Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p03260 Brassica napus HOM05D001420 ORTHO05D009292 2.7e-95 352.1 183 100.0
BraA09t35964Z Brassica rapa HOM05D001420 ORTHO05D009292 2.7e-95 352.1 183 100.0
BolC9t53267H Brassica oleracea HOM05D001420 ORTHO05D009292 2.2e-94 349.0 183 98.9
C09p03460 Brassica napus HOM05D001420 ORTHO05D009292 6.5e-94 347.4 183 98.4
BcaC04g23914 Brassica carinata HOM05D001420 ORTHO05D009292 4.7e-92 341.3 183 97.8
BcaB04g19424 Brassica carinata HOM05D001420 ORTHO05D009292 3.7e-89 331.6 183 94.5
Sp2g16180 Schrenkiella parvula HOM05D001420 ORTHO05D009292 1.3e-86 323.2 183 93.4
AL5G16160 Arabidopsis lyrata HOM05D001420 ORTHO05D009292 5.0e-86 321.2 181 93.4
Thhalv10004992m.g Eutrema salsugineum HOM05D001420 ORTHO05D009292 1.1e-85 320.1 183 91.3
AT3G27050 Arabidopsis thaliana HOM05D001420 ORTHO05D009292 1.6e-84 316.2 182 91.8
Carub.0005s0529 Capsella rubella HOM05D001420 ORTHO05D009292 2.2e-81 305.8 182 88.5
CARHR148270 Cardamine hirsuta HOM05D001420 ORTHO05D009292 1.1e-80 303.5 183 86.3
Aa31LG2G5540 Aethionema arabicum HOM05D001420 ORTHO05D009292 1.3e-78 296.6 183 84.7
THA.LOC104825624 Tarenaya hassleriana HOM05D001420 ORTHO05D009292 8.9e-75 283.9 178 79.2
Haze_14879 Corylus avellana HOM05D001420 ORTHO05D009292 3.9e-62 241.9 176 69.3
Prupe.3G306700 Prunus persica HOM05D001420 ORTHO05D009292 8.6e-62 240.7 178 69.1
Thecc.04G036700 Theobroma cacao HOM05D001420 ORTHO05D009292 1.5e-61 240.0 181 66.9
Potri.001G329600 Populus trichocarpa HOM05D001420 ORTHO05D009292 2.5e-61 239.2 180 70.0
GSVIVG01033089001 Vitis vinifera HOM05D001420 ORTHO05D009292 2.5e-61 239.2 179 68.7
MD09G1010400 Malus domestica HOM05D001420 ORTHO05D009292 3.3e-61 238.8 175 69.1
vmacro18348 Vaccinium macrocarpon HOM05D001420 ORTHO05D009292 3.3e-61 238.8 179 67.0
Dinv25658 Davidia involucrata HOM05D001420 ORTHO05D002488 1.6e-60 236.5 181 66.9
Migut.F00060 Erythranthe guttata HOM05D001420 ORTHO05D009292 2.1e-60 236.1 175 67.4
Nitab4.5_0005161g0070 Nicotiana tabacum HOM05D001420 ORTHO05D009292 4.7e-60 235.0 180 66.7
Cpa.g.sc171.11 Carica papaya HOM05D001420 ORTHO05D009292 6.2e-60 234.6 181 66.9
MBI11_g44423_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 6.2e-60 234.6 176 68.2
Lj1g0001542 Lotus japonicus HOM05D001420 ORTHO05D009292 8.1e-60 234.2 182 66.5
QL02p071311 Quercus lobata HOM05D001420 ORTHO05D009292 8.1e-60 234.2 182 65.4
Glyma.19G091500 Glycine max HOM05D001420 ORTHO05D009292 1.4e-59 233.4 179 67.6
Oeu035224.1 Olea europaea HOM05D001420 ORTHO05D009292 1.8e-59 233.0 179 68.7
RcHm_v2.0_Chr2g0175601 Rosa chinensis HOM05D001420 ORTHO05D009292 3.1e-59 232.3 181 66.3
FvH4_6g53561 Fragaria vesca HOM05D001420 ORTHO05D009292 5.2e-59 231.5 178 66.3
Sc15g0002740 Simmondsia chinensis HOM05D001420 ORTHO05D009292 5.2e-59 231.5 170 70.6
CSS0004965 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 8.9e-59 230.7 179 67.0
arahy.Tifrunner.gnm1.ann1.WDB61R Arachis hypogaea HOM05D001420 ORTHO05D009292 1.2e-58 230.3 183 66.1
MSTRG.3074 Avicennia marina HOM05D001420 ORTHO05D009292 1.2e-58 230.3 177 66.7
PGR142G3591 Punica granatum HOM05D001420 ORTHO05D009292 2.0e-58 229.6 179 66.5
Gohir.A09G036000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 2.6e-58 229.2 176 65.9
Medtr7g029105 Medicago truncatula HOM05D001420 ORTHO05D009292 2.6e-58 229.2 175 67.4
SGA_v2.0_scaffold44G16915 Striga asiatica HOM05D001420 ORTHO05D009292 2.6e-58 229.2 177 65.5
Manes.15G161200 Manihot esculenta HOM05D001420 ORTHO05D009292 3.4e-58 228.8 176 67.6
FAN09G1657 Fragaria x ananassa HOM05D001420 ORTHO05D009292 4.4e-58 228.4 178 64.6
Gorai.006G042300 Gossypium raimondii HOM05D001420 ORTHO05D009292 5.8e-58 228.0 178 64.0
TPR.G38286 Trifolium pratense HOM05D001420 ORTHO05D009292 5.8e-58 228.0 178 65.7
Duzib147G1300 Durio zibethinus HOM05D001420 ORTHO05D009292 7.5e-58 227.6 179 64.2
Eucgr.I01645 Eucalyptus grandis HOM05D001420 ORTHO05D009292 1.3e-57 226.9 182 65.9
Glyma.16G056200 Glycine max HOM05D001420 ORTHO05D009292 1.7e-57 226.5 175 65.7
Actinidia04437 Actinidia chinensis HOM05D001420 ORTHO05D009292 2.2e-57 226.1 172 66.9
TWI60G0015 Tripterygium wilfordii HOM05D001420 ORTHO05D009292 2.2e-57 226.1 182 64.3
Cc07_g00860 Coffea canephora HOM05D001420 ORTHO05D009292 2.9e-57 225.7 175 66.9
Psat3g174720 Pisum sativum HOM05D001420 ORTHO05D002488 2.9e-57 225.7 174 66.7
FAN05G4256 Fragaria x ananassa HOM05D001420 ORTHO05D009292 8.3e-57 224.2 189 60.3
TAR622G0082 Trochodendron aralioides HOM05D001420 ORTHO05D009292 8.3e-57 224.2 171 66.7
Nitab4.5_0000559g0390 Nicotiana tabacum HOM05D001420 ORTHO05D009292 1.4e-56 223.4 187 63.1
CANSAT64G1297 Cannabis sativa HOM05D001420 ORTHO05D009292 1.9e-56 223.0 175 65.7
AUR62017830 Chenopodium quinoa HOM05D001420 ORTHO05D009292 3.2e-56 222.2 174 66.1
AUR62003518 Chenopodium quinoa HOM05D001420 ORTHO05D009292 4.1e-56 221.9 174 65.5
CSS0009369 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 5.4e-56 221.5 193 62.2
Hma1.2p1_1278F.1_g272270 Hydrangea macrophylla HOM05D001420 ORTHO05D009292 9.2e-56 220.7 182 63.2
VMungo1383G3091 Vigna mungo HOM05D001420 ORTHO05D009292 2.1e-55 219.5 177 64.4
Lalb_Chr22g0360361 Lupinus albus HOM05D001420 ORTHO05D009292 2.7e-55 219.2 174 64.9
FAN14G1551 Fragaria x ananassa HOM05D001420 ORTHO05D000136 3.5e-55 218.8 168 66.1
Nn3g16459 Nelumbo nucifera HOM05D001420 ORTHO05D009292 3.0e-54 215.7 175 63.4
Rhsim08G0042700 Rhododendron simsii HOM05D001420 ORTHO05D009292 2.5e-53 212.6 172 63.4
PSO478G4377 Papaver somniferum HOM05D001420 ORTHO05D009292 3.3e-53 212.2 171 63.2
PGSC0003DMG400022915 Solanum tuberosum HOM05D001420 ORTHO05D009292 3.6e-52 208.8 175 61.1
Sabra16G0211000 Salix brachista HOM05D001420 ORTHO05D009292 8.1e-52 207.6 254 49.2
ATR0561G272 Amborella trichopoda HOM05D001420 ORTHO05D009292 1.1e-51 207.2 173 59.5
unitig_60.g25408 Utricularia gibba HOM05D001420 ORTHO05D009292 1.4e-51 206.8 180 60.6
Aqoxy3G01555 Aquilegia oxysepala HOM05D001420 ORTHO05D009292 5.2e-51 204.9 171 62.6
HanXRQChr17g0550091 Helianthus annuus HOM05D001420 ORTHO05D009292 1.5e-50 203.4 161 64.6
ClCG05G013550 Citrullus lanatus HOM05D001420 ORTHO05D009292 2.0e-50 203.0 167 64.7
PSO017G5378 Papaver somniferum HOM05D001420 ORTHO05D009292 5.8e-50 201.4 181 59.1
Cfa007225 Carpinus fangiana HOM05D001420 ORTHO05D009292 7.6e-50 201.1 144 70.1
SalBow4G1795 Salvia bowleyana HOM05D001420 ORTHO05D009292 1.3e-49 200.3 176 59.1
HPP92_009721 Vanilla planifolia HOM05D001420 ORTHO05D009292 1.7e-49 199.9 171 63.2
Haze_14955 Corylus avellana HOM05D001420 ORTHO05D009292 2.9e-49 199.1 142 71.1
CsaV3_3G026980 Cucumis sativus L. HOM05D001420 ORTHO05D009292 2.9e-49 199.1 172 61.6
Sed0020252 Sechium edule HOM05D001420 ORTHO05D009292 3.2e-48 195.7 169 63.3
Lsat_1_v5_gn_0_26060 Lactuca sativa HOM05D001420 ORTHO05D009292 7.1e-48 194.5 161 59.6
CDE05G2056 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 1.2e-47 193.7 171 57.9
Atru.chr6.2574 Acer truncatum HOM05D001420 ORTHO05D009292 2.7e-47 192.6 147 66.7
Gohir.D09G037000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 1.0e-46 190.7 144 65.3
ECA246G1005 Erigeron canadensis HOM05D001420 ORTHO05D002488 1.5e-45 186.8 162 57.4
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 1.9e-45 186.4 150 66.0
SalBow4G0299 Salvia bowleyana HOM05D001420 ORTHO05D009292 9.6e-45 184.1 207 50.2
SEGI_21368 Sequoiadendron giganteum HOM05D001420 ORTHO05D009292 2.8e-44 182.6 165 54.5
Ciclev10017089m.g Citrus clementina HOM05D001420 ORTHO05D009292 1.4e-43 180.3 141 65.2
Peaxi162Scf00700g00030 Petunia axillaris HOM05D001420 ORTHO05D009292 2.4e-43 179.5 141 65.2
RcHm_v2.0_Chr2g0175681 Rosa chinensis HOM05D001420 ORTHO05D009292 4.4e-42 175.3 139 66.2
Phvul.001G093200 Phaseolus vulgaris HOM05D001420 ORTHO05D009292 5.8e-42 174.9 179 53.6
MELO3C014890.2 Cucumis melo HOM05D001420 ORTHO05D009292 1.7e-41 173.3 147 63.3
Os11g0488600 Oryza sativa ssp. japonica HOM05D001420 ORTHO05D009292 2.9e-41 172.6 176 55.1
Dinv33335 Davidia involucrata HOM05D001420 ORTHO05D009292 1.4e-40 170.2 122 68.9
AagrBONN_evm.TU.Sc2ySwM_228.3079 Anthoceros agrestis HOM05D001420 ORTHO05D009292 1.2e-39 167.2 172 47.7
Pp3c1_27230 Physcomitrium patens HOM05D001420 ORTHO05D009292 1.6e-39 166.8 162 51.9
Zm00001eb112760 Zea mays HOM05D001420 ORTHO05D009292 6.0e-39 164.9 200 48.0
Pp3c14_4200 Physcomitrium patens HOM05D001420 ORTHO05D009292 3.9e-38 162.2 162 48.8
Lj7C610G7 Lonicera japonica HOM05D001420 ORTHO05D009292 8.1e-36 154.5 118 64.4
Ah.03g147520 Amaranthus hybridus HOM05D001420 ORTHO05D009292 3.1e-35 152.5 141 60.3
SMO119G0238 Selaginella moellendorffii HOM05D001420 ORTHO05D009292 7.6e-34 147.9 142 54.2
MD16G1254400 Malus domestica HOM05D001420 ORTHO05D009292 1.9e-32 143.3 124 61.3
CBR_g762 Chara braunii HOM05D001420 ORTHO05D009292 3.1e-27 125.9 161 42.2
CDE05G0537 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 4.5e-26 122.1 118 54.2
DCAR_021795 Daucus carota HOM05D001420 ORTHO05D009292 2.2e-17 93.2 88 54.5
CiPaw.03G055800 Carya illinoinensis HOM05D001420 ORTHO05D002488 3.2e-16 89.4 59 74.6
FAN02G0503 Fragaria x ananassa HOM05D001420 ORTHO05D009292 2.7e-15 86.3 70 61.4
Hund12739 Selenicereus undatus HOM05D001420 ORTHO05D009292 2.4e-11 73.2 52 71.2
Cre01.g049050 Chlamydomonas reinhardtii HOM05D001420 ORTHO05D009292 1.4e-08 63.9 149 28.2
Nitab4.5_0000525g0030 Nicotiana tabacum HOM05D001420 ORTHO05D009292 1.2e-07 60.8 40 75.0


User provided reference genes

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