Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02026 Brassica carinata HOM05D003908 ORTHO05D004488 2.9e-64 248.4 129 100.0
BcaB01g02477 Brassica carinata HOM05D003908 ORTHO05D004488 2.9e-64 248.4 129 100.0
BcaC04g24002 Brassica carinata HOM05D003908 ORTHO05D004488 2.9e-64 248.4 129 100.0
A03p30970 Brassica napus HOM05D003908 ORTHO05D004488 2.9e-64 248.4 129 100.0
A09p02050 Brassica napus HOM05D003908 ORTHO05D004488 2.9e-64 248.4 129 100.0
C09p02140 Brassica napus HOM05D003908 ORTHO05D004488 2.9e-64 248.4 129 100.0
BolC9t53144H Brassica oleracea HOM05D003908 ORTHO05D004488 2.9e-64 248.4 129 100.0
BcaC01g06745 Brassica carinata HOM05D003908 ORTHO05D004488 6.5e-64 247.3 129 99.2
C03p37740 Brassica napus HOM05D003908 ORTHO05D004488 6.5e-64 247.3 129 99.2
BolC3t16064H Brassica oleracea HOM05D003908 ORTHO05D004488 6.5e-64 247.3 129 99.2
Sp6g02530 Schrenkiella parvula HOM05D003908 ORTHO05D004488 1.1e-63 246.5 129 98.4
CARHR250910 Cardamine hirsuta HOM05D003908 ORTHO05D004488 1.9e-63 245.7 129 97.7
Thhalv10029066m.g Eutrema salsugineum HOM05D003908 ORTHO05D004488 2.5e-63 245.4 129 97.7
AT4G02620 Arabidopsis thaliana HOM05D003908 ORTHO05D004488 3.2e-63 245.0 129 96.9
AL6G50430 Arabidopsis lyrata HOM05D003908 ORTHO05D004488 5.5e-63 244.2 129 96.9
Carub.0006s3452 Capsella rubella HOM05D003908 ORTHO05D004488 5.5e-63 244.2 129 96.9
BraA09t35854Z Brassica rapa HOM05D003908 ORTHO05D004488 1.2e-62 243.0 132 97.7
Aa31LG5G2250 Aethionema arabicum HOM05D003908 ORTHO05D004488 3.6e-62 241.5 126 97.6
BraA03t12274Z Brassica rapa HOM05D003908 ORTHO05D004488 3.6e-62 241.5 136 94.9
C02p39240 Brassica napus HOM05D003908 ORTHO05D004488 8.8e-61 236.9 142 90.1
BolC2t09935H Brassica oleracea HOM05D003908 ORTHO05D004488 2.6e-60 235.3 142 89.4
THA.LOC104801254 Tarenaya hassleriana HOM05D003908 ORTHO05D004488 7.4e-60 233.8 126 92.9
THA.LOC104825983 Tarenaya hassleriana HOM05D003908 ORTHO05D004488 7.4e-60 233.8 126 92.9
arahy.Tifrunner.gnm1.ann1.Y10HXA Arachis hypogaea HOM05D003908 ORTHO05D004488 1.1e-58 229.9 126 91.3
arahy.Tifrunner.gnm1.ann1.LT9XWZ Arachis hypogaea HOM05D003908 ORTHO05D004488 1.4e-58 229.6 126 90.5
arahy.Tifrunner.gnm1.ann1.95Q6AF Arachis hypogaea HOM05D003908 ORTHO05D004488 1.8e-58 229.2 126 90.5
Thecc.01G268300 Theobroma cacao HOM05D003908 ORTHO05D004488 5.3e-58 227.6 126 89.7
Duzib106G0327 Durio zibethinus HOM05D003908 ORTHO05D004488 6.9e-58 227.3 126 90.5
Thecc.05G283700 Theobroma cacao HOM05D003908 ORTHO05D004488 6.9e-58 227.3 126 90.5
GSVIVG01031574001 Vitis vinifera HOM05D003908 ORTHO05D004488 9.1e-58 226.9 126 88.9
Gohir.D08G206400 Gossypium hirsutum HOM05D003908 ORTHO05D004488 2.0e-57 225.7 126 88.9
Gorai.004G218600 Gossypium raimondii HOM05D003908 ORTHO05D004488 2.0e-57 225.7 126 88.9
TPR.G34752 Trifolium pratense HOM05D003908 ORTHO05D004488 2.0e-57 225.7 126 88.1
Zm00001eb330190 Zea mays HOM05D003908 ORTHO05D004488 2.0e-57 225.7 126 87.3
Duzib138G1305 Durio zibethinus HOM05D003908 ORTHO05D004488 2.6e-57 225.3 126 88.1
Lalb_Chr12g0209211 Lupinus albus HOM05D003908 ORTHO05D004488 2.6e-57 225.3 126 88.1
Lj4g0023890 Lotus japonicus HOM05D003908 ORTHO05D004488 3.4e-57 224.9 126 88.1
Actinidia19977 Actinidia chinensis HOM05D003908 ORTHO05D004488 4.5e-57 224.6 126 88.1
Actinidia27523 Actinidia chinensis HOM05D003908 ORTHO05D004488 4.5e-57 224.6 126 88.1
Glyma.05G135300 Glycine max HOM05D003908 ORTHO05D004488 4.5e-57 224.6 126 88.1
Glyma.08G090500 Glycine max HOM05D003908 ORTHO05D004488 4.5e-57 224.6 126 88.1
CSS0036720 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 5.9e-57 224.2 126 87.3
CSS0040700 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 5.9e-57 224.2 126 87.3
Gohir.A08G215400 Gossypium hirsutum HOM05D003908 ORTHO05D004488 5.9e-57 224.2 126 88.9
Gorai.004G246600 Gossypium raimondii HOM05D003908 ORTHO05D004488 5.9e-57 224.2 126 88.9
Hma1.2p1_0760F.1_g214230 Hydrangea macrophylla HOM05D003908 ORTHO05D004488 5.9e-57 224.2 126 87.3
TWI12G1100 Tripterygium wilfordii HOM05D003908 ORTHO05D004488 5.9e-57 224.2 126 85.7
Zm00001eb111070 Zea mays HOM05D003908 ORTHO05D004488 5.9e-57 224.2 126 86.5
CiPaw.08G123800 Carya illinoinensis HOM05D003908 ORTHO05D004488 7.7e-57 223.8 126 88.1
Ca_18213_v3 Cicer arietinum L. HOM05D003908 ORTHO05D004488 7.7e-57 223.8 126 88.1
FAN05G0658 Fragaria x ananassa HOM05D003908 ORTHO05D004488 7.7e-57 223.8 126 88.1
Gohir.A08G188000 Gossypium hirsutum HOM05D003908 ORTHO05D004488 7.7e-57 223.8 126 88.1
Phvul.002G186900 Phaseolus vulgaris HOM05D003908 ORTHO05D004488 7.7e-57 223.8 126 88.1
ECA240G0363 Erigeron canadensis HOM05D003908 ORTHO05D004488 1.0e-56 223.4 126 87.3
VMungo0251G3698 Vigna mungo HOM05D003908 ORTHO05D004488 1.0e-56 223.4 126 87.3
MELO3C015218.2 Cucumis melo HOM05D003908 ORTHO05D004488 1.3e-56 223.0 126 86.5
CsaV3_1G042520 Cucumis sativus L. HOM05D003908 ORTHO05D004488 1.3e-56 223.0 126 86.5
CSS0027656 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.7e-56 222.6 126 86.5
Dinv34562 Davidia involucrata HOM05D003908 ORTHO05D004488 1.7e-56 222.6 126 87.3
FvH4_6g02960 Fragaria vesca HOM05D003908 ORTHO05D004488 2.2e-56 222.2 126 87.3
FAN09G2689 Fragaria x ananassa HOM05D003908 ORTHO05D004488 2.2e-56 222.2 126 87.3
Psat7g086640 Pisum sativum HOM05D003908 ORTHO05D004488 2.2e-56 222.2 126 87.3
TAR633G1149 Trochodendron aralioides HOM05D003908 ORTHO05D004488 2.2e-56 222.2 126 87.3
Os02g0824700 Oryza sativa ssp. japonica HOM05D003908 ORTHO05D004488 2.9e-56 221.9 126 86.5
Os04g0137500 Oryza sativa ssp. japonica HOM05D003908 ORTHO05D004488 2.9e-56 221.9 126 86.5
Prupe.5G006500 Prunus persica HOM05D003908 ORTHO05D004488 2.9e-56 221.9 126 86.5
Sed0024016 Sechium edule HOM05D003908 ORTHO05D004488 2.9e-56 221.9 126 85.7
PGSC0003DMG400009421 Solanum tuberosum HOM05D003908 ORTHO05D004488 2.9e-56 221.9 126 86.5
ClCG03G017370 Citrullus lanatus HOM05D003908 ORTHO05D004488 3.8e-56 221.5 126 85.7
RcHm_v2.0_Chr3g0451151 Rosa chinensis HOM05D003908 ORTHO05D004488 3.8e-56 221.5 126 87.3
Sed0027410 Sechium edule HOM05D003908 ORTHO05D004488 3.8e-56 221.5 126 85.7
CANSAT21G0496 Cannabis sativa HOM05D003908 ORTHO05D004488 5.0e-56 221.1 126 84.9
Prupe.6G005500 Prunus persica HOM05D003908 ORTHO05D004488 5.0e-56 221.1 126 86.5
Actinidia24932 Actinidia chinensis HOM05D005044 ORTHO05D006799 6.5e-56 220.7 123 87.8
Cfa006421 Carpinus fangiana HOM05D003908 ORTHO05D004488 6.5e-56 220.7 126 86.5
Ciclev10002833m.g Citrus clementina HOM05D003908 ORTHO05D004488 6.5e-56 220.7 126 86.5
Eucgr.B02621 Eucalyptus grandis HOM05D003908 ORTHO05D004488 6.5e-56 220.7 126 87.3
Eucgr.C04384 Eucalyptus grandis HOM05D003908 ORTHO05D004488 6.5e-56 220.7 126 87.3
Hma1.2p1_0172F.1_g076150 Hydrangea macrophylla HOM05D003908 ORTHO05D004488 6.5e-56 220.7 126 86.5
Lsat_1_v5_gn_6_91060 Lactuca sativa HOM05D003908 ORTHO05D004488 6.5e-56 220.7 126 84.1
Nitab4.5_0000360g0160 Nicotiana tabacum HOM05D003908 ORTHO05D004488 6.5e-56 220.7 126 86.5
Nitab4.5_0002776g0060 Nicotiana tabacum HOM05D003908 ORTHO05D004488 6.5e-56 220.7 126 86.5
Ah.02g111400 Amaranthus hybridus HOM05D003908 ORTHO05D004488 8.5e-56 220.3 126 84.9
FAN14G5491 Fragaria x ananassa HOM05D003908 ORTHO05D004488 8.5e-56 220.3 126 86.5
Solyc02g068450.3 Solanum lycopersicum HOM05D003908 ORTHO05D004488 8.5e-56 220.3 126 85.7
Sopen02g017590 Solanum pennellii HOM05D003908 ORTHO05D004488 8.5e-56 220.3 126 85.7
Nitab4.5_0000443g0180 Nicotiana tabacum HOM05D003908 ORTHO05D004488 1.1e-55 219.9 126 84.9
Rhsim01G0201300 Rhododendron simsii HOM05D003908 ORTHO05D004488 1.1e-55 219.9 126 84.1
Sabra05G0166800 Salix brachista HOM05D003908 ORTHO05D004488 1.1e-55 219.9 126 87.3
Gohir.D08G232100 Gossypium hirsutum HOM05D003908 ORTHO05D004488 1.4e-55 219.5 126 88.1
Rhsim01G0270200 Rhododendron simsii HOM05D003908 ORTHO05D004488 1.4e-55 219.5 126 84.1
Cpa.g.sc117.89 Carica papaya HOM05D003908 ORTHO05D004488 1.9e-55 219.2 126 85.7
COL.COLO4_15346 Corchorus olitorius HOM05D003908 ORTHO05D004488 1.9e-55 219.2 126 87.3
Peaxi162Scf00199g00925 Petunia axillaris HOM05D003908 ORTHO05D004488 1.9e-55 219.2 126 85.7
CAN.G1299.5 Capsicum annuum HOM05D003908 ORTHO05D004488 2.5e-55 218.8 126 84.1
unitig_22.g5278 Utricularia gibba HOM05D003908 ORTHO05D004488 2.5e-55 218.8 126 84.9
HPP92_001854 Vanilla planifolia HOM05D003908 ORTHO05D004488 2.5e-55 218.8 126 85.7
Atru.chr2.813 Acer truncatum HOM05D003908 ORTHO05D004488 3.2e-55 218.4 126 84.1
Aqoxy5G00367 Aquilegia oxysepala HOM05D003908 ORTHO05D004488 3.2e-55 218.4 126 84.1
Aqoxy6G02470 Aquilegia oxysepala HOM05D003908 ORTHO05D004488 3.2e-55 218.4 126 83.3
MBI07_g21062_MAGBIO Magnolia biondii HOM05D003908 ORTHO05D004488 3.2e-55 218.4 126 84.9
Atru.chr4.2009 Acer truncatum HOM05D003908 ORTHO05D004488 4.2e-55 218.0 126 84.1
MBI10_g16831_MAGBIO Magnolia biondii HOM05D003908 ORTHO05D004488 4.2e-55 218.0 126 84.1
QL03p025800 Quercus lobata HOM05D003908 ORTHO05D004488 4.2e-55 218.0 126 84.1
Potri.005G217600 Populus trichocarpa HOM05D003908 ORTHO05D004488 5.5e-55 217.6 126 86.5
Hund02874 Selenicereus undatus HOM05D003908 ORTHO05D004488 7.2e-55 217.2 126 82.5
HPP92_018775 Vanilla planifolia HOM05D003908 ORTHO05D004488 7.2e-55 217.2 126 84.1
Gohir.A13G052900 Gossypium hirsutum HOM05D003908 ORTHO05D004488 9.4e-55 216.9 126 84.9
PGR031G1854 Punica granatum HOM05D003908 ORTHO05D004488 9.4e-55 216.9 126 86.5
EL10Ac5g10467 Beta vulgaris HOM05D003908 ORTHO05D004488 1.6e-54 216.1 126 83.3
Lj1g0011223 Lotus japonicus HOM05D003908 ORTHO05D004488 1.6e-54 216.1 126 86.5
Manes.07G050600 Manihot esculenta HOM05D003908 ORTHO05D004488 1.6e-54 216.1 126 84.1
Gorai.013G079800 Gossypium raimondii HOM05D003908 ORTHO05D004488 2.1e-54 215.7 126 84.9
Migut.D00367 Erythranthe guttata HOM05D003908 ORTHO05D004488 2.7e-54 215.3 126 83.3
CSS0040042 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 3.6e-54 214.9 126 82.5
Cc09_g07930 Coffea canephora HOM05D003908 ORTHO05D004488 3.6e-54 214.9 126 81.0
SalBow3G3620 Salvia bowleyana HOM05D003908 ORTHO05D004488 3.6e-54 214.9 126 82.5
Nn3g19495 Nelumbo nucifera HOM05D003908 ORTHO05D004488 4.7e-54 214.5 126 84.9
ATR0787G044 Amborella trichopoda HOM05D003908 ORTHO05D004488 6.1e-54 214.2 126 82.5
MSTRG.21514 Avicennia marina HOM05D003908 ORTHO05D004488 6.1e-54 214.2 126 82.5
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 6.1e-54 214.2 126 82.5
TWI18G0751 Tripterygium wilfordii HOM05D003908 ORTHO05D004488 6.1e-54 214.2 126 81.7
CDE09G0316 Ceratophyllum demersum HOM05D003908 ORTHO05D004488 1.4e-53 213.0 126 84.1
Gohir.D13G069500 Gossypium hirsutum HOM05D003908 ORTHO05D004488 1.4e-53 213.0 126 83.3
Sc17g0001030 Simmondsia chinensis HOM05D003908 ORTHO05D004488 1.4e-53 213.0 126 81.7
SGA_v2.0_scaffold138G35289 Striga asiatica HOM05D003696 ORTHO05D005158 1.8e-53 212.6 126 81.7
Oeu018177.1 Olea europaea HOM05D003908 ORTHO05D004488 5.2e-53 211.1 126 81.7
PSO210G0243 Papaver somniferum HOM05D003908 ORTHO05D004488 1.1e-52 209.9 126 84.1
PSO832G4196 Papaver somniferum HOM05D003908 ORTHO05D004488 1.1e-52 209.9 126 84.1
CSS0045088 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.3e-51 206.5 126 82.5
HanXRQChr03g0088561 Helianthus annuus HOM05D003908 ORTHO05D004488 1.7e-51 206.1 110 90.9
PSO135G0069 Papaver somniferum HOM05D003908 ORTHO05D004488 1.7e-51 206.1 126 81.7
MD04G1224300 Malus domestica HOM05D003908 ORTHO05D004488 6.3e-51 204.1 110 90.0
PSO384G1262 Papaver somniferum HOM05D003908 ORTHO05D004488 8.2e-51 203.8 126 81.0
MD12G1241000 Malus domestica HOM05D003908 ORTHO05D004488 1.4e-50 203.0 110 90.0
Dinv04731 Davidia involucrata HOM05D003908 ORTHO05D004488 7.0e-50 200.7 110 87.3
Duzib133G0635 Durio zibethinus HOM05D003908 ORTHO05D004488 1.6e-49 199.5 110 89.1
arahy.Tifrunner.gnm1.ann1.XQ21SD Arachis hypogaea HOM05D003908 ORTHO05D004488 2.6e-49 198.7 105 92.4
vmacro14877 Vaccinium macrocarpon HOM05D003908 ORTHO05D004488 7.7e-49 197.2 155 67.7
Mapoly0079s0004 Marchantia polymorpha HOM05D003908 ORTHO05D004488 5.0e-48 194.5 124 72.6
Nitab4.5_0002305g0050 Nicotiana tabacum HOM05D003908 ORTHO05D004488 8.5e-48 193.7 106 86.8
Pp3c25_8080 Physcomitrium patens HOM05D003908 ORTHO05D004488 1.1e-47 193.4 119 74.8
Pp3c6_17470 Physcomitrium patens HOM05D003908 ORTHO05D004488 1.5e-47 193.0 124 73.4
Ciclev10022651m.g Citrus clementina HOM05D003908 ORTHO05D004488 5.5e-47 191.0 151 68.9
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 1.6e-46 189.5 111 80.2
BcaC03g16154 Brassica carinata HOM05D003908 ORTHO05D004488 3.6e-46 188.3 101 95.0
CSS0044738 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 3.6e-46 188.3 117 80.3
Peaxi162Scf00198g01017 Petunia axillaris HOM05D003908 ORTHO05D004488 5.2e-45 184.5 117 77.8
SMO367G0680 Selaginella moellendorffii HOM05D003908 ORTHO05D004488 1.2e-44 183.3 122 69.7
Haze_21722 Corylus avellana HOM05D003908 ORTHO05D004488 1.5e-44 183.0 126 76.2
CDE11G1041 Ceratophyllum demersum HOM05D005443 ORTHO05D004488 3.3e-44 181.8 100 87.0
CBR_g38932 Chara braunii HOM05D003908 ORTHO05D004488 5.7e-44 181.0 125 70.4
CSS0024256 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 7.5e-44 180.6 105 80.0
CSS0029390 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 7.5e-44 180.6 105 80.0
CSS0046821 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 7.5e-44 180.6 102 81.4
CSS0043230 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 5.9e-41 171.0 102 77.5
Actinidia04661 Actinidia chinensis HOM05D003908 ORTHO05D004488 7.2e-39 164.1 110 77.3
Actinidia21151 Actinidia chinensis HOM05D003908 ORTHO05D004488 7.2e-39 164.1 110 77.3
COL.COLO4_30210 Corchorus olitorius HOM05D003908 ORTHO05D004488 2.3e-37 159.1 126 70.6
CSS0038153 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.2e-36 156.8 112 67.0
PRCOL_00000544 Prasinoderma coloniale HOM05D003908 ORTHO05D004488 1.2e-36 156.8 108 65.7
Cre10.g446550 Chlamydomonas reinhardtii HOM05D003908 ORTHO05D004488 1.5e-36 156.4 115 62.6
MCO03G460 Micromonas commoda HOM05D003908 ORTHO05D004488 1.5e-36 156.4 114 63.2
Hund09564 Selenicereus undatus HOM05D003908 ORTHO05D004488 4.4e-36 154.8 126 65.1
Haze_04363 Corylus avellana HOM05D003908 ORTHO05D004488 2.0e-33 146.0 84 84.5
Ah.11g050040 Amaranthus hybridus HOM05D005044 ORTHO05D006799 3.5e-33 145.2 79 86.1
TAR362G1230 Trochodendron aralioides HOM05D003908 ORTHO05D004488 1.0e-32 143.7 98 71.4
COL.COLO4_06708 Corchorus olitorius HOM05D003908 ORTHO05D004488 2.3e-32 142.5 79 86.1
CiPaw.04G181400 Carya illinoinensis HOM05D003908 ORTHO05D004488 1.2e-30 136.7 77 83.1
BcaB05g23651 Brassica carinata HOM05D003908 ORTHO05D004488 3.6e-30 135.2 156 55.8
Lalb_Chr20g0122801 Lupinus albus HOM05D003908 ORTHO05D004488 2.0e-28 129.4 80 78.8
AagrBONN_evm.TU.Sc2ySwM_368.148 Anthoceros agrestis HOM05D003908 ORTHO05D004488 9.2e-26 120.6 77 71.4
SEGI_40634 Sequoiadendron giganteum HOM05D003908 ORTHO05D004488 9.2e-26 120.6 76 75.0
Haze_26154 Corylus avellana HOM05D003908 ORTHO05D004488 1.2e-25 120.2 117 47.9
Nitab4.5_0000138g0160 Nicotiana tabacum HOM05D003908 ORTHO05D004488 6.6e-24 114.4 63 85.7
Actinidia30711 Actinidia chinensis HOM05D005044 ORTHO05D006799 1.4e-21 106.7 69 76.8
Nitab4.5_0008708g0010 Nicotiana tabacum HOM05D003908 ORTHO05D004488 2.0e-20 102.8 57 84.2
Lalb_Chr20g0122811 Lupinus albus HOM05D003908 ORTHO05D004488 4.9e-19 98.2 50 92.0
DCAR_012514 Daucus carota HOM05D003908 ORTHO05D004488 3.2e-18 95.5 47 93.6
DCAR_018445 Daucus carota HOM05D003908 ORTHO05D004488 3.2e-18 95.5 47 93.6
SHI24544 Sapria himalayana HOM05D003908 ORTHO05D000023 9.2e-18 94.0 67 65.7
Sopen12g012850 Solanum pennellii HOM05D003908 ORTHO05D004488 1.4e-13 80.1 58 70.7
AUR62011951 Chenopodium quinoa HOM05D003908 ORTHO05D004488 2.6e-12 75.9 48 75.0
Peaxi162Scf01294g00317 Petunia axillaris HOM05D003908 ORTHO05D004488 6.4e-11 71.2 35 91.4
CSS0012932 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.4e-10 70.1 35 85.7


User provided reference genes

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