Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p06400 Brassica napus HOM05D005859 ORTHO05D007576 3.3e-33 144.4 72 100.0
BcaC04g23549 Brassica carinata HOM05D005859 ORTHO05D007576 2.1e-19 98.6 48 95.8
BolC9t53628H Brassica oleracea HOM05D005859 ORTHO05D007576 2.1e-19 98.6 48 95.8
Thhalv10004821m.g Eutrema salsugineum HOM05D005859 ORTHO05D007576 4.6e-19 97.4 48 93.8
BolC7t44822H Brassica oleracea HOM05D005859 ORTHO05D008158 1.8e-18 95.5 48 91.7
BcaB04g19801 Brassica carinata HOM05D005859 ORTHO05D007576 3.9e-18 94.4 48 89.6
A06p35610 Brassica napus HOM05D005859 ORTHO05D007576 3.9e-18 94.4 48 89.6
C07p42930 Brassica napus HOM05D005859 ORTHO05D008158 6.7e-18 93.6 48 89.6
Carub.0006s2269 Capsella rubella HOM05D005859 ORTHO05D007576 8.7e-18 93.2 48 87.5
CARHR188610 Cardamine hirsuta HOM05D005859 ORTHO05D007576 8.7e-18 93.2 48 87.5
AL6G36490 Arabidopsis lyrata HOM05D005859 ORTHO05D007576 1.9e-17 92.0 48 85.4
AT5G24840 Arabidopsis thaliana HOM05D005859 ORTHO05D007576 4.3e-17 90.9 48 87.5
Sp2g22610 Schrenkiella parvula HOM05D005859 ORTHO05D007576 4.3e-17 90.9 48 85.4
THA.LOC104814931 Tarenaya hassleriana HOM05D005859 ORTHO05D007576 4.8e-16 87.4 48 83.3
Phvul.009G104500 Phaseolus vulgaris HOM05D005859 ORTHO05D007576 1.1e-15 86.3 48 79.2
Atru.chr7.2673 Acer truncatum HOM05D005859 ORTHO05D007576 2.4e-15 85.1 48 79.2
Ciclev10009277m.g Citrus clementina HOM05D005859 ORTHO05D007576 3.1e-15 84.7 48 81.2
Aa31LG11G4050 Aethionema arabicum HOM05D005859 ORTHO05D007576 5.3e-15 84.0 48 79.2
CiPaw.07G208600 Carya illinoinensis HOM05D005859 ORTHO05D007576 5.3e-15 84.0 48 79.2
Potri.018G003900 Populus trichocarpa HOM05D005859 ORTHO05D007576 1.2e-14 82.8 48 75.0
Eucgr.A02021 Eucalyptus grandis HOM05D005859 ORTHO05D007576 1.5e-14 82.4 48 77.1
FvH4_2g36340 Fragaria vesca HOM05D005859 ORTHO05D007576 2.0e-14 82.0 48 79.2
FAN15G0047 Fragaria x ananassa HOM05D005859 ORTHO05D007576 2.0e-14 82.0 48 79.2
FAN20G1422 Fragaria x ananassa HOM05D005859 ORTHO05D007576 2.0e-14 82.0 48 79.2
VMungo1309G0784 Vigna mungo HOM05D005859 ORTHO05D007576 2.0e-14 82.0 48 77.1
CAN.G149.19 Capsicum annuum HOM05D005859 ORTHO05D007576 2.6e-14 81.6 48 77.1
Thecc.04G293600 Theobroma cacao HOM05D005859 ORTHO05D007576 2.6e-14 81.6 48 77.1
Cfa013324 Carpinus fangiana HOM05D005859 ORTHO05D007576 4.5e-14 80.9 48 75.0
AUR62007184 Chenopodium quinoa HOM05D005859 ORTHO05D007576 4.5e-14 80.9 48 75.0
Haze_21816 Corylus avellana HOM05D005859 ORTHO05D007576 4.5e-14 80.9 48 75.0
QL12p026076 Quercus lobata HOM05D005859 ORTHO05D007576 4.5e-14 80.9 48 77.1
HanXRQChr07g0193381 Helianthus annuus HOM05D005859 ORTHO05D007576 5.9e-14 80.5 48 75.0
PGR042G0112 Punica granatum HOM05D005859 ORTHO05D007576 5.9e-14 80.5 48 77.1
Solyc02g068650.2 Solanum lycopersicum HOM05D005859 ORTHO05D007576 5.9e-14 80.5 48 79.2
TWI63G1176 Tripterygium wilfordii HOM05D005859 ORTHO05D007576 5.9e-14 80.5 48 75.0
EL10Ac5g12246 Beta vulgaris HOM05D005859 ORTHO05D007576 7.7e-14 80.1 48 75.0
Potri.006G277100 Populus trichocarpa HOM05D005859 ORTHO05D007576 7.7e-14 80.1 48 75.0
Sopen02g017820 Solanum pennellii HOM05D005859 ORTHO05D007576 7.7e-14 80.1 48 79.2
PGSC0003DMG400010428 Solanum tuberosum HOM05D005859 ORTHO05D007576 7.7e-14 80.1 48 79.2
Ah.07g199340 Amaranthus hybridus HOM05D005859 ORTHO05D007576 1.3e-13 79.3 48 75.0
AUR62018819 Chenopodium quinoa HOM05D005859 ORTHO05D007576 1.3e-13 79.3 48 72.9
Duzib151G0554 Durio zibethinus HOM05D005859 ORTHO05D007576 1.3e-13 79.3 48 75.0
Glyma.04G078700 Glycine max HOM05D005859 ORTHO05D007576 1.3e-13 79.3 48 75.0
Lj1g0020437 Lotus japonicus HOM05D005859 ORTHO05D007576 1.3e-13 79.3 48 75.0
Nn2g12765 Nelumbo nucifera HOM05D005859 ORTHO05D007576 1.3e-13 79.3 48 72.9
Prupe.1G454800 Prunus persica HOM05D005859 ORTHO05D007576 1.3e-13 79.3 48 77.1
RcHm_v2.0_Chr6g0305541 Rosa chinensis HOM05D005859 ORTHO05D007576 1.3e-13 79.3 48 75.0
CSS0020153 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 1.7e-13 79.0 57 66.7
CANSAT64G2965 Cannabis sativa HOM05D005859 ORTHO05D007576 1.7e-13 79.0 48 75.0
Duzib151G0446 Durio zibethinus HOM05D005859 ORTHO05D007576 1.7e-13 79.0 48 75.0
HanXRQChr09g0275211 Helianthus annuus HOM05D005859 ORTHO05D007576 1.7e-13 79.0 48 72.9
Manes.08G049200 Manihot esculenta HOM05D005859 ORTHO05D007576 1.7e-13 79.0 48 75.0
Sc10g0009100 Simmondsia chinensis HOM05D005859 ORTHO05D007576 1.7e-13 79.0 48 72.9
Actinidia22411 Actinidia chinensis HOM05D005859 ORTHO05D007576 2.2e-13 78.6 48 77.1
CSS0019957 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 2.2e-13 78.6 48 75.0
DCAR_010833 Daucus carota HOM05D005859 ORTHO05D007576 2.2e-13 78.6 48 75.0
Cc09_g05860 Coffea canephora HOM05D005859 ORTHO05D007576 2.9e-13 78.2 48 72.9
COL.COLO4_34684 Corchorus olitorius HOM05D005859 ORTHO05D007576 2.9e-13 78.2 48 72.9
Os06g0236900 Oryza sativa ssp. japonica HOM05D005859 ORTHO05D007576 2.9e-13 78.2 48 72.9
Sabra06G0214800 Salix brachista HOM05D005859 ORTHO05D007576 2.9e-13 78.2 48 75.0
Cpa.g.sc10.203 Carica papaya HOM05D005859 ORTHO05D007576 3.8e-13 77.8 48 75.0
Dinv07263 Davidia involucrata HOM05D005859 ORTHO05D007576 3.8e-13 77.8 48 72.9
Lj2P347T15 Lonicera japonica HOM05D005859 ORTHO05D007576 3.8e-13 77.8 48 77.1
Lalb_Chr11g0064301 Lupinus albus HOM05D005859 ORTHO05D007576 3.8e-13 77.8 48 75.0
MD08G1121000 Malus domestica HOM05D005859 ORTHO05D007576 3.8e-13 77.8 48 75.0
Sabra18G0001700 Salix brachista HOM05D005859 ORTHO05D007576 3.8e-13 77.8 48 70.8
Sabra18G0009500 Salix brachista HOM05D005859 ORTHO05D007576 3.8e-13 77.8 48 70.8
CSS0002423 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 5.0e-13 77.4 48 72.9
CSS0037116 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 5.0e-13 77.4 48 72.9
ECA238G0328 Erigeron canadensis HOM05D005859 ORTHO05D007576 5.0e-13 77.4 48 70.8
MD15G1100000 Malus domestica HOM05D005859 ORTHO05D007576 5.0e-13 77.4 48 75.0
Nitab4.5_0003379g0070 Nicotiana tabacum HOM05D005859 ORTHO05D007576 6.5e-13 77.0 48 75.0
MBI07_g41262_MAGBIO Magnolia biondii HOM05D005859 ORTHO05D007576 8.5e-13 76.6 48 75.0
Sed0022456 Sechium edule HOM05D005859 ORTHO05D007576 8.5e-13 76.6 48 72.9
ClCG08G012440 Citrullus lanatus HOM05D005859 ORTHO05D007576 1.1e-12 76.3 48 70.8
MELO3C011163.2 Cucumis melo HOM05D005859 ORTHO05D007576 1.1e-12 76.3 48 70.8
CsaV3_2G031130 Cucumis sativus L. HOM05D005859 ORTHO05D007576 1.1e-12 76.3 48 70.8
Nitab4.5_0006282g0050 Nicotiana tabacum HOM05D005859 ORTHO05D007576 1.1e-12 76.3 48 75.0
Rhsim05G0088100 Rhododendron simsii HOM05D005859 ORTHO05D007576 1.1e-12 76.3 48 70.8
Sed0013908 Sechium edule HOM05D005859 ORTHO05D007576 1.1e-12 76.3 48 70.8
Gohir.A09G063900 Gossypium hirsutum HOM05D005859 ORTHO05D007576 1.4e-12 75.9 48 70.8
Rhsim02G0125100 Rhododendron simsii HOM05D005859 ORTHO05D007576 1.4e-12 75.9 48 70.8
Ca_15630_v3 Cicer arietinum L. HOM05D005859 ORTHO05D007576 1.9e-12 75.5 48 68.8
Lsat_1_v5_gn_5_41801 Lactuca sativa HOM05D005859 ORTHO05D007576 1.9e-12 75.5 48 72.9
Oeu056039.1 Olea europaea HOM05D005859 ORTHO05D007576 1.9e-12 75.5 48 70.8
Glyma.06G080300 Glycine max HOM05D005859 ORTHO05D007576 2.5e-12 75.1 48 72.9
PSO063G7086 Papaver somniferum HOM05D005859 ORTHO05D007576 2.5e-12 75.1 48 70.8
Psat5g022960 Pisum sativum HOM05D005859 ORTHO05D007576 2.5e-12 75.1 48 68.8
Medtr3g109360 Medicago truncatula HOM05D005859 ORTHO05D007576 3.2e-12 74.7 48 68.8
Aqoxy7G02813 Aquilegia oxysepala HOM05D005859 ORTHO05D007576 4.2e-12 74.3 48 68.8
CSS0043283 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 4.2e-12 74.3 48 68.8
Migut.A01131 Erythranthe guttata HOM05D005859 ORTHO05D007576 4.2e-12 74.3 48 68.8
Gohir.D09G062800 Gossypium hirsutum HOM05D005859 ORTHO05D007576 4.2e-12 74.3 48 70.8
Gorai.006G077600 Gossypium raimondii HOM05D005859 ORTHO05D007576 4.2e-12 74.3 48 70.8
TPR.G1368 Trifolium pratense HOM05D005859 ORTHO05D007576 5.5e-12 73.9 48 66.7
TAR625G0738 Trochodendron aralioides HOM05D005859 ORTHO05D007576 5.5e-12 73.9 48 66.7
CSS0012487 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 7.2e-12 73.6 48 70.8
Zm00001eb208790 Zea mays HOM05D005859 ORTHO05D007576 7.2e-12 73.6 48 68.8
HPP92_010527 Vanilla planifolia HOM05D005859 ORTHO05D007576 9.4e-12 73.2 48 68.8
HPP92_010538 Vanilla planifolia HOM05D005859 ORTHO05D007576 9.4e-12 73.2 48 68.8
HPP92_010546 Vanilla planifolia HOM05D005859 ORTHO05D007576 9.4e-12 73.2 48 68.8
MSTRG.12122 Avicennia marina HOM05D005859 ORTHO05D007576 1.2e-11 72.8 48 68.8
unitig_21.g20313 Utricularia gibba HOM05D005859 ORTHO05D007576 1.6e-11 72.4 48 68.8
SGA_v2.0_scaffold104G30176 Striga asiatica HOM05D005859 ORTHO05D007576 3.6e-11 71.2 48 68.8
CSS0049229 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 4.6e-11 70.9 48 68.8
CSS0022235 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 6.1e-11 70.5 47 66.0
SEGI_16955 Sequoiadendron giganteum HOM05D005859 ORTHO05D007576 1.0e-10 69.7 48 66.7
HPP92_010638 Vanilla planifolia HOM05D005859 ORTHO05D007576 1.0e-10 69.7 48 66.7
ATR0697G154 Amborella trichopoda HOM05D005859 ORTHO05D007576 8.8e-10 66.6 48 62.5
SalBow1G3786 Salvia bowleyana HOM05D005859 ORTHO05D007576 8.8e-10 66.6 48 62.5
Mapoly0026s0057 Marchantia polymorpha HOM05D005859 ORTHO05D007576 1.1e-09 66.2 48 62.5
HPP92_010586 Vanilla planifolia HOM05D005859 ORTHO05D007576 2.0e-09 65.5 44 68.2
Pp3c24_9600 Physcomitrium patens HOM05D005859 ORTHO05D007576 2.8e-08 61.6 48 58.3
SMO358G0125 Selaginella moellendorffii HOM05D005859 ORTHO05D007576 4.1e-07 57.8 48 58.3
CBR_g63067 Chara braunii HOM05D005859 ORTHO05D007576 9.1e-07 56.6 48 58.3
Cre07.g314550 Chlamydomonas reinhardtii HOM05D005859 ORTHO05D007576 9.1e-07 56.6 47 55.3
Peaxi162Scf00149g00014 Petunia axillaris HOM05D005859 ORTHO05D007576 1.5e-06 55.8 64 46.9
AagrBONN_evm.TU.Sc2ySwM_344.1368 Anthoceros agrestis HOM05D005859 ORTHO05D007576 5.9e-06 53.9 46 54.3
GSVIVG01035552001 Vitis vinifera HOM05D005859 ORTHO05D007576 5.9e-06 53.9 37 67.6


User provided reference genes

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