Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p05250 Brassica napus HOM05D004613 ORTHO05D006095 5.6e-40 167.2 84 100.0
BcaNung02466 Brassica carinata HOM05D004613 ORTHO05D006095 1.5e-16 89.4 49 87.8
A06p37600 Brassica napus HOM05D004613 ORTHO05D006095 1.5e-16 89.4 49 87.8
C07p40710 Brassica napus HOM05D004613 ORTHO05D006095 1.5e-16 89.4 49 87.8
BolC7t44599H Brassica oleracea HOM05D004613 ORTHO05D006095 1.5e-16 89.4 49 87.8
BraA06t26679Z Brassica rapa HOM05D004613 ORTHO05D006095 1.9e-16 89.0 49 85.7
Thhalv10004565m.g Eutrema salsugineum HOM05D004613 ORTHO05D006095 3.3e-16 88.2 49 85.7
BcaNung04365 Brassica carinata HOM05D004613 ORTHO05D006095 4.3e-16 87.8 49 83.7
Sp2g20610 Schrenkiella parvula HOM05D004613 ORTHO05D006095 4.3e-16 87.8 49 85.7
CARHR185980 Cardamine hirsuta HOM05D004613 ORTHO05D006095 2.1e-15 85.5 49 83.7
THA.LOC104818675 Tarenaya hassleriana HOM05D004613 ORTHO05D006095 2.1e-15 85.5 49 81.6
AL6G39630 Arabidopsis lyrata HOM05D004613 ORTHO05D006095 2.8e-15 85.1 49 83.7
AT5G27395 Arabidopsis thaliana HOM05D004613 ORTHO05D006095 2.8e-15 85.1 49 83.7
Carub.0006s2516 Capsella rubella HOM05D004613 ORTHO05D006095 3.6e-15 84.7 49 81.6
Aa31LG11G9160 Aethionema arabicum HOM05D004613 ORTHO05D006095 4.7e-15 84.3 49 85.7
TWI56G1338 Tripterygium wilfordii HOM05D004613 ORTHO05D006095 3.4e-13 78.2 49 77.6
Lj9A681T39 Lonicera japonica HOM05D004613 ORTHO05D006095 1.7e-12 75.9 53 73.6
Actinidia05726 Actinidia chinensis HOM05D004613 ORTHO05D006095 2.2e-12 75.5 65 64.6
Glyma.10G157300 Glycine max HOM05D004613 ORTHO05D006095 3.8e-12 74.7 113 42.5
Migut.B01124 Erythranthe guttata HOM05D004613 ORTHO05D006095 8.4e-12 73.6 48 75.0
Atru.chr2.494 Acer truncatum HOM05D004613 ORTHO05D006095 2.4e-11 72.0 49 71.4
Cpa.g.sc48.6 Carica papaya HOM05D004613 ORTHO05D006095 2.4e-11 72.0 48 75.0
Rhsim07G0179300 Rhododendron simsii HOM05D004613 ORTHO05D006095 2.4e-11 72.0 65 60.0
TPR.G2750 Trifolium pratense HOM05D004613 ORTHO05D006095 2.4e-11 72.0 49 71.4
CsaV3_1G039190 Cucumis sativus L. HOM05D004613 ORTHO05D006095 3.2e-11 71.6 49 73.5
DCAR_015964 Daucus carota HOM05D004613 ORTHO05D006095 3.2e-11 71.6 49 67.3
SGA_v2.0_scaffold199G41179 Striga asiatica HOM05D004613 ORTHO05D006095 3.2e-11 71.6 46 78.3
CiPaw.08G167100 Carya illinoinensis HOM05D004613 ORTHO05D006095 4.1e-11 71.2 49 71.4
Gohir.A08G212400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 4.1e-11 71.2 49 71.4
Gohir.D08G229400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 4.1e-11 71.2 49 71.4
Gorai.004G243600 Gossypium raimondii HOM05D004613 ORTHO05D006095 4.1e-11 71.2 49 71.4
Nn1g02102 Nelumbo nucifera HOM05D004613 ORTHO05D006095 4.1e-11 71.2 49 71.4
QL03p004304 Quercus lobata HOM05D004613 ORTHO05D006095 4.1e-11 71.2 48 75.0
MSTRG.20469 Avicennia marina HOM05D004613 ORTHO05D006095 5.4e-11 70.9 48 72.9
ECA232G1001 Erigeron canadensis HOM05D004613 ORTHO05D006095 5.4e-11 70.9 50 66.0
CANSAT54G0471 Cannabis sativa HOM05D004613 ORTHO05D006095 7.1e-11 70.5 49 69.4
Aqoxy2G03209 Aquilegia oxysepala HOM05D004613 ORTHO05D006095 9.2e-11 70.1 49 69.4
CSS0015750 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 9.2e-11 70.1 49 71.4
Ciclev10001987m.g Citrus clementina HOM05D004613 ORTHO05D006095 9.2e-11 70.1 49 67.3
MELO3C015343.2 Cucumis melo HOM05D004613 ORTHO05D006095 9.2e-11 70.1 49 73.5
Peaxi162Scf00434g00335 Petunia axillaris HOM05D004613 ORTHO05D006095 9.2e-11 70.1 49 69.4
Dinv40253 Davidia involucrata HOM05D004613 ORTHO05D006095 1.2e-10 69.7 49 69.4
Eucgr.B02002 Eucalyptus grandis HOM05D004613 ORTHO05D006095 1.2e-10 69.7 49 71.4
PGR083G0604 Punica granatum HOM05D004613 ORTHO05D006095 1.2e-10 69.7 72 50.0
CAN.G1134.17 Capsicum annuum HOM05D004613 ORTHO05D006095 1.6e-10 69.3 49 67.3
Cc02_g32610 Coffea canephora HOM05D004613 ORTHO05D006095 1.6e-10 69.3 49 67.3
Potri.013G026700 Populus trichocarpa HOM05D004613 ORTHO05D006095 1.6e-10 69.3 49 65.3
Prupe.6G330700 Prunus persica HOM05D004613 ORTHO05D006095 1.6e-10 69.3 125 36.8
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 1.6e-10 69.3 53 62.3
Solyc01g098630.3 Solanum lycopersicum HOM05D004613 ORTHO05D006095 1.6e-10 69.3 49 67.3
Lsat_1_v5_gn_8_116060 Lactuca sativa HOM05D004613 ORTHO05D006095 2.1e-10 68.9 50 64.0
Lj5g0014952 Lotus japonicus HOM05D004613 ORTHO05D006095 2.1e-10 68.9 66 56.1
PGR083G1611 Punica granatum HOM05D004613 ORTHO05D006095 2.1e-10 68.9 130 34.6
GSVIVG01022058001 Vitis vinifera HOM05D004613 ORTHO05D006095 2.1e-10 68.9 49 63.3
MD12G1224400 Malus domestica HOM05D004613 ORTHO05D006095 2.7e-10 68.6 49 71.4
vmacro05035 Vaccinium macrocarpon HOM05D004613 ORTHO05D006095 2.7e-10 68.6 49 69.4
arahy.Tifrunner.gnm1.ann1.LT91QM Arachis hypogaea HOM05D004613 ORTHO05D006095 3.5e-10 68.2 50 66.0
Duzib128G1218 Durio zibethinus HOM05D004613 ORTHO05D006095 3.5e-10 68.2 124 37.1
HanXRQChr09g0258721 Helianthus annuus HOM05D004613 ORTHO05D006095 3.5e-10 68.2 50 64.0
Nitab4.5_0015025g0020 Nicotiana tabacum HOM05D004613 ORTHO05D006095 3.5e-10 68.2 49 67.3
PGSC0003DMG400028600 Solanum tuberosum HOM05D004613 ORTHO05D006095 3.5e-10 68.2 49 65.3
MBI17_g29025_MAGBIO Magnolia biondii HOM05D004613 ORTHO05D006095 4.6e-10 67.8 51 68.6
Phvul.007G182600 Phaseolus vulgaris HOM05D004613 ORTHO05D006095 4.6e-10 67.8 49 67.3
Sed0016876 Sechium edule HOM05D004613 ORTHO05D006095 4.6e-10 67.8 49 67.3
Sopen01g042180 Solanum pennellii HOM05D004613 ORTHO05D006095 4.6e-10 67.8 49 65.3
arahy.Tifrunner.gnm1.ann1.R33V11 Arachis hypogaea HOM05D004613 ORTHO05D006095 6.0e-10 67.4 72 50.0
Oeu012099.1 Olea europaea HOM05D004613 ORTHO05D006095 6.0e-10 67.4 49 67.3
Nitab4.5_0004940g0150 Nicotiana tabacum HOM05D004613 ORTHO05D006095 7.8e-10 67.0 49 67.3
EL10Ac4g09300 Beta vulgaris HOM05D004613 ORTHO05D006095 1.0e-09 66.6 50 64.0
PSO170G6761 Papaver somniferum HOM05D004613 ORTHO05D006095 1.0e-09 66.6 49 65.3
PSO407G0072 Papaver somniferum HOM05D004613 ORTHO05D006095 1.0e-09 66.6 49 65.3
RcHm_v2.0_Chr3g0454031 Rosa chinensis HOM05D004613 ORTHO05D006095 1.0e-09 66.6 49 67.3
CDE12G0359 Ceratophyllum demersum HOM05D004613 ORTHO05D006095 1.3e-09 66.2 50 66.0
TAR365G0571 Trochodendron aralioides HOM05D004613 ORTHO05D006095 1.3e-09 66.2 49 63.3
Sc09g0003370 Simmondsia chinensis HOM05D004613 ORTHO05D006095 1.7e-09 65.9 49 63.3
Cfa006537 Carpinus fangiana HOM05D004613 ORTHO05D006095 2.3e-09 65.5 49 67.3
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 2.3e-09 65.5 49 61.2
Medtr1g082380 Medicago truncatula HOM05D004613 ORTHO05D006095 2.3e-09 65.5 49 57.1
Thecc.05G300000 Theobroma cacao HOM05D004613 ORTHO05D006095 3.0e-09 65.1 49 63.3
COL.COLO4_13522 Corchorus olitorius HOM05D004613 ORTHO05D006095 3.9e-09 64.7 49 63.3
SHI18214 Sapria himalayana HOM05D004613 ORTHO05D006095 3.9e-09 64.7 48 68.8
SEGI_25140 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 5.1e-09 64.3 51 68.6
VMungo0720G0951 Vigna mungo HOM05D004613 ORTHO05D006095 5.1e-09 64.3 49 65.3
ATR0626G318 Amborella trichopoda HOM05D004613 ORTHO05D006095 1.5e-08 62.8 50 64.0
Haze_04249 Corylus avellana HOM05D004613 ORTHO05D006095 1.5e-08 62.8 49 65.3
FvH4_6g05290 Fragaria vesca HOM05D004613 ORTHO05D006095 1.5e-08 62.8 49 63.3
FAN02G3501 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.5e-08 62.8 49 63.3
FAN05G4103 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.5e-08 62.8 49 63.3
FAN14G3061 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.5e-08 62.8 49 63.3
FAN14G4578 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.5e-08 62.8 49 63.3
BcaB04g19666 Brassica carinata HOM05D004613 ORTHO05D006095 1.9e-08 62.4 52 63.5
Glyma.20G231400 Glycine max HOM05D004613 ORTHO05D006095 1.9e-08 62.4 49 65.3
HPP92_006941 Vanilla planifolia HOM05D004613 ORTHO05D006095 1.9e-08 62.4 51 62.7
FAN05G3359 Fragaria x ananassa HOM05D004613 ORTHO05D006095 3.3e-08 61.6 46 65.2
FAN09G4458 Fragaria x ananassa HOM05D004613 ORTHO05D006095 3.3e-08 61.6 49 61.2
Lalb_Chr02g0148411 Lupinus albus HOM05D004613 ORTHO05D006095 3.3e-08 61.6 49 55.1
MD04G1209800 Malus domestica HOM05D004613 ORTHO05D006095 7.3e-08 60.5 49 65.3
Zm00001eb329390 Zea mays HOM05D004613 ORTHO05D006095 6.2e-07 57.4 50 54.0


User provided reference genes

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