Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 9.2e-124 447.6 364 100.0
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 3.2e-116 422.5 370 95.1
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 1.2e-115 420.6 364 96.4
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 1.9e-113 413.3 367 94.8
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 1.5e-110 403.7 366 95.1
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 1.9e-108 396.7 364 93.7
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 4.2e-108 395.6 364 91.2
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 7.1e-108 394.8 364 87.6
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 1.2e-107 394.0 387 82.9
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 2.5e-105 386.3 364 68.1
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 4.8e-96 355.5 366 89.3
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 1.1e-92 344.4 364 75.3
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 2.5e-92 343.2 424 70.3
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 4.6e-91 339.0 421 72.4
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 1.0e-85 321.2 424 68.2
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 1.4e-84 317.4 431 68.2
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 2.5e-84 316.6 424 70.0
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 1.5e-81 307.4 413 69.0
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 1.3e-80 304.3 441 61.7
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 8.5e-77 291.6 440 65.7
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 3.6e-75 286.2 431 66.1
C03p93150 Brassica napus HOM05D003848 ORTHO05D004616 9.1e-71 271.6 138 98.6
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 9.1e-71 271.6 361 60.1
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 1.5e-70 270.8 442 61.1
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 7.7e-70 268.5 135 99.3
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 2.2e-69 266.9 441 62.8
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 2.2e-69 266.9 405 64.7
C03p93070 Brassica napus HOM05D003848 ORTHO05D004616 2.9e-69 266.5 134 99.3
BcaC01g01558 Brassica carinata HOM05D003848 ORTHO05D004616 8.5e-69 265.0 134 99.3
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 8.5e-69 265.0 405 62.2
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 1.9e-68 263.8 419 56.1
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 2.5e-68 263.5 408 57.8
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 3.2e-68 263.1 395 63.8
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 3.6e-67 259.6 407 62.4
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 1.4e-66 257.7 423 56.3
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 3.0e-66 256.5 424 61.3
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 5.1e-66 255.8 443 58.9
A09p30470 Brassica napus HOM05D003848 ORTHO05D004616 6.7e-66 255.4 134 95.5
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 2.0e-65 253.8 416 64.7
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 3.3e-65 253.1 424 60.6
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 7.4e-65 251.9 421 64.1
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 9.7e-65 251.5 431 57.5
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 9.7e-65 251.5 431 57.3
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 1.3e-64 251.1 424 56.4
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 1.3e-64 251.1 391 61.4
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 1.7e-64 250.8 126 98.4
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 1.7e-64 250.8 434 59.9
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 2.8e-64 250.0 424 62.0
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 3.7e-64 249.6 441 60.5
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 6.3e-64 248.8 428 62.4
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 8.2e-64 248.4 419 60.6
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 1.1e-63 248.1 420 61.9
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 1.4e-63 247.7 383 65.5
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 1.4e-63 247.7 450 58.0
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 1.4e-63 247.7 453 57.2
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 1.8e-63 247.3 423 55.6
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 1.8e-63 247.3 427 56.2
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 2.4e-63 246.9 420 64.0
BraA04t17534Z Brassica rapa HOM05D003848 ORTHO05D004616 3.1e-63 246.5 131 95.4
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 7.0e-63 245.4 390 65.4
A04p19390 Brassica napus HOM05D003848 ORTHO05D004616 1.5e-62 244.2 126 96.8
BcaC02g08380 Brassica carinata HOM05D003848 ORTHO05D004616 3.5e-62 243.0 169 78.7
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 3.5e-62 243.0 424 60.1
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 4.5e-62 242.7 458 57.2
C04p54970 Brassica napus HOM05D003848 ORTHO05D004616 4.5e-62 242.7 168 79.2
BolC4t27032H Brassica oleracea HOM05D003848 ORTHO05D004616 4.5e-62 242.7 168 79.2
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 4.5e-62 242.7 416 55.8
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 7.7e-62 241.9 456 55.3
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 1.0e-61 241.5 454 50.7
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 1.0e-61 241.5 135 86.7
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 1.7e-61 240.7 410 57.3
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 2.2e-61 240.4 135 88.9
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 2.2e-61 240.4 387 63.0
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 2.2e-61 240.4 135 88.1
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 2.9e-61 240.0 417 60.2
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 5.0e-61 239.2 415 61.4
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 5.0e-61 239.2 135 87.4
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 6.5e-61 238.8 135 88.9
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 6.5e-61 238.8 135 85.9
TPR.G28157 Trifolium pratense HOM05D003848 ORTHO05D004616 6.5e-61 238.8 135 87.4
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 8.5e-61 238.4 137 85.4
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 8.5e-61 238.4 135 85.9
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 1.1e-60 238.0 135 85.9
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 1.1e-60 238.0 135 86.7
Pp3c9_17960 Physcomitrium patens HOM05D003848 ORTHO05D004616 1.5e-60 237.7 132 87.9
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 1.9e-60 237.3 396 62.9
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 1.9e-60 237.3 416 62.3
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.9e-60 237.3 419 61.8
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 2.5e-60 236.9 410 65.4
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 3.2e-60 236.5 416 63.7
FAN22G1557 Fragaria x ananassa HOM05D003848 ORTHO05D004616 3.2e-60 236.5 172 70.9
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 4.2e-60 236.1 170 72.4
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 4.2e-60 236.1 135 86.7
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 4.2e-60 236.1 443 60.7
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 4.2e-60 236.1 455 55.6
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 7.2e-60 235.3 135 84.4
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 7.2e-60 235.3 421 62.2
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 9.4e-60 235.0 439 51.7
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 1.2e-59 234.6 135 85.2
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 1.6e-59 234.2 421 59.6
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 1.6e-59 234.2 135 85.2
CANSAT01G1819 Cannabis sativa HOM05D003848 ORTHO05D004616 2.1e-59 233.8 127 89.0
AUR62003538 Chenopodium quinoa HOM05D003848 ORTHO05D004616 2.1e-59 233.8 135 87.4
AUR62017852 Chenopodium quinoa HOM05D003848 ORTHO05D004616 2.1e-59 233.8 135 87.4
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 2.1e-59 233.8 135 84.4
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 2.1e-59 233.8 135 84.4
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 2.1e-59 233.8 450 60.7
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 2.1e-59 233.8 132 87.1
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 2.7e-59 233.4 135 85.2
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 4.7e-59 232.6 425 61.2
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 6.1e-59 232.3 405 63.5
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 8.0e-59 231.9 449 48.6
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 8.0e-59 231.9 128 88.3
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 8.0e-59 231.9 443 54.4
Mapoly0051s0007 Marchantia polymorpha HOM05D003848 ORTHO05D004616 8.0e-59 231.9 135 83.7
SMO231G0049 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 8.0e-59 231.9 129 88.4
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 1.0e-58 231.5 128 88.3
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 1.0e-58 231.5 136 84.6
Zm00001eb314820 Zea mays HOM05D003848 ORTHO05D004616 1.0e-58 231.5 133 86.5
AagrBONN_evm.TU.Sc2ySwM_344.5133 Anthoceros agrestis HOM05D003848 ORTHO05D004616 2.3e-58 230.3 128 87.5
AagrBONN_evm.TU.Sc2ySwM_362.1784 Anthoceros agrestis HOM05D003848 ORTHO05D004616 2.3e-58 230.3 135 83.7
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 2.3e-58 230.3 410 62.4
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 3.0e-58 229.9 433 56.6
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 3.9e-58 229.6 427 63.5
Hund11854 Selenicereus undatus HOM05D003848 ORTHO05D004616 5.2e-58 229.2 128 87.5
CBR_g4136 Chara braunii HOM05D003848 ORTHO05D004616 6.7e-58 228.8 126 87.3
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 6.7e-58 228.8 420 49.3
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 8.8e-58 228.4 456 48.9
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 7.4e-57 225.3 360 62.8
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 9.7e-57 224.9 430 55.3
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 9.7e-57 224.9 424 56.4
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 9.7e-57 224.9 449 58.6
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 1.3e-56 224.6 410 59.3
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 2.2e-56 223.8 458 53.1
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 4.8e-56 222.6 451 51.2
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 5.3e-55 219.2 456 56.8
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.0e-53 214.9 398 62.1
Duzib177G1090 Durio zibethinus HOM05D003848 ORTHO05D004616 1.1e-52 211.5 135 79.3
TPR.G23082 Trifolium pratense HOM05D003848 ORTHO05D004616 4.2e-52 209.5 133 78.9
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 1.2e-51 208.0 447 41.4
BcaC03g13677 Brassica carinata HOM05D003848 ORTHO05D004616 8.8e-50 201.8 133 81.2
BcaC03g16168 Brassica carinata HOM05D003848 ORTHO05D004616 1.3e-48 198.0 105 94.3
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 4.5e-46 189.5 105 89.5
CDE07G1463 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 6.8e-42 175.6 137 66.4
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 1.5e-41 174.5 391 56.5
BraA09t40884Z Brassica rapa HOM05D003848 ORTHO05D004616 1.3e-40 171.4 86 100.0
MCO02G035 Micromonas commoda HOM05D003848 ORTHO05D004616 1.1e-39 168.3 106 80.2
BraA09t38617Z Brassica rapa HOM05D003848 ORTHO05D004616 9.1e-39 165.2 86 96.5
SalBow4G2167 Salvia bowleyana HOM05D003848 ORTHO05D004616 1.3e-37 161.4 137 63.5
C03p93060 Brassica napus HOM05D003848 ORTHO05D004616 2.9e-37 160.2 90 93.3
Ca_04836_v3 Cicer arietinum L. HOM05D001515 ORTHO05D004616 6.6e-37 159.1 81 93.8
PRCOL_00001828 Prasinoderma coloniale HOM05D003848 ORTHO05D004616 2.5e-36 157.1 107 72.0
Nn4g26302 Nelumbo nucifera HOM05D003848 ORTHO05D004616 4.2e-36 156.4 82 91.5
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 4.2e-36 156.4 93 83.9
C02p39120 Brassica napus HOM05D003848 ORTHO05D004616 9.5e-36 155.2 87 89.7
BolC2t09922H Brassica oleracea HOM05D003848 ORTHO05D004616 2.8e-35 153.7 87 88.5
SGA_v2.0_scaffold138G35328 Striga asiatica HOM05D003848 ORTHO05D004616 8.0e-35 152.1 127 63.8
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 8.9e-34 148.7 393 45.5
Cre01.g032250 Chlamydomonas reinhardtii HOM05D003848 ORTHO05D004616 5.7e-33 146.0 100 68.0
BraA09t40883Z Brassica rapa HOM05D003848 ORTHO05D004616 7.5e-33 145.6 93 83.9
Hma1.2p1_0667F.1_g199770 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 6.3e-32 142.5 93 76.3
BNapus_Darmor_BZH_scaffold_38p02440 Brassica napus HOM05D003848 ORTHO05D004616 6.6e-29 132.5 70 95.7
Haze_27548 Corylus avellana HOM05D003848 ORTHO05D004616 1.5e-28 131.3 112 54.5
BNapus_Darmor_BZH_scaffold_38p02460 Brassica napus HOM05D003848 ORTHO05D004616 4.3e-28 129.8 70 94.3
Os09g0455400 Oryza sativa ssp. japonica HOM05D003848 ORTHO05D004616 3.1e-26 123.6 70 85.7
BolC2t06954H Brassica oleracea HOM05D003848 ORTHO05D004616 5.2e-26 122.9 69 91.3
BcaC01g01557 Brassica carinata HOM05D003848 ORTHO05D004616 2.4e-23 114.0 86 75.6
unitig_0.g1042 Utricularia gibba HOM05D003848 ORTHO05D004616 8.6e-21 105.5 65 80.0
MD07G1100600 Malus domestica HOM05D003848 ORTHO05D004616 5.2e-18 96.3 56 87.5
Actinidia21120 Actinidia chinensis HOM05D003848 ORTHO05D004616 8.9e-18 95.5 130 48.5
Ca_05843_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 8.3e-16 89.0 56 80.4
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 9.2e-15 85.5 325 56.3
BolC3t21614H Brassica oleracea HOM05D003848 ORTHO05D004616 2.1e-14 84.3 70 62.9
Prupe.6G167600 Prunus persica HOM05D003848 ORTHO05D004616 6.6e-13 79.3 55 72.7
vmacro19512 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 8.1e-11 72.4 371 49.6
Lj1A173G45 Lonicera japonica HOM05D003848 ORTHO05D004616 1.1e-10 72.0 72 56.9
BNapus_Darmor_BZH_scaffold_38p02420 Brassica napus HOM05D003848 ORTHO05D004616 3.4e-09 67.0 34 91.2
FAN22G0082 Fragaria x ananassa HOM05D003848 ORTHO05D035678 4.4e-09 66.6 102 49.0


User provided reference genes

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