Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 2.4e-249 865.1 443 100.0
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 2.5e-246 855.1 443 99.1
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.0e-182 642.9 448 77.9
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 7.3e-161 571.2 449 70.8
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 6.2e-160 568.2 446 69.3
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.4e-159 567.0 450 70.0
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 1.8e-159 566.6 450 69.1
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 2.6e-158 562.8 445 68.8
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 8.3e-157 557.8 442 68.8
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 6.6e-154 548.1 449 67.0
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 1.5e-150 537.0 492 62.6
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 2.0e-150 536.6 431 68.2
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 3.2e-148 529.3 449 66.6
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 3.2e-148 529.3 458 66.4
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 5.4e-148 528.5 431 67.1
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 3.5e-139 499.2 616 50.0
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 9.9e-134 481.1 443 63.0
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.3e-106 390.2 429 55.7
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.0e-105 387.1 424 54.5
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 3.3e-105 386.3 440 54.1
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 3.1e-103 379.8 445 53.5
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 6.9e-103 378.6 425 53.6
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 2.5e-100 370.2 424 52.6
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 4.7e-99 365.9 424 52.4
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 3.3e-97 359.8 433 51.7
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 4.4e-97 359.4 420 52.6
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 3.1e-95 353.2 401 53.4
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 1.0e-93 348.2 451 49.2
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 4.2e-92 342.8 415 53.3
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 5.5e-92 342.4 436 49.8
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 4.0e-90 336.3 415 50.8
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 4.0e-90 336.3 362 56.6
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 9.7e-89 331.6 425 48.9
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 4.7e-83 312.8 282 62.8
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.4e-82 311.2 427 47.8
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 2.3e-82 310.5 394 49.2
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 4.0e-82 309.7 420 47.4
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 6.3e-80 302.4 418 48.3
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.2e-78 298.1 415 48.0
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 3.6e-67 260.0 454 38.3
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 3.6e-67 260.0 454 38.3
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 6.1e-67 259.2 425 39.8
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 8.0e-67 258.8 430 40.2
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.0e-66 258.5 456 37.9
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 1.0e-66 258.5 431 40.1
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 1.4e-66 258.1 447 38.7
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 3.0e-66 256.9 431 39.9
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 4.0e-66 256.5 450 39.8
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.0e-65 254.2 425 38.8
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 2.6e-65 253.8 445 39.3
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 3.4e-65 253.4 451 37.9
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 1.3e-64 251.5 433 39.5
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 1.7e-64 251.1 452 38.5
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 2.9e-64 250.4 451 37.3
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 2.9e-64 250.4 432 40.5
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 8.3e-64 248.8 412 43.7
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 1.4e-63 248.1 423 39.5
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 1.8e-63 247.7 420 39.3
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 1.8e-63 247.7 454 38.5
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 2.4e-63 247.3 451 39.5
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.4e-63 247.3 459 38.8
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 2.4e-63 247.3 421 40.1
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 3.2e-63 246.9 426 39.9
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 3.2e-63 246.9 426 39.9
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 5.4e-63 246.1 426 38.3
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 5.4e-63 246.1 422 38.6
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 5.4e-63 246.1 451 38.8
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 5.4e-63 246.1 422 38.2
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 7.0e-63 245.7 466 38.4
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 9.2e-63 245.4 448 37.9
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 1.2e-62 245.0 420 39.5
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 2.0e-62 244.2 182 70.3
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 4.6e-62 243.0 133 93.2
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 4.6e-62 243.0 423 39.0
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 5.9e-62 242.7 405 39.0
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 7.8e-62 242.3 405 38.8
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 1.0e-61 241.9 408 38.7
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 2.3e-61 240.7 438 38.1
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 6.6e-61 239.2 419 39.1
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 8.6e-61 238.8 440 38.2
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 1.5e-60 238.0 447 37.4
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 1.5e-60 238.0 417 39.1
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 2.5e-60 237.3 439 39.2
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 3.3e-60 236.9 406 38.7
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 1.6e-59 234.6 421 38.0
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 1.6e-59 234.6 419 38.2
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 2.1e-59 234.2 423 38.8
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 2.8e-59 233.8 428 37.9
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 4.7e-59 233.0 446 37.2
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 6.2e-59 232.6 418 38.3
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 8.0e-59 232.3 436 37.8
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 8.0e-59 232.3 447 36.5
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 2.3e-58 230.7 400 38.2
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 2.3e-58 230.7 438 37.4
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 8.9e-58 228.8 400 37.0
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 1.2e-57 228.4 429 36.6
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 2.0e-57 227.6 379 43.5
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 2.0e-57 227.6 450 36.0
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 5.8e-57 226.1 419 37.2
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 5.8e-57 226.1 444 36.0
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 9.8e-57 225.3 408 37.3
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 9.8e-57 225.3 442 36.4
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 4.9e-56 223.0 400 36.8
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 1.4e-55 221.5 428 38.1
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 7.0e-55 219.2 474 35.7
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 9.2e-55 218.8 449 35.9
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 1.2e-54 218.4 462 35.1
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 2.0e-54 217.6 421 36.8
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 4.6e-54 216.5 267 50.2
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 7.8e-54 215.7 459 35.9
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 5.0e-53 213.0 397 38.5
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 6.6e-53 212.6 456 37.1
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 8.6e-53 212.2 425 35.3
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 1.1e-52 211.8 427 37.5
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 3.3e-52 210.3 156 69.9
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 5.6e-52 209.5 417 35.5
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 1.6e-51 208.0 387 37.2
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 1.6e-51 208.0 427 35.6
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 4.0e-50 203.4 496 33.1
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 5.2e-50 203.0 241 52.3
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 6.8e-50 202.6 456 34.9
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 1.2e-49 201.8 410 36.8
BcaB05g23891 Brassica carinata HOM05D003798 ORTHO05D004652 6.4e-48 196.1 157 66.9
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 6.4e-48 196.1 153 68.0
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 1.1e-47 195.3 407 35.1
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 1.2e-46 191.8 360 37.5
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.5e-44 184.9 305 42.0
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 1.6e-43 181.4 418 35.6
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 3.4e-41 173.7 476 32.6
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 4.4e-41 173.3 321 40.8
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 4.4e-41 173.3 402 34.6
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 2.7e-38 164.1 315 39.7
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 3.5e-38 163.7 164 59.1
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.2e-35 155.2 265 40.4
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.2e-30 138.7 176 45.5
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 3.0e-29 134.0 322 31.4
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 3.9e-29 133.7 132 59.1
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 7.3e-28 129.4 248 35.1
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 3.6e-27 127.1 104 61.5
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 4.8e-27 126.7 229 40.2
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 6.9e-26 122.9 318 31.8
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 9.9e-25 119.0 360 27.8
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 1.7e-24 118.2 442 26.9
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 4.9e-24 116.7 367 32.7
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 2.1e-22 111.3 243 36.2
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 1.1e-20 105.5 147 49.0
BolC3t16050H Brassica oleracea HOM05D003798 ORTHO05D032066 2.5e-20 104.4 179 44.7
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 1.6e-19 101.7 205 41.0
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 1.4e-18 98.6 186 37.1
C03p37590 Brassica napus HOM05D003798 ORTHO05D032066 5.3e-18 96.7 159 42.8
Thhalv10029382m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 8.4e-16 89.4 109 47.7
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 1.2e-14 85.5 134 36.6
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 3.5e-14 84.0 123 38.2
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 2.3e-13 81.3 115 43.5
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 1.9e-12 78.2 157 35.0
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 8.1e-11 72.8 120 39.2
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 7.6e-09 66.2 74 48.6
Cpa.g.sc52.48 Carica papaya HOM05D003798 ORTHO05D004652 7.6e-09 66.2 89 39.3
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 2.9e-08 64.3 58 58.6
Glyma.06G258700 Glycine max HOM05D003798 ORTHO05D004652 6.5e-08 63.2 77 51.9
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 8.4e-08 62.8 96 36.5
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 3.2e-07 60.8 65 50.8
CARHR251120 Cardamine hirsuta HOM05D003798 ORTHO05D004652 4.2e-07 60.5 78 43.6
Aqoxy1G03386 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 5.5e-07 60.1 63 55.6
C06p11990 Brassica napus HOM05D003798 ORTHO05D004652 9.3e-07 59.3 83 44.6


User provided reference genes

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