Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 6.9e-114 414.1 222 100.0
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 5.8e-113 411.0 222 99.1
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 3.7e-99 365.2 215 91.6
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 3.7e-99 365.2 215 91.6
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 2.3e-93 345.9 215 88.4
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 2.4e-82 309.3 216 80.1
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 4.1e-82 308.5 217 79.3
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 4.1e-82 308.5 217 79.3
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 1.3e-80 303.5 219 78.5
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 2.2e-80 302.8 215 79.5
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 1.0e-77 293.9 242 71.9
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 1.1e-76 290.4 242 71.1
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 1.3e-75 287.0 218 75.2
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 1.7e-75 286.6 215 74.4
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 1.7e-72 276.6 215 74.0
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 2.9e-72 275.8 217 73.7
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 5.0e-72 275.0 214 73.4
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 4.0e-69 265.4 218 70.6
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 3.4e-68 262.3 208 69.2
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 1.5e-60 236.9 209 70.3
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 1.7e-59 233.4 209 63.6
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 2.0e-52 209.9 216 55.1
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 1.1e-50 204.1 209 54.1
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 1.4e-50 203.8 217 58.1
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 9.2e-50 201.1 193 57.5
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 5.9e-49 198.4 216 53.7
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 7.8e-49 198.0 206 55.3
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 2.3e-48 196.4 217 54.8
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 3.0e-48 196.1 214 55.1
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 3.0e-48 196.1 214 55.1
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 3.9e-48 195.7 205 53.2
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 5.0e-48 195.3 214 55.6
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 1.1e-47 194.1 209 53.1
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 1.5e-47 193.7 214 55.1
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 1.5e-47 193.7 217 53.9
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 1.5e-47 193.7 184 58.7
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 1.9e-47 193.4 205 52.7
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 1.9e-47 193.4 209 54.5
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 2.5e-47 193.0 209 54.1
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 3.3e-47 192.6 217 54.4
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 4.3e-47 192.2 209 55.0
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 4.3e-47 192.2 205 51.2
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 4.3e-47 192.2 201 54.2
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 7.3e-47 191.4 205 52.2
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 7.3e-47 191.4 210 51.4
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 7.3e-47 191.4 209 50.2
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 1.2e-46 190.7 200 55.5
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 2.8e-46 189.5 210 51.9
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 4.7e-46 188.7 212 52.8
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 8.0e-46 188.0 217 52.5
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 1.0e-45 187.6 171 61.4
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 1.0e-45 187.6 209 51.7
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 1.0e-45 187.6 202 54.5
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 1.4e-45 187.2 192 54.7
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 1.4e-45 187.2 215 51.2
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 1.8e-45 186.8 203 54.2
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 3.1e-45 186.0 198 53.0
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 4.0e-45 185.7 205 49.8
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 8.9e-45 184.5 206 52.4
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 8.9e-45 184.5 205 50.7
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 8.9e-45 184.5 208 51.4
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 2.6e-44 183.0 207 53.6
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 3.4e-44 182.6 215 50.2
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 3.4e-44 182.6 175 55.4
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 5.8e-44 181.8 205 49.8
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 1.3e-43 180.6 200 51.5
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 1.7e-43 180.3 194 52.6
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 1.4e-42 177.2 209 50.2
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 1.9e-42 176.8 210 51.0
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 1.9e-42 176.8 200 50.5
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 2.4e-42 176.4 203 49.8
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 7.0e-42 174.9 214 48.6
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 9.2e-42 174.5 198 51.5
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 1.6e-41 173.7 201 50.2
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 2.0e-41 173.3 213 49.3
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 2.7e-41 172.9 214 51.9
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 2.7e-41 172.9 198 51.0
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 6.0e-41 171.8 205 50.2
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 6.0e-41 171.8 219 48.9
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 1.0e-40 171.0 198 50.5
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 1.0e-40 171.0 199 49.7
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 1.3e-40 170.6 203 48.3
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 3.9e-40 169.1 168 54.2
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 5.0e-40 168.7 206 49.0
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 6.6e-40 168.3 201 46.3
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 1.9e-39 166.8 205 45.4
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 3.3e-39 166.0 214 46.7
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 4.3e-39 165.6 209 49.8
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 5.6e-39 165.2 203 48.3
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 7.3e-39 164.9 205 43.9
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 9.5e-39 164.5 211 45.5
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 2.1e-38 163.3 206 43.7
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 2.8e-38 162.9 222 46.4
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 4.7e-38 162.2 211 45.0
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 6.2e-38 161.8 212 46.7
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 1.1e-37 161.0 218 50.0
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 1.8e-37 160.2 203 46.8
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 2.3e-37 159.8 148 56.1
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 5.2e-37 158.7 201 46.8
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 1.5e-36 157.1 207 44.0
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 3.7e-35 152.5 211 42.2
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 1.4e-34 150.6 209 44.0
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 2.4e-34 149.8 209 47.8
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 5.4e-34 148.7 206 43.2
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 5.4e-34 148.7 199 46.7
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 5.4e-34 148.7 209 47.4
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 5.4e-34 148.7 201 44.3
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 9.2e-34 147.9 211 43.6
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 7.8e-33 144.8 203 43.8
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 7.8e-33 144.8 192 44.3
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 7.3e-31 138.3 141 53.9
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 6.2e-30 135.2 205 40.0
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 6.2e-30 135.2 205 40.0
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 1.4e-26 124.0 220 38.6
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 4.6e-25 119.0 199 42.2
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 1.3e-24 117.5 123 56.9
arahy.Tifrunner.gnm1.ann1.CUZL6Q Arachis hypogaea HOM05D004800 ORTHO05D005842 2.5e-23 113.2 213 39.4
arahy.Tifrunner.gnm1.ann1.N4WP0Z Arachis hypogaea HOM05D004800 ORTHO05D005842 2.5e-23 113.2 213 39.4
Pp3c2_14120 Physcomitrium patens HOM05D004800 ORTHO05D005842 7.3e-23 111.7 171 39.8
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 1.2e-22 110.9 85 63.5
arahy.Tifrunner.gnm1.ann1.D9UBCD Arachis hypogaea HOM05D004800 ORTHO05D005842 1.6e-22 110.5 210 39.0
arahy.Tifrunner.gnm1.ann1.YE5PM3 Arachis hypogaea HOM05D004800 ORTHO05D005842 1.6e-22 110.5 213 38.5
unitig_26.g9784 Utricularia gibba HOM05D004800 ORTHO05D005842 1.6e-22 110.5 196 38.3
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 2.8e-22 109.8 120 54.2
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 5.2e-21 105.5 198 36.9
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 6.9e-21 105.1 201 37.8
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 3.8e-19 99.4 200 35.0
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 2.7e-17 93.2 208 35.1
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 2.7e-17 93.2 180 31.1
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 7.8e-17 91.7 196 33.7
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 2.5e-15 86.7 181 33.7
TPR.G38911 Trifolium pratense HOM05D004800 ORTHO05D005842 1.8e-13 80.5 193 31.1
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 5.3e-13 79.0 178 30.9
Medtr1g014130 Medicago truncatula HOM05D004800 ORTHO05D005842 9.9e-12 74.7 175 32.6
Lalb_Chr24g0401961 Lupinus albus HOM05D004800 ORTHO05D005842 5.4e-10 68.9 86 40.7
TPR.G28957 Trifolium pratense HOM05D000201 ORTHO05D000421 4.3e-07 59.3 50 52.0
SEGI_18119 Sequoiadendron giganteum HOM05D004800 ORTHO05D005842 9.6e-07 58.2 96 31.2


User provided reference genes

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