Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p05050 Brassica napus HOM05D005991 ORTHO05D007408 4.2e-117 424.9 237 100.0
BraA09t36144Z Brassica rapa HOM05D005991 ORTHO05D007408 4.2e-117 424.9 237 100.0
BcaB04g19640 Brassica carinata HOM05D005991 ORTHO05D007408 3.9e-107 391.7 238 93.3
BcaC04g23714 Brassica carinata HOM05D005991 ORTHO05D007408 9.0e-104 380.6 237 93.7
C09p05460 Brassica napus HOM05D005991 ORTHO05D007408 2.6e-103 379.0 239 92.9
BolC9t53475H Brassica oleracea HOM05D005991 ORTHO05D007408 4.3e-98 361.7 264 83.3
Sp6g09550 Schrenkiella parvula HOM05D005991 ORTHO05D007408 4.2e-93 345.1 246 82.9
Sp2g19950 Schrenkiella parvula HOM05D005991 ORTHO05D007408 2.1e-92 342.8 246 81.7
BcaNung02118 Brassica carinata HOM05D005991 ORTHO05D007408 1.5e-90 336.7 241 83.0
C07p40040 Brassica napus HOM05D005991 ORTHO05D007408 1.5e-90 336.7 241 83.0
BolC7t44538H Brassica oleracea HOM05D005991 ORTHO05D007408 1.5e-90 336.7 240 82.9
BraA06t26732Z Brassica rapa HOM05D005991 ORTHO05D007408 2.5e-90 335.9 240 82.1
A06p38170 Brassica napus HOM05D005991 ORTHO05D007408 1.7e-89 333.2 240 81.2
Aa31LG11G8380 Aethionema arabicum HOM05D005991 ORTHO05D007408 1.2e-87 327.0 247 76.5
Carub.0020s0004 Capsella rubella HOM05D005991 ORTHO05D007408 2.9e-86 322.4 240 80.4
AL6G41020 Arabidopsis lyrata HOM05D005991 ORTHO05D007408 1.4e-85 320.1 241 79.7
Thhalv10004825m.g Eutrema salsugineum HOM05D005991 ORTHO05D007408 2.5e-85 319.3 250 74.8
AT5G30490 Arabidopsis thaliana HOM05D005991 ORTHO05D007408 4.7e-84 315.1 239 79.1
CARHR185530 Cardamine hirsuta HOM05D005991 ORTHO05D007408 2.7e-76 289.3 243 70.4
BcaC06g30693 Brassica carinata HOM05D005991 ORTHO05D007408 5.0e-70 268.5 252 67.9
THA.LOC104827106 Tarenaya hassleriana HOM05D005991 ORTHO05D007408 9.4e-69 264.2 239 66.9
Cfa015696 Carpinus fangiana HOM05D005991 ORTHO05D007408 6.1e-60 235.0 231 59.7
Haze_00826 Corylus avellana HOM05D005991 ORTHO05D007408 8.0e-60 234.6 231 59.7
Sed0009947 Sechium edule HOM05D005991 ORTHO05D007408 2.4e-56 223.0 240 56.7
Psat0s2692g0080 Pisum sativum HOM05D005991 ORTHO05D007408 3.1e-56 222.6 223 61.0
PGR004G0142 Punica granatum HOM05D005991 ORTHO05D007408 7.0e-56 221.5 234 55.6
ClCG06G004330 Citrullus lanatus HOM05D005991 ORTHO05D007408 1.2e-55 220.7 229 57.2
Lalb_Chr13g0298761 Lupinus albus HOM05D005991 ORTHO05D007408 2.0e-55 219.9 227 58.1
CsaV3_6G000060 Cucumis sativus L. HOM05D005991 ORTHO05D007408 1.0e-54 217.6 240 55.8
MELO3C021248.2 Cucumis melo HOM05D005991 ORTHO05D007408 1.3e-54 217.2 237 55.3
TWI73G0156 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 1.3e-54 217.2 226 61.1
Dinv05101 Davidia involucrata HOM05D005991 ORTHO05D007408 5.0e-54 215.3 241 56.4
CSS0003210 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 6.6e-54 214.9 245 53.1
MBI18_g36460_MAGBIO Magnolia biondii HOM05D005991 ORTHO05D007408 8.6e-54 214.5 219 56.6
Manes.03G209000 Manihot esculenta HOM05D005991 ORTHO05D007408 1.1e-53 214.2 211 60.7
Rhsim02G0001600 Rhododendron simsii HOM05D005991 ORTHO05D007408 1.1e-53 214.2 238 55.5
TWI53G1476 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 1.5e-53 213.8 227 59.5
Glyma.07G232800 Glycine max HOM05D005991 ORTHO05D007408 1.9e-53 213.4 229 57.6
MSTRG.22639 Avicennia marina HOM05D005991 ORTHO05D007408 3.3e-53 212.6 225 56.4
MD13G1147500 Malus domestica HOM05D005991 ORTHO05D007408 7.2e-53 211.5 248 55.2
Medtr4g123060 Medicago truncatula HOM05D005991 ORTHO05D007408 7.2e-53 211.5 220 59.1
Migut.I00898 Erythranthe guttata HOM05D005991 ORTHO05D007408 9.5e-53 211.1 247 53.4
Potri.010G151300 Populus trichocarpa HOM05D005991 ORTHO05D007408 9.5e-53 211.1 229 53.7
vmacro19301 Vaccinium macrocarpon HOM05D005991 ORTHO05D007408 9.5e-53 211.1 216 56.0
Lj4g0017646 Lotus japonicus HOM05D005991 ORTHO05D007408 1.2e-52 210.7 246 55.3
Cpa.g.sc146.66 Carica papaya HOM05D005991 ORTHO05D007408 1.6e-52 210.3 243 54.7
FvH4_4g20890 Fragaria vesca HOM05D005991 ORTHO05D007408 1.6e-52 210.3 241 54.8
FAN17G2933 Fragaria x ananassa HOM05D005991 ORTHO05D007408 1.6e-52 210.3 241 55.6
Os01g0328500 Oryza sativa ssp. japonica HOM05D005991 ORTHO05D007408 1.6e-52 210.3 235 52.8
FAN12G0391 Fragaria x ananassa HOM05D005991 ORTHO05D007408 2.8e-52 209.5 231 56.3
RcHm_v2.0_Chr4g0426321 Rosa chinensis HOM05D005991 ORTHO05D007408 2.8e-52 209.5 244 54.9
FAN07G2713 Fragaria x ananassa HOM05D005991 ORTHO05D007408 3.6e-52 209.1 231 56.3
GSVIVG01017637001 Vitis vinifera HOM05D005991 ORTHO05D007408 4.7e-52 208.8 240 53.8
TWI09G0093 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 1.0e-51 207.6 225 58.7
Eucgr.H04085 Eucalyptus grandis HOM05D005991 ORTHO05D007408 3.0e-51 206.1 231 53.2
QL06p013384 Quercus lobata HOM05D005991 ORTHO05D007408 4.0e-51 205.7 232 55.6
Zm00001eb131050 Zea mays HOM05D005991 ORTHO05D007408 4.0e-51 205.7 219 55.3
Ciclev10005452m.g Citrus clementina HOM05D005991 ORTHO05D007408 8.9e-51 204.5 241 54.8
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 8.9e-51 204.5 244 52.0
TPR.G12610 Trifolium pratense HOM05D005991 ORTHO05D007408 1.5e-50 203.8 231 55.8
Atru.chr4.3094 Acer truncatum HOM05D005991 ORTHO05D007408 2.0e-50 203.4 236 54.2
Prupe.1G111000 Prunus persica HOM05D005991 ORTHO05D007408 7.5e-50 201.4 247 54.3
EL10Ac2g02410 Beta vulgaris HOM05D005991 ORTHO05D007408 9.8e-50 201.1 248 52.0
DCAR_019078 Daucus carota HOM05D005991 ORTHO05D007408 9.8e-50 201.1 243 51.4
CiPaw.01G133100 Carya illinoinensis HOM05D005991 ORTHO05D007408 1.3e-49 200.7 181 68.0
Phvul.003G118700 Phaseolus vulgaris HOM05D005991 ORTHO05D007408 1.3e-49 200.7 229 55.5
TAR633G0953 Trochodendron aralioides HOM05D005991 ORTHO05D007408 1.3e-49 200.7 224 55.8
Ca_21401_v3 Cicer arietinum L. HOM05D005991 ORTHO05D007408 2.2e-49 199.9 228 56.1
Actinidia18486 Actinidia chinensis HOM05D005991 ORTHO05D007408 4.9e-49 198.7 209 59.8
Sc23g0006090 Simmondsia chinensis HOM05D005991 ORTHO05D007408 4.9e-49 198.7 219 53.4
Oeu009727.1 Olea europaea HOM05D005991 ORTHO05D007408 1.4e-48 197.2 248 50.0
Glyma.17G037800 Glycine max HOM05D005991 ORTHO05D007408 3.2e-48 196.1 229 55.5
Lj9A696T49 Lonicera japonica HOM05D005991 ORTHO05D007408 4.1e-48 195.7 250 50.0
unitig_32.g11589 Utricularia gibba HOM05D005991 ORTHO05D007408 4.1e-48 195.7 245 51.8
Ah.11g042100 Amaranthus hybridus HOM05D005991 ORTHO05D007408 9.2e-48 194.5 233 50.2
Actinidia28298 Actinidia chinensis HOM05D005991 ORTHO05D007408 1.2e-47 194.1 242 52.9
VMungo1215G0582 Vigna mungo HOM05D005991 ORTHO05D007408 1.2e-47 194.1 229 53.7
Zm00001eb340570 Zea mays HOM05D005991 ORTHO05D007408 1.3e-46 190.7 211 54.5
Nitab4.5_0013885g0020 Nicotiana tabacum HOM05D005991 ORTHO05D007408 2.3e-46 189.9 247 51.4
Gohir.D02G061600 Gossypium hirsutum HOM05D005991 ORTHO05D007408 3.9e-46 189.1 251 48.2
Gorai.005G069300 Gossypium raimondii HOM05D005991 ORTHO05D007408 3.9e-46 189.1 251 48.2
Nitab4.5_0003374g0080 Nicotiana tabacum HOM05D005991 ORTHO05D007408 3.9e-46 189.1 246 50.4
Gohir.A02G056400 Gossypium hirsutum HOM05D005991 ORTHO05D007408 8.6e-46 188.0 251 47.8
TAR362G0621 Trochodendron aralioides HOM05D005991 ORTHO05D007408 8.6e-46 188.0 224 54.5
Duzib151G0057 Durio zibethinus HOM05D005991 ORTHO05D007408 2.5e-45 186.4 213 54.0
Lsat_1_v5_gn_4_27741 Lactuca sativa HOM05D005991 ORTHO05D007408 2.5e-45 186.4 233 49.8
HanXRQChr16g0526201 Helianthus annuus HOM05D005991 ORTHO05D007408 3.3e-45 186.0 227 51.1
ECA234G0222 Erigeron canadensis HOM05D005991 ORTHO05D007408 5.6e-45 185.3 248 48.8
MD16G1145900 Malus domestica HOM05D005991 ORTHO05D007408 7.3e-45 184.9 219 53.9
arahy.Tifrunner.gnm1.ann1.ELD4MI Arachis hypogaea HOM05D005991 ORTHO05D007408 1.2e-44 184.1 223 53.4
arahy.Tifrunner.gnm1.ann1.5JMV2K Arachis hypogaea HOM05D005991 ORTHO05D007408 2.1e-44 183.3 223 53.8
Nn3g21864 Nelumbo nucifera HOM05D005991 ORTHO05D007408 2.1e-44 183.3 223 52.9
Aqoxy7G00454 Aquilegia oxysepala HOM05D005991 ORTHO05D007408 3.6e-44 182.6 231 52.8
Sopen04g029760 Solanum pennellii HOM05D005991 ORTHO05D007408 4.7e-44 182.2 238 49.6
Thecc.04G307900 Theobroma cacao HOM05D005991 ORTHO05D007408 3.1e-43 179.5 233 52.4
HPP92_017296 Vanilla planifolia HOM05D005991 ORTHO05D007408 4.0e-43 179.1 239 49.0
PGSC0003DMG400030844 Solanum tuberosum HOM05D005991 ORTHO05D007408 6.8e-43 178.3 242 47.9
CAN.G1173.8 Capsicum annuum HOM05D005991 ORTHO05D007408 8.9e-43 177.9 246 48.0
ATR0693G149 Amborella trichopoda HOM05D005991 ORTHO05D007408 2.0e-42 176.8 239 51.5
COL.COLO4_34551 Corchorus olitorius HOM05D005991 ORTHO05D007408 2.0e-42 176.8 189 58.7
Peaxi162Scf00139g00312 Petunia axillaris HOM05D005991 ORTHO05D007408 3.4e-42 176.0 237 49.4
CANSAT78G1707 Cannabis sativa HOM05D005991 ORTHO05D007408 4.4e-42 175.6 230 49.6
Cc10_g13510 Coffea canephora HOM05D005991 ORTHO05D007408 1.4e-40 170.6 236 47.9
PSO017G0870 Papaver somniferum HOM05D005991 ORTHO05D007408 1.9e-40 170.2 217 51.2
Cc00_g31090 Coffea canephora HOM05D005991 ORTHO05D007408 5.4e-40 168.7 223 48.4
Solyc04g074800.3 Solanum lycopersicum HOM05D005991 ORTHO05D007408 1.2e-39 167.5 245 46.9
PSO675G8194 Papaver somniferum HOM05D005991 ORTHO05D007408 2.0e-39 166.8 217 50.2
arahy.Tifrunner.gnm1.ann1.KWD76U Arachis hypogaea HOM05D005991 ORTHO05D007408 5.0e-38 162.2 223 48.9
PGR119G0116 Punica granatum HOM05D005991 ORTHO05D007408 2.2e-33 146.7 118 66.9
AUR62037721 Chenopodium quinoa HOM05D005991 ORTHO05D007408 1.4e-32 144.1 118 66.9
AUR62020284 Chenopodium quinoa HOM05D005991 ORTHO05D007408 3.2e-32 142.9 118 66.1
SEGI_07358 Sequoiadendron giganteum HOM05D005991 ORTHO05D007408 5.4e-32 142.1 239 43.5
Mapoly0030s0047 Marchantia polymorpha HOM05D005991 ORTHO05D007408 4.6e-31 139.0 230 42.6
Cre14.g632600 Chlamydomonas reinhardtii HOM05D005991 ORTHO05D007408 3.1e-27 126.3 162 48.1
CDE05G0304 Ceratophyllum demersum HOM05D005991 ORTHO05D007408 9.9e-26 121.3 161 50.9
arahy.Tifrunner.gnm1.ann1.FWR109 Arachis hypogaea HOM05D005991 ORTHO05D007408 7.1e-24 115.2 118 60.2
Pp3c5_15500 Physcomitrium patens HOM05D005991 ORTHO05D007408 3.5e-23 112.8 237 35.9
AagrBONN_evm.TU.Sc2ySwM_117.1275 Anthoceros agrestis HOM05D005991 ORTHO05D007408 6.0e-23 112.1 130 51.5
SMO203G0019 Selaginella moellendorffii HOM05D005991 ORTHO05D007408 1.7e-22 110.5 226 40.7
CBR_g56129 Chara braunii HOM05D005991 ORTHO05D007408 3.9e-22 109.4 131 48.9
CSS0020858 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 3.3e-21 106.3 127 53.5
MCO08G234 Micromonas commoda HOM05D005991 ORTHO05D007408 5.1e-14 82.4 194 35.1
AL1G65220 Arabidopsis lyrata HOM05D005991 ORTHO05D007408 8.1e-12 75.1 78 65.4
PRCOL_00003370 Prasinoderma coloniale HOM05D005991 ORTHO05D007408 1.7e-09 67.4 151 35.1
Sabra10G0116500 Salix brachista HOM05D005991 ORTHO05D007408 8.7e-06 55.1 115 31.3


User provided reference genes

Program Settings