Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p01900 Brassica napus HOM05D005645 ORTHO05D007156 1.2e-193 679.9 411 100.0
BraA09t35841Z Brassica rapa HOM05D005645 ORTHO05D007156 2.9e-190 668.7 411 92.2
BcaB01g02041 Brassica carinata HOM05D005645 ORTHO05D007156 6.5e-166 587.8 412 77.4
BcaNung04054 Brassica carinata HOM05D005645 ORTHO05D007156 3.2e-165 585.5 411 84.2
BolC9t53130H Brassica oleracea HOM05D005645 ORTHO05D007156 4.6e-164 581.6 411 85.2
C09p01980 Brassica napus HOM05D005645 ORTHO05D007156 4.3e-162 575.1 411 81.3
Sp6g02350 Schrenkiella parvula HOM05D005645 ORTHO05D007156 6.3e-145 518.1 422 65.4
AT4G02440 Arabidopsis thaliana HOM05D005645 ORTHO05D007156 4.2e-141 505.4 423 64.1
AL6G50630 Arabidopsis lyrata HOM05D005645 ORTHO05D007156 3.6e-140 502.3 415 65.3
Carub.0006s3469 Capsella rubella HOM05D005645 ORTHO05D007156 2.0e-138 496.5 409 63.3
CARHR250710 Cardamine hirsuta HOM05D005645 ORTHO05D007156 2.6e-127 459.5 423 61.2
Aa31LG5G2090 Aethionema arabicum HOM05D005645 ORTHO05D007156 1.1e-120 437.6 422 58.5
THA.LOC109115977 Tarenaya hassleriana HOM05D005645 ORTHO05D007156 1.2e-116 424.1 421 55.6
BcaNung05002 Brassica carinata HOM05D005645 ORTHO05D007156 1.7e-110 403.7 351 63.5
Cc01_g20770 Coffea canephora HOM05D005645 ORTHO05D007156 2.0e-106 390.2 415 51.1
Gohir.D08G085100 Gossypium hirsutum HOM05D005645 ORTHO05D007156 2.0e-103 380.2 405 51.6
Gorai.004G089600 Gossypium raimondii HOM05D005645 ORTHO05D007156 2.0e-103 380.2 405 51.6
MBI19_g25350_MAGBIO Magnolia biondii HOM05D005645 ORTHO05D007156 7.8e-103 378.3 423 49.6
Dinv19699 Davidia involucrata HOM05D005645 ORTHO05D007156 1.7e-102 377.1 412 49.8
Thecc.01G299500 Theobroma cacao HOM05D005645 ORTHO05D007156 1.7e-102 377.1 405 51.1
Gohir.A08G075600 Gossypium hirsutum HOM05D005645 ORTHO05D007156 5.0e-102 375.6 405 51.4
Rhsim01G0284600 Rhododendron simsii HOM05D005645 ORTHO05D007156 8.6e-102 374.8 424 50.5
CSS0005125 Camellia sinensis var. sinensis HOM05D005645 ORTHO05D007156 1.1e-101 374.4 412 50.2
COL.COLO4_23354 Corchorus olitorius HOM05D005645 ORTHO05D007156 1.9e-101 373.6 405 49.4
Nitab4.5_0001879g0020 Nicotiana tabacum HOM05D005645 ORTHO05D007156 2.5e-101 373.2 413 49.6
Atru.chr5.1154 Acer truncatum HOM05D005645 ORTHO05D007156 5.6e-101 372.1 408 49.5
Ciclev10021114m.g Citrus clementina HOM05D005645 ORTHO05D007156 1.6e-100 370.5 422 49.8
Eucgr.H01116 Eucalyptus grandis HOM05D005645 ORTHO05D007156 2.8e-100 369.8 421 48.5
Duzib138G1290 Durio zibethinus HOM05D005645 ORTHO05D007156 1.4e-99 367.5 405 50.6
Manes.05G062500 Manihot esculenta HOM05D005645 ORTHO05D007156 1.8e-99 367.1 409 49.6
ClCG10G010870 Citrullus lanatus HOM05D005645 ORTHO05D007156 2.3e-99 366.7 414 49.5
Nn4g25798 Nelumbo nucifera HOM05D005645 ORTHO05D007156 3.1e-99 366.3 415 47.7
Cpa.g.c27813 Carica papaya HOM05D005645 ORTHO05D007156 4.0e-99 365.9 405 48.6
RcHm_v2.0_Chr6g0293871 Rosa chinensis HOM05D005645 ORTHO05D007156 5.2e-99 365.5 406 49.3
Migut.D00211 Erythranthe guttata HOM05D005645 ORTHO05D007156 1.2e-98 364.4 418 48.1
Hma1.2p1_0491F.1_g164480 Hydrangea macrophylla HOM05D005645 ORTHO05D007156 1.2e-98 364.4 413 51.3
CiPaw.08G095700 Carya illinoinensis HOM05D005645 ORTHO05D007156 3.4e-98 362.8 411 48.9
CsaV3_4G000750 Cucumis sativus L. HOM05D005645 ORTHO05D007156 4.4e-98 362.5 408 51.5
Lsat_1_v5_gn_8_53521 Lactuca sativa HOM05D005645 ORTHO05D007156 4.4e-98 362.5 412 48.5
TWI23G0499 Tripterygium wilfordii HOM05D005645 ORTHO05D007156 1.3e-97 360.9 415 50.1
Sopen09g029900 Solanum pennellii HOM05D005645 ORTHO05D007156 2.9e-97 359.8 411 48.4
CANSAT25G0541 Cannabis sativa HOM05D005645 ORTHO05D007156 3.7e-97 359.4 409 48.7
Duzib133G0671 Durio zibethinus HOM05D005645 ORTHO05D007156 4.9e-97 359.0 405 49.1
Peaxi162Scf00001g00452 Petunia axillaris HOM05D005645 ORTHO05D007156 4.9e-97 359.0 408 48.0
PGR119G1100 Punica granatum HOM05D005645 ORTHO05D007156 4.9e-97 359.0 414 49.3
CAN.G1628.1 Capsicum annuum HOM05D005645 ORTHO05D007156 8.3e-97 358.2 407 47.4
Lj2P1193T28 Lonicera japonica HOM05D005645 ORTHO05D007156 1.1e-96 357.8 413 49.2
Aqoxy2G02954 Aquilegia oxysepala HOM05D005645 ORTHO05D007156 1.9e-96 357.1 414 46.4
Gorai.008G145600 Gossypium raimondii HOM05D005645 ORTHO05D007156 2.4e-96 356.7 412 48.8
MD03G1287400 Malus domestica HOM05D005645 ORTHO05D007156 2.4e-96 356.7 426 47.4
PGSC0003DMG400011401 Solanum tuberosum HOM05D005645 ORTHO05D007156 2.4e-96 356.7 410 48.0
TAR365G0052 Trochodendron aralioides HOM05D005645 ORTHO05D007156 2.4e-96 356.7 408 48.0
Solyc09g075080.3 Solanum lycopersicum HOM05D005645 ORTHO05D007156 4.1e-96 355.9 411 47.7
Sed0014780 Sechium edule HOM05D005645 ORTHO05D007156 5.4e-96 355.5 417 48.9
CiPaw.07G108000 Carya illinoinensis HOM05D005645 ORTHO05D007156 7.0e-96 355.1 407 48.4
Lsat_1_v5_gn_5_191140 Lactuca sativa HOM05D005645 ORTHO05D007156 9.2e-96 354.8 415 47.5
Potri.002G205150 Populus trichocarpa HOM05D005645 ORTHO05D007156 9.2e-96 354.8 424 46.9
HanXRQChr04g0118021 Helianthus annuus HOM05D005645 ORTHO05D007156 1.6e-95 354.0 412 48.1
SalBow3G0280 Salvia bowleyana HOM05D005645 ORTHO05D007156 2.0e-95 353.6 405 48.4
Cfa005921 Carpinus fangiana HOM05D005645 ORTHO05D007156 3.5e-95 352.8 414 47.6
Duzib211G0390 Durio zibethinus HOM05D005645 ORTHO05D007156 3.5e-95 352.8 405 48.4
Prupe.8G260500 Prunus persica HOM05D005645 ORTHO05D007156 4.6e-95 352.4 412 48.5
Gohir.A12G130800 Gossypium hirsutum HOM05D005645 ORTHO05D007156 1.3e-94 350.9 411 47.0
SGA_v2.0_scaffold1G00372 Striga asiatica HOM05D005645 ORTHO05D007156 1.7e-94 350.5 409 49.1
Sabra14G0096600 Salix brachista HOM05D005645 ORTHO05D007156 3.9e-94 349.4 419 47.3
TAR370G0004 Trochodendron aralioides HOM05D005645 ORTHO05D007156 1.1e-93 347.8 408 46.8
QL12p028562 Quercus lobata HOM05D005645 ORTHO05D007156 1.5e-93 347.4 409 47.9
Sabra02G0154200 Salix brachista HOM05D005645 ORTHO05D007156 3.3e-93 346.3 427 46.8
EL10Ac7g17501 Beta vulgaris HOM05D005645 ORTHO05D007156 4.3e-93 345.9 415 48.0
MD11G1310800 Malus domestica HOM05D005645 ORTHO05D007156 4.3e-93 345.9 414 53.6
Potri.014G130000 Populus trichocarpa HOM05D005645 ORTHO05D007156 1.2e-92 344.4 422 46.7
Sed0022873 Sechium edule HOM05D005645 ORTHO05D007156 2.8e-92 343.2 408 47.5
Dinv33051 Davidia involucrata HOM05D005645 ORTHO05D007156 3.6e-92 342.8 405 48.4
SGA_v2.0_scaffold2G01399 Striga asiatica HOM05D005645 ORTHO05D007156 8.1e-92 341.7 417 48.0
HPP92_025206 Vanilla planifolia HOM05D005645 ORTHO05D007156 3.1e-91 339.7 410 45.4
DCAR_002826 Daucus carota HOM05D005645 ORTHO05D007156 5.2e-91 339.0 423 45.9
Sc09g0004020 Simmondsia chinensis HOM05D005645 ORTHO05D007156 4.4e-90 335.9 413 45.5
Actinidia21051 Actinidia chinensis HOM05D005645 ORTHO05D007156 9.8e-90 334.7 388 49.5
AUR62008638 Chenopodium quinoa HOM05D005645 ORTHO05D007156 4.9e-89 332.4 417 45.1
FvH4_2g25611 Fragaria vesca HOM05D005645 ORTHO05D007156 6.4e-89 332.0 405 45.7
FAN27G1772 Fragaria x ananassa HOM05D005645 ORTHO05D007156 1.1e-88 331.3 405 50.6
PSO210G7211 Papaver somniferum HOM05D005645 ORTHO05D007156 1.1e-88 331.3 410 46.6
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 4.1e-88 329.3 401 50.6
AUR62033135 Chenopodium quinoa HOM05D005645 ORTHO05D007156 1.2e-87 327.8 424 43.6
PSO170G2082 Papaver somniferum HOM05D005645 ORTHO05D007156 2.1e-87 327.0 410 46.1
ECA236G0211 Erigeron canadensis HOM05D005645 ORTHO05D007156 7.8e-87 325.1 416 43.8
arahy.Tifrunner.gnm1.ann1.LF73V2 Arachis hypogaea HOM05D005645 ORTHO05D007156 1.0e-86 324.7 413 45.0
Migut.N01502 Erythranthe guttata HOM05D005645 ORTHO05D007156 2.3e-86 323.6 415 45.3
Nitab4.5_0008207g0010 Nicotiana tabacum HOM05D005645 ORTHO05D007156 1.9e-85 320.5 372 47.8
ATR0796G303 Amborella trichopoda HOM05D005645 ORTHO05D007156 2.5e-85 320.1 436 53.2
Glyma.03G214300 Glycine max HOM05D005645 ORTHO05D007156 1.5e-82 310.8 408 49.5
VMungo1383G2661 Vigna mungo HOM05D005645 ORTHO05D007156 3.4e-82 309.7 409 43.8
Lj1g0011611 Lotus japonicus HOM05D005645 ORTHO05D007156 1.2e-79 301.2 411 42.1
Phvul.001G207000 Phaseolus vulgaris HOM05D005645 ORTHO05D007156 1.6e-79 300.8 409 47.4
CSS0029794 Camellia sinensis var. sinensis HOM05D005645 ORTHO05D007156 4.3e-77 292.7 393 45.0
GSVIVG01028000001 Vitis vinifera HOM05D005645 ORTHO05D007156 1.6e-76 290.8 411 40.9
Oeu011455.1 Olea europaea HOM05D005645 ORTHO05D007156 1.1e-75 288.1 405 40.5
DCAR_018339 Daucus carota HOM05D005645 ORTHO05D007156 5.2e-75 285.8 413 41.9
Nn3g21470 Nelumbo nucifera HOM05D005645 ORTHO05D007156 2.0e-74 283.9 381 43.6
CDE11G0431 Ceratophyllum demersum HOM05D005645 ORTHO05D007156 1.3e-73 281.2 361 44.0
FAN15G1997 Fragaria x ananassa HOM05D005645 ORTHO05D007156 1.1e-72 278.1 375 43.5
Lalb_Chr18g0047021 Lupinus albus HOM05D005645 ORTHO05D007156 1.4e-72 277.7 415 43.1
Ca_09155_v3 Cicer arietinum L. HOM05D005645 ORTHO05D007156 5.4e-72 275.8 404 41.1
TPR.G9640 Trifolium pratense HOM05D005645 ORTHO05D007156 1.2e-71 274.6 402 39.8
SEGI_05916 Sequoiadendron giganteum HOM05D005645 ORTHO05D007156 2.1e-71 273.9 493 43.2
Medtr7g108820 Medicago truncatula HOM05D005645 ORTHO05D007156 3.5e-71 273.1 407 39.8
Medtr8g058520 Medicago truncatula HOM05D005645 ORTHO05D007156 3.5e-71 273.1 407 39.8
Actinidia24827 Actinidia chinensis HOM05D005645 ORTHO05D007156 3.9e-70 269.6 351 45.9
Pp3c4_3650 Physcomitrium patens HOM05D005645 ORTHO05D007156 3.3e-69 266.5 403 38.0
Psat3g022200 Pisum sativum HOM05D005645 ORTHO05D007156 3.3e-69 266.5 405 38.3
SHI29059 Sapria himalayana HOM05D005645 ORTHO05D007156 8.1e-68 261.9 409 38.4
Mapoly0034s0045 Marchantia polymorpha HOM05D005645 ORTHO05D007156 5.3e-67 259.2 411 38.4
AagrBONN_evm.TU.Sc2ySwM_228.5415 Anthoceros agrestis HOM05D005645 ORTHO05D007156 2.0e-66 257.3 431 35.7
CAN.G339.1 Capsicum annuum HOM05D005645 ORTHO05D007156 9.3e-64 248.4 349 42.4
MELO3C017961.2 Cucumis melo HOM05D005645 ORTHO05D007156 3.9e-62 243.0 142 77.5
Os05g0365000 Oryza sativa ssp. japonica HOM05D005645 ORTHO05D007156 3.9e-62 243.0 418 43.5
Pp3c12_6520 Physcomitrium patens HOM05D005645 ORTHO05D007156 4.3e-61 239.6 425 35.1
Zm00001eb346660 Zea mays HOM05D005645 ORTHO05D007156 6.2e-60 235.7 425 35.8
Lalb_Chr06g0163461 Lupinus albus HOM05D005645 ORTHO05D007156 7.6e-58 228.8 405 33.8
VMungo0720G2164 Vigna mungo HOM05D005645 ORTHO05D007156 3.8e-57 226.5 411 33.8
SMO331G0040 Selaginella moellendorffii HOM05D005645 ORTHO05D007156 1.9e-56 224.2 401 34.7
Phvul.007G146000 Phaseolus vulgaris HOM05D005645 ORTHO05D007156 1.8e-54 217.6 411 33.1
arahy.Tifrunner.gnm1.ann1.G1675E Arachis hypogaea HOM05D005645 ORTHO05D007156 1.6e-52 211.1 146 64.4
arahy.Tifrunner.gnm1.ann1.UILT17 Arachis hypogaea HOM05D005645 ORTHO05D007156 1.6e-52 211.1 146 64.4
Glyma.02G018450 Glycine max HOM05D005645 ORTHO05D007156 2.8e-52 210.3 409 33.3
HPP92_018255 Vanilla planifolia HOM05D005645 ORTHO05D007156 4.6e-47 193.0 403 30.0
AagrBONN_evm.TU.Sc2ySwM_117.1647 Anthoceros agrestis HOM05D005645 ORTHO05D007156 6.7e-46 189.1 438 32.0
CDE05G1077 Ceratophyllum demersum HOM05D005645 ORTHO05D007156 2.5e-37 160.6 126 58.7
MD05G1102300 Malus domestica HOM05D005645 ORTHO05D007156 1.3e-36 158.3 101 69.3
Haze_04926 Corylus avellana HOM05D005645 ORTHO05D007156 1.2e-34 151.8 295 36.3
Haze_04922 Corylus avellana HOM05D005645 ORTHO05D007156 7.7e-34 149.1 118 61.0
unitig_0.g662 Utricularia gibba HOM05D005645 ORTHO05D007156 4.3e-29 133.3 115 53.0
MD05G1102200 Malus domestica HOM05D005645 ORTHO05D007156 8.5e-17 92.4 109 49.5
Oeu046686.1 Olea europaea HOM05D005645 ORTHO05D007156 1.8e-14 84.7 60 63.3
TWI59G0946 Tripterygium wilfordii HOM05D005645 ORTHO05D007156 5.7e-13 79.7 166 35.5
FAN15G0862 Fragaria x ananassa HOM05D005645 ORTHO05D046604 3.2e-08 63.9 41 65.9
FAN07G2129 Fragaria x ananassa HOM05D005645 ORTHO05D046604 4.7e-07 60.1 66 53.0
SMO356G0542 Selaginella moellendorffii HOM05D002394 ORTHO05D002508 8.0e-07 59.3 142 30.3
arahy.Tifrunner.gnm1.ann1.56XWA4 Arachis hypogaea HOM05D002394 ORTHO05D002508 1.4e-06 58.5 125 33.6
Lalb_Chr06g0175081 Lupinus albus HOM05D002394 ORTHO05D002508 3.0e-06 57.4 125 30.4
Psat3g200840 Pisum sativum HOM05D002394 ORTHO05D002508 4.0e-06 57.0 125 31.2
Sc10g0003270 Simmondsia chinensis HOM05D002394 ORTHO05D002508 4.0e-06 57.0 125 30.4
SEGI_32380 Sequoiadendron giganteum HOM05D002394 ORTHO05D002508 5.2e-06 56.6 143 29.4
THA.LOC104822342 Tarenaya hassleriana HOM05D002394 ORTHO05D002508 5.2e-06 56.6 129 34.1
CiPaw.04G058200 Carya illinoinensis HOM05D002394 ORTHO05D002508 6.8e-06 56.2 128 31.2
DCAR_025410 Daucus carota HOM05D002394 ORTHO05D002508 8.8e-06 55.8 125 31.2


User provided reference genes

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