Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p02290 Brassica napus HOM05D003286 ORTHO05D020140 8.4e-307 1056.2 539 100.0
BraA09t35878Z Brassica rapa HOM05D003286 ORTHO05D020140 8.4e-307 1056.2 539 100.0
C09p02390 Brassica napus HOM05D003286 ORTHO05D020140 4.5e-127 459.1 539 54.4
BolC9t53170H Brassica oleracea HOM05D003286 ORTHO05D020140 4.4e-122 442.6 538 53.2
C09p02400 Brassica napus HOM05D003286 ORTHO05D020140 1.1e-96 358.2 539 44.9
BolC9t53171H Brassica oleracea HOM05D003286 ORTHO05D020140 5.4e-96 355.9 536 44.8
BcaB01g01994 Brassica carinata HOM05D003286 ORTHO05D020140 9.0e-75 285.4 263 64.3
C09p02380 Brassica napus HOM05D003286 ORTHO05D021628 1.2e-42 178.7 341 39.3
BolC9t53169H Brassica oleracea HOM05D003286 ORTHO05D021628 1.0e-38 165.6 369 36.0
BraA09t35877Z Brassica rapa HOM05D003286 ORTHO05D021628 5.1e-38 163.3 372 35.5
BcaB01g01995 Brassica carinata HOM05D011698 ORTHO05D021628 8.8e-38 162.5 372 37.4
Sp6g03010 Schrenkiella parvula HOM05D003286 ORTHO05D013798 1.7e-28 131.7 236 42.8
A09p02280 Brassica napus HOM05D003286 ORTHO05D021628 1.4e-27 128.6 431 29.7
Sp6g03000 Schrenkiella parvula HOM05D011698 ORTHO05D013798 5.3e-27 126.7 528 28.2
Thhalv10029305m.g Eutrema salsugineum HOM05D003286 ORTHO05D021628 6.1e-23 113.2 555 26.8
AT4G03370 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 6.3e-20 103.2 162 43.8
BcaC04g21387 Brassica carinata HOM05D003286 ORTHO05D002463 4.1e-19 100.5 133 44.4
C09p32410 Brassica napus HOM05D003286 ORTHO05D002463 4.1e-19 100.5 133 44.4
BolC9t56086H Brassica oleracea HOM05D003286 ORTHO05D002463 4.1e-19 100.5 133 44.4
A09p25500 Brassica napus HOM05D003286 ORTHO05D002463 1.2e-18 99.0 136 45.6
BraA09t38125Z Brassica rapa HOM05D003286 ORTHO05D002463 1.2e-18 99.0 136 45.6
Thecc.10G122300 Theobroma cacao HOM05D003286 ORTHO05D002463 1.2e-18 99.0 95 56.8
Thhalv10029513m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 4.5e-18 97.1 548 26.8
Thecc.06G214200 Theobroma cacao HOM05D003286 ORTHO05D002463 2.9e-17 94.4 109 50.5
BcaB01g01895 Brassica carinata HOM05D003286 ORTHO05D002463 5.0e-17 93.6 138 43.5
Glyma.U031417 Glycine max HOM05D003286 ORTHO05D002463 5.0e-17 93.6 100 51.0
BraA08t33672Z Brassica rapa HOM05D003286 ORTHO05D002463 6.5e-17 93.2 136 44.1
BcaC01g00928 Brassica carinata HOM05D003286 ORTHO05D002463 1.5e-16 92.0 138 42.8
C03p86020 Brassica napus HOM05D003286 ORTHO05D002463 1.5e-16 92.0 138 42.8
BolC3t20894H Brassica oleracea HOM05D003286 ORTHO05D002463 1.5e-16 92.0 138 42.8
Potri.004G022400 Populus trichocarpa HOM05D003286 ORTHO05D002463 1.5e-16 92.0 106 47.2
AT4G05230 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 1.9e-16 91.7 85 58.8
A08p17100 Brassica napus HOM05D003286 ORTHO05D002463 2.5e-16 91.3 153 41.2
AL6G48830 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 5.5e-16 90.1 69 62.3
Sabra04G0012200 Salix brachista HOM05D003286 ORTHO05D002463 5.5e-16 90.1 69 59.4
BraA03t12249Z Brassica rapa HOM05D011698 ORTHO05D013798 7.2e-16 89.7 195 34.9
Duzib160G0656 Durio zibethinus HOM05D003286 ORTHO05D002463 9.4e-16 89.4 109 49.5
Carub.0006s3413 Capsella rubella HOM05D003286 ORTHO05D002463 1.2e-15 89.0 129 45.0
CARHR251340 Cardamine hirsuta HOM05D003286 ORTHO05D116431 1.2e-15 89.0 140 39.3
Thhalv10028963m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 1.2e-15 89.0 69 60.9
Glyma.13G153900 Glycine max HOM05D003286 ORTHO05D002463 1.6e-15 88.6 69 60.9
CARHR252330 Cardamine hirsuta HOM05D003286 ORTHO05D002463 2.1e-15 88.2 69 60.9
TPR.G34503 Trifolium pratense HOM05D003286 ORTHO05D002463 2.1e-15 88.2 89 52.8
AL6G49970 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 2.7e-15 87.8 108 48.1
A03p30700 Brassica napus HOM05D011698 ORTHO05D013798 2.7e-15 87.8 193 33.7
Lj1g0012071 Lotus japonicus HOM05D003286 ORTHO05D002463 2.7e-15 87.8 69 60.9
Lalb_Chr10g0101691 Lupinus albus HOM05D003286 ORTHO05D002463 2.7e-15 87.8 69 58.0
Peaxi162Scf00063g00244 Petunia axillaris HOM05D003286 ORTHO05D002463 2.7e-15 87.8 69 56.5
Duzib235G0679 Durio zibethinus HOM05D003286 ORTHO05D002463 3.6e-15 87.4 69 59.4
Lj2g0008596 Lotus japonicus HOM05D003286 ORTHO05D002463 3.6e-15 87.4 69 59.4
CARHR251320 Cardamine hirsuta HOM05D003286 ORTHO05D002463 4.7e-15 87.0 69 59.4
Cpa.g.sc198.10 Carica papaya HOM05D003286 ORTHO05D002463 4.7e-15 87.0 69 59.4
Gohir.A10G211300 Gossypium hirsutum HOM05D003286 ORTHO05D002463 4.7e-15 87.0 69 58.0
Eucgr.E03707 Eucalyptus grandis HOM05D003286 ORTHO05D002463 6.1e-15 86.7 98 49.0
QL05p075142 Quercus lobata HOM05D003286 ORTHO05D002463 6.1e-15 86.7 69 56.5
QL93p0073_0716 Quercus lobata HOM05D003286 ORTHO05D002463 6.1e-15 86.7 69 56.5
Sp6g02990 Schrenkiella parvula HOM05D003286 ORTHO05D002463 6.1e-15 86.7 69 58.0
Carub.0006s3317 Capsella rubella HOM05D003286 ORTHO05D002463 1.0e-14 85.9 210 32.9
Ca_16278_v3 Cicer arietinum L. HOM05D000120 ORTHO05D002463 1.0e-14 85.9 69 58.0
Gohir.D10G015100 Gossypium hirsutum HOM05D003286 ORTHO05D002463 1.4e-14 85.5 69 56.5
Gorai.011G016700 Gossypium raimondii HOM05D003286 ORTHO05D002463 1.4e-14 85.5 69 56.5
Medtr3g080180 Medicago truncatula HOM05D003286 ORTHO05D002463 1.4e-14 85.5 85 52.9
Ciclev10018056m.g Citrus clementina HOM05D003286 ORTHO05D002463 1.8e-14 85.1 69 56.5
FAN24G2961 Fragaria x ananassa HOM05D003286 ORTHO05D002463 2.3e-14 84.7 90 48.9
Lj1P1225T26 Lonicera japonica HOM05D003286 ORTHO05D002463 2.3e-14 84.7 70 55.7
RcHm_v2.0_Chr5g0003951 Rosa chinensis HOM05D003286 ORTHO05D002463 2.3e-14 84.7 89 50.6
TWI38G0444 Tripterygium wilfordii HOM05D003286 ORTHO05D002463 2.3e-14 84.7 73 56.2
BcaC01g06718 Brassica carinata HOM05D011698 ORTHO05D013798 3.0e-14 84.3 83 54.2
Carub.0006s3412 Capsella rubella HOM05D003286 ORTHO05D002463 3.0e-14 84.3 201 34.3
Cc07_g12950 Coffea canephora HOM05D003286 ORTHO05D002463 3.0e-14 84.3 98 44.9
Thhalv10029386m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 3.0e-14 84.3 94 52.1
Prupe.4G026000 Prunus persica HOM05D003286 ORTHO05D002463 3.0e-14 84.3 89 48.3
PGR042G2119 Punica granatum HOM05D003286 ORTHO05D002463 3.0e-14 84.3 118 43.2
GSVIVG01012631001 Vitis vinifera HOM05D003286 ORTHO05D002463 3.0e-14 84.3 95 47.4
CSS0013854 Camellia sinensis var. sinensis HOM05D003286 ORTHO05D002463 4.0e-14 84.0 85 51.8
Cfa000701 Carpinus fangiana HOM05D003286 ORTHO05D002463 4.0e-14 84.0 69 56.5
Gohir.A10G015100 Gossypium hirsutum HOM05D003286 ORTHO05D002463 4.0e-14 84.0 69 56.5
AUR62015794 Chenopodium quinoa HOM05D003286 ORTHO05D002463 5.2e-14 83.6 100 44.0
COL.COLO4_31727 Corchorus olitorius HOM05D003286 ORTHO05D002463 5.2e-14 83.6 69 56.5
Hma1.2p1_0158F.1_g069790 Hydrangea macrophylla HOM05D003286 ORTHO05D002463 5.2e-14 83.6 85 51.8
Manes.17G035100 Manihot esculenta HOM05D003286 ORTHO05D002463 5.2e-14 83.6 69 56.5
Solyc11g011900.1 Solanum lycopersicum HOM05D003286 ORTHO05D002463 5.2e-14 83.6 94 47.9
C03p37410 Brassica napus HOM05D011698 ORTHO05D013798 6.8e-14 83.2 81 54.3
MELO3C007371.2 Cucumis melo HOM05D003286 ORTHO05D002463 6.8e-14 83.2 97 44.3
FvH4_2g19820 Fragaria vesca HOM05D003286 ORTHO05D002463 6.8e-14 83.2 90 48.9
BolC9t53168H Brassica oleracea HOM05D003286 ORTHO05D002463 8.8e-14 82.8 151 37.7
CARHR251360 Cardamine hirsuta HOM05D003286 ORTHO05D002463 8.8e-14 82.8 165 35.2
CiPaw.09G087100 Carya illinoinensis HOM05D003286 ORTHO05D002463 1.2e-13 82.4 69 56.5
Nn1g08164 Nelumbo nucifera HOM05D003286 ORTHO05D002463 1.2e-13 82.4 69 55.1
C02p39730 Brassica napus HOM05D003286 ORTHO05D002463 1.5e-13 82.0 69 55.1
AUR62020422 Chenopodium quinoa HOM05D003286 ORTHO05D002463 1.5e-13 82.0 69 53.6
BcaB01g02493 Brassica carinata HOM05D011698 ORTHO05D013798 2.0e-13 81.6 164 37.2
CAN.G222.170 Capsicum annuum HOM05D003286 ORTHO05D002463 2.0e-13 81.6 69 56.5
GSVIVG01029957001 Vitis vinifera HOM05D003286 ORTHO05D002463 2.0e-13 81.6 69 53.6
CsaV3_6G049250 Cucumis sativus L. HOM05D003286 ORTHO05D002463 2.6e-13 81.3 106 45.3
Eucgr.F00162 Eucalyptus grandis HOM05D003286 ORTHO05D002463 2.6e-13 81.3 98 48.0
Nn1g03635 Nelumbo nucifera HOM05D003286 ORTHO05D002463 2.6e-13 81.3 69 53.6
Sed0004843 Sechium edule HOM05D003286 ORTHO05D002463 2.6e-13 81.3 89 47.2
A09p02270 Brassica napus HOM05D003286 ORTHO05D002463 3.4e-13 80.9 147 33.3
BraA09t35876Z Brassica rapa HOM05D003286 ORTHO05D002463 3.4e-13 80.9 147 33.3
ClCG01G022170 Citrullus lanatus HOM05D003286 ORTHO05D002463 4.4e-13 80.5 69 53.6
FAN15G1751 Fragaria x ananassa HOM05D003286 ORTHO05D002463 4.4e-13 80.5 87 48.3
Lsat_1_v5_gn_8_111880 Lactuca sativa HOM05D003286 ORTHO05D002463 4.4e-13 80.5 70 58.6
VMungo0251G0596 Vigna mungo HOM05D003286 ORTHO05D002463 4.4e-13 80.5 89 49.4
Aa31sc199G10 Aethionema arabicum HOM05D003286 ORTHO05D002463 5.7e-13 80.1 128 39.1
A03p30710 Brassica napus HOM05D011698 ORTHO05D013798 5.7e-13 80.1 81 54.3
BraA03t12250Z Brassica rapa HOM05D011698 ORTHO05D013798 5.7e-13 80.1 81 54.3
MBI02_g21870_MAGBIO Magnolia biondii HOM05D003286 ORTHO05D002463 5.7e-13 80.1 69 52.2
Phvul.002G250900 Phaseolus vulgaris HOM05D003286 ORTHO05D002463 5.7e-13 80.1 69 55.1
THA.LOC104806256 Tarenaya hassleriana HOM05D003286 ORTHO05D002463 5.7e-13 80.1 146 34.9
Manes.17G035200 Manihot esculenta HOM05D003286 ORTHO05D002463 9.8e-13 79.3 69 53.6
Aqoxy1G02958 Aquilegia oxysepala HOM05D003286 ORTHO05D002463 1.3e-12 79.0 135 40.0
ECA238G0902 Erigeron canadensis HOM05D003286 ORTHO05D002463 1.3e-12 79.0 70 55.7
Rhsim10G0183400 Rhododendron simsii HOM05D003286 ORTHO05D002463 1.3e-12 79.0 71 49.3
BolC3t16033H Brassica oleracea HOM05D011698 ORTHO05D013798 1.7e-12 78.6 200 33.5
HanXRQChr08g0234141 Helianthus annuus HOM05D003286 ORTHO05D002463 1.7e-12 78.6 71 54.9
MD10G1314800 Malus domestica HOM05D003286 ORTHO05D002463 2.2e-12 78.2 70 54.3
CARHR251370 Cardamine hirsuta HOM05D003286 ORTHO05D002463 2.8e-12 77.8 202 32.7
Cfa000276 Carpinus fangiana HOM05D003286 ORTHO05D002463 2.8e-12 77.8 69 52.2
DCAR_030615 Daucus carota HOM05D003286 ORTHO05D002463 2.8e-12 77.8 69 50.7
Psat6g165560 Pisum sativum HOM05D003286 ORTHO05D002463 2.8e-12 77.8 88 48.9
Manes.16G012200 Manihot esculenta HOM05D003286 ORTHO05D002463 3.7e-12 77.4 103 42.7
unitig_748.g8449 Utricularia gibba HOM05D003286 ORTHO05D002463 3.7e-12 77.4 135 37.8
C09p02370 Brassica napus HOM05D003286 ORTHO05D002463 4.9e-12 77.0 151 33.8
Carub.0006s3410 Capsella rubella HOM05D003286 ORTHO05D002463 4.9e-12 77.0 225 30.7
Migut.K01114 Erythranthe guttata HOM05D003286 ORTHO05D002463 4.9e-12 77.0 69 56.5
Eucgr.D00812 Eucalyptus grandis HOM05D003286 ORTHO05D002463 6.3e-12 76.6 86 48.8
BcaC01g06716 Brassica carinata HOM05D011698 ORTHO05D013798 1.1e-11 75.9 194 32.5
C03p37400 Brassica napus HOM05D011698 ORTHO05D013798 1.1e-11 75.9 194 32.5
BolC3t16032H Brassica oleracea HOM05D011698 ORTHO05D013798 1.1e-11 75.9 194 32.5
Sc07g0002820 Simmondsia chinensis HOM05D003286 ORTHO05D002463 1.1e-11 75.9 70 45.7
Psat5g122680 Pisum sativum HOM05D003286 ORTHO05D002463 1.8e-11 75.1 144 38.2
AT4G02950 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 5.4e-11 73.6 113 41.6
CARHR251330 Cardamine hirsuta HOM05D003286 ORTHO05D002463 5.4e-11 73.6 103 43.7
VMungo0720G2787 Vigna mungo HOM05D003286 ORTHO05D002463 7.0e-11 73.2 100 40.0
unitig_32.g10728 Utricularia gibba HOM05D003286 ORTHO05D002463 9.1e-11 72.8 89 43.8
Actinidia01598 Actinidia chinensis HOM05D003286 ORTHO05D002463 2.0e-10 71.6 69 49.3
HPP92_012327 Vanilla planifolia HOM05D003286 ORTHO05D002463 2.0e-10 71.6 66 48.5
HPP92_012386 Vanilla planifolia HOM05D003286 ORTHO05D002463 2.0e-10 71.6 66 48.5
AL6G49960 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 2.7e-10 71.2 146 37.7
CANSAT56G4121 Cannabis sativa HOM05D003286 ORTHO05D002463 2.7e-10 71.2 70 50.0
AT4G03360 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 3.5e-10 70.9 116 40.5
SHI02168 Sapria himalayana HOM05D003286 ORTHO05D002463 3.5e-10 70.9 61 49.2
EL10Ac4g07788 Beta vulgaris HOM05D003286 ORTHO05D002463 4.5e-10 70.5 114 36.8
AT4G03350 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 5.9e-10 70.1 116 39.7
Phvul.007G052300 Phaseolus vulgaris HOM05D003286 ORTHO05D050290 5.9e-10 70.1 102 40.2
Oeu009440.1 Olea europaea HOM05D003286 ORTHO05D002463 1.3e-09 68.9 69 43.5
AT4G05240 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 1.7e-09 68.6 100 44.0
CARHR252310 Cardamine hirsuta HOM05D003286 ORTHO05D002463 2.3e-09 68.2 116 39.7
PSO675G8889 Papaver somniferum HOM05D003286 ORTHO05D002463 2.9e-09 67.8 95 45.3
PGR004G2484 Punica granatum HOM05D003286 ORTHO05D002463 3.8e-09 67.4 84 46.4
Carub.0006s3408 Capsella rubella HOM05D003286 ORTHO05D002463 6.6e-09 66.6 102 35.3
TAR624G0182 Trochodendron aralioides HOM05D003286 ORTHO05D002463 6.6e-09 66.6 89 43.8
TAR624G0858 Trochodendron aralioides HOM05D003286 ORTHO05D002463 8.6e-09 66.2 89 43.8
BolC2t09988H Brassica oleracea HOM05D003286 ORTHO05D002463 1.1e-08 65.9 99 39.4
PSO541G2565 Papaver somniferum HOM05D003286 ORTHO05D002463 1.5e-08 65.5 131 35.9
AL6G48840 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 2.5e-08 64.7 73 47.9
TAR624G0130 Trochodendron aralioides HOM05D003286 ORTHO05D002463 4.2e-08 63.9 69 46.4
TAR624G1349 Trochodendron aralioides HOM05D003286 ORTHO05D002463 7.2e-08 63.2 69 46.4
BcaC03g16191 Brassica carinata HOM05D003286 ORTHO05D002463 9.5e-08 62.8 52 51.9
AL6G48870 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 2.1e-07 61.6 112 41.1
AT4G05310 Arabidopsis thaliana HOM05D003286 ORTHO05D038712 2.8e-07 61.2 149 33.6
CARHR252240 Cardamine hirsuta HOM05D003286 ORTHO05D002463 4.7e-07 60.5 117 34.2
CARHR252290 Cardamine hirsuta HOM05D003286 ORTHO05D002463 4.7e-07 60.5 69 46.4
THA.LOC104801548 Tarenaya hassleriana HOM05D007466 ORTHO05D002463 4.7e-07 60.5 95 32.6
Thhalv10002923m.g Eutrema salsugineum HOM05D007466 ORTHO05D002463 6.1e-07 60.1 95 34.7
AL6G49560 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 1.4e-06 58.9 115 40.0
Carub.0006s3318 Capsella rubella HOM05D003286 ORTHO05D002463 1.4e-06 58.9 123 34.1
CDE04G2878 Ceratophyllum demersum HOM05D003286 ORTHO05D002463 2.3e-06 58.2 100 33.0
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 2.3e-06 58.2 72 38.9
Phvul.007G052400 Phaseolus vulgaris HOM05D003286 ORTHO05D002463 4.0e-06 57.4 79 39.2
AL6G49330 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 5.2e-06 57.0 92 43.5
Thhalv10017634m.g Eutrema salsugineum HOM05D007466 ORTHO05D002463 5.2e-06 57.0 95 33.7
Hund01018 Selenicereus undatus HOM05D003286 ORTHO05D002463 5.2e-06 57.0 230 28.3
AT4G05260 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 6.8e-06 56.6 132 34.8
BcaB02g10474 Brassica carinata HOM05D007466 ORTHO05D002463 6.8e-06 56.6 95 33.7
Aa31LG5G4650 Aethionema arabicum HOM05D000219 ORTHO05D004649 8.9e-06 56.2 94 33.0
BraA05t20253Z Brassica rapa HOM05D007466 ORTHO05D002463 8.9e-06 56.2 95 34.7


User provided reference genes

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