D003117 ORTHO05D003612 7.1e-14 83.6 215 28.4
Pp3c20_7850 Physcomitrium patens HOM05D003475 ORTHO05D026663 6.0e-13 80.5 261 24.1
Lj1C1016T11 Lonicera japonica HOM05D005085 ORTHO05D006135 7.3e-11 73.6 41 78.0
MD01G1219200 Malus domestica HOM05D005085 ORTHO05D006135 1.1e-09 69.7 66 56.1
BcaC08g44280 Brassica carinata HOM05D003117 ORTHO05D003612 6.8e-09 67.0 213 25.4
C06p16990 Brassica napus HOM05D003117 ORTHO05D003612 6.8e-09 67.0 213 25.4
Sp7g12660 Schrenkiella parvula HOM05D003117 ORTHO05D003612 6.8e-09 67.0 189 27.5
BolC6t36899H Brassica oleracea HOM05D003117 ORTHO05D003612 1.2e-08 66.2 210 25.7
A05p16700 Brassica napus HOM05D003117 ORTHO05D003612 1.5e-08 65.9 215 26.5
Gorai.004G093300 Gossypium raimondii HOM05D001074 ORTHO05D001188 2.0e-08 65.5 34 79.4
Mapoly0111s0036 Marchantia polymorpha HOM05D003117 ORTHO05D003612 4.4e-08 64.3 189 25.4
SMO347G0435 Selaginella moellendorffii HOM05D003117 ORTHO05D003612 5.8e-08 63.9 257 23.0
CBR_g47 Chara braunii HOM05D003117 ORTHO05D003612 9.9e-08 63.2 222 23.9
ECA232G0051 Erigeron canadensis HOM05D004658 ORTHO05D005927 1.3e-07 62.8 150 26.7
BcaB04g18243 Brassica carinata HOM05D003117 ORTHO05D003612 2.2e-07 62.0 187 25.1
CSS0007643 Camellia sinensis var. sinensis HOM05D003475 ORTHO05D004155 2.2e-07 62.0 280 23.9
PGR083G1228 Punica granatum HOM05D003475 ORTHO05D004155 2.2e-07 62.0 269 22.7
PSO541G5638 Papaver somniferum HOM05D003475 ORTHO05D004155 3.8e-07 61.2 257 23.3
PSO675G3306 Papaver somniferum HOM05D003475 ORTHO05D004155 3.8e-07 61.2 257 23.3
AagrBONN_evm.TU.Sc2ySwM_368.3180 Anthoceros agrestis HOM05D003117 ORTHO05D003612 4.9e-07 60.8 189 24.3
MELO3C016729.2 Cucumis melo HOM05D003475 ORTHO05D004155 4.9e-07 60.8 301 22.3
CsaV3_4G034070 Cucumis sativus L. HOM05D003475 ORTHO05D004155 4.9e-07 60.8 299 23.7
CsaV3_4G034080 Cucumis sativus L. HOM05D003475 ORTHO05D004155 4.9e-07 60.8 291 23.0
COL.COLO4_26452 Corchorus olitorius HOM05D003475 ORTHO05D004155 6.4e-07 60.5 296 22.6
Manes.15G035400 Manihot esculenta HOM05D003117 ORTHO05D003612 8.4e-07 60.1 255 22.7
PSO210G0990 Papaver somniferum HOM05D003117 ORTHO05D003612 8.4e-07 60.1 243 20.6
Gohir.A06G016100 Gossypium hirsutum HOM05D003475 ORTHO05D004155 1.1e-06 59.7 250 23.2
Atru.chr13.624 Acer truncatum HOM05D003475 ORTHO05D004155 2.4e-06 58.5 271 23.2
AUR62003125 Chenopodium quinoa HOM05D003117 ORTHO05D003612 2.4e-06 58.5 214 26.6
MCO09G418 Micromonas commoda HOM05D004658 ORTHO05D005927 2.4e-06 58.5 165 27.9
Ca_05516_v3 Cicer arietinum L. HOM05D003475 ORTHO05D004155 3.2e-06 58.2 300 21.7
Lj1C1016T12 Lonicera japonica HOM05D005085 ORTHO05D006135 3.2e-06 58.2 43 65.1
ECA236G4246 Erigeron canadensis HOM05D004658 ORTHO05D005927 4.2e-06 57.8 151 27.8
Cc10_g03900 Coffea canephora HOM05D003475 ORTHO05D004155 5.4e-06 57.4 247 21.9
HanXRQChr06g0168141 Helianthus annuus HOM05D004658 ORTHO05D005927 7.1e-06 57.0 129 31.0
CDE06G0682 Ceratophyllum demersum HOM05D003117 ORTHO05D003612 9.3e-06 56.6 189 25.4


User provided reference genes

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