Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p01330 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 2627.8 1290 100.0
BraA09t35800Z Brassica rapa HOM05D004810 ORTHO05D006272 0.0e+00 2583.9 1290 98.4
BcaC04g24069 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 2541.1 1290 97.1
C09p01390 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 2526.1 1297 96.3
BolC9t53072H Brassica oleracea HOM05D004810 ORTHO05D006272 0.0e+00 2495.3 1301 95.2
BcaB01g02106 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 2398.6 1312 91.4
Sp6g01700 Schrenkiella parvula HOM05D004810 ORTHO05D006272 0.0e+00 2340.8 1317 88.0
AT4G01860 Arabidopsis thaliana HOM05D004810 ORTHO05D006272 0.0e+00 2213.0 1315 83.6
AL6G51450 Arabidopsis lyrata HOM05D004810 ORTHO05D006272 0.0e+00 2201.0 1312 82.8
Carub.0006s3538 Capsella rubella HOM05D004810 ORTHO05D006272 0.0e+00 2193.3 1319 82.0
Thhalv10027621m.g Eutrema salsugineum HOM05D004810 ORTHO05D006272 0.0e+00 2151.7 1325 82.3
Aa31LG5G1530 Aethionema arabicum HOM05D004810 ORTHO05D006272 0.0e+00 2030.0 1325 76.7
THA.LOC104825930 Tarenaya hassleriana HOM05D004810 ORTHO05D006272 0.0e+00 1850.9 1322 69.5
CARHR249820 Cardamine hirsuta HOM05D004810 ORTHO05D006272 0.0e+00 1760.7 1003 85.4
Thecc.01G322600 Theobroma cacao HOM05D004810 ORTHO05D006272 0.0e+00 1458.4 1385 54.1
Gorai.008G136000 Gossypium raimondii HOM05D004810 ORTHO05D006272 0.0e+00 1446.4 1382 54.8
GSVIVG01028203001 Vitis vinifera HOM05D004810 ORTHO05D006272 0.0e+00 1445.3 1322 54.8
Duzib138G1217 Durio zibethinus HOM05D004810 ORTHO05D006272 0.0e+00 1444.1 1390 54.6
Ciclev10018506m.g Citrus clementina HOM05D004810 ORTHO05D006272 0.0e+00 1430.2 1388 53.7
Potri.002G189400 Populus trichocarpa HOM05D004810 ORTHO05D006272 0.0e+00 1428.3 1400 53.7
Cfa004881 Carpinus fangiana HOM05D004810 ORTHO05D006272 0.0e+00 1419.8 1403 54.0
Prupe.3G004200 Prunus persica HOM05D004810 ORTHO05D006272 0.0e+00 1418.7 1372 54.0
MD09G1293000 Malus domestica HOM05D004810 ORTHO05D006272 0.0e+00 1406.0 1400 52.5
RcHm_v2.0_Chr3g0486381 Rosa chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1405.6 1389 53.5
QL12p034348 Quercus lobata HOM05D004810 ORTHO05D006272 0.0e+00 1401.7 1451 51.7
FAN23G0904 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1387.1 1379 53.4
FAN19G2038 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1384.0 1378 53.0
FvH4_1g26470 Fragaria vesca HOM05D004810 ORTHO05D006272 0.0e+00 1382.5 1384 52.7
TWI14G1319 Tripterygium wilfordii HOM05D004810 ORTHO05D006272 0.0e+00 1380.5 1401 51.7
Sabra02G0166300 Salix brachista HOM05D004810 ORTHO05D006272 0.0e+00 1374.8 1481 50.1
FAN26G0889 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1374.0 1376 52.5
Haze_05120 Corylus avellana HOM05D004810 ORTHO05D006272 0.0e+00 1372.5 1457 51.5
Manes.05G010600 Manihot esculenta HOM05D004810 ORTHO05D006272 0.0e+00 1365.9 1353 53.5
Medtr7g110260 Medicago truncatula HOM05D004810 ORTHO05D006272 0.0e+00 1364.7 1390 50.7
Sed0025982 Sechium edule HOM05D004810 ORTHO05D006272 0.0e+00 1364.7 1379 52.3
CsaV3_3G031590 Cucumis sativus L. HOM05D004810 ORTHO05D006272 0.0e+00 1360.5 1387 52.6
Lj1g0015466 Lotus japonicus HOM05D004810 ORTHO05D006272 0.0e+00 1359.0 1376 51.5
TPR.G4131 Trifolium pratense HOM05D004810 ORTHO05D006272 0.0e+00 1357.4 1383 51.0
Lalb_Chr04g0260131 Lupinus albus HOM05D004810 ORTHO05D006272 0.0e+00 1356.3 1366 51.0
CiPaw.07G123600 Carya illinoinensis HOM05D004810 ORTHO05D006272 0.0e+00 1352.4 1413 51.2
COL.COLO4_23155 Corchorus olitorius HOM05D004810 ORTHO05D006272 0.0e+00 1349.0 1383 51.8
Eucgr.K00589 Eucalyptus grandis HOM05D004810 ORTHO05D006272 0.0e+00 1344.7 1389 50.8
TAR362G0253 Trochodendron aralioides HOM05D004810 ORTHO05D006272 0.0e+00 1344.7 1388 51.4
Ca_09236_v3 Cicer arietinum L. HOM05D004810 ORTHO05D006272 0.0e+00 1333.9 1382 50.6
Phvul.001G216500 Phaseolus vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 1333.9 1381 51.4
Rhsim13G0000700 Rhododendron simsii HOM05D004810 ORTHO05D006272 0.0e+00 1332.0 1408 51.1
Nn3g21885 Nelumbo nucifera HOM05D004810 ORTHO05D006272 0.0e+00 1330.9 1386 49.7
PGR142G2149 Punica granatum HOM05D004810 ORTHO05D006272 0.0e+00 1330.9 1366 50.7
Glyma.19G220100 Glycine max HOM05D004810 ORTHO05D006272 0.0e+00 1328.9 1382 50.5
DCAR_018250 Daucus carota HOM05D004810 ORTHO05D006272 0.0e+00 1322.8 1408 49.2
arahy.Tifrunner.gnm1.ann1.RS5E8T Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 1322.0 1385 50.0
arahy.Tifrunner.gnm1.ann1.NAX4N2 Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 1309.3 1385 49.9
MELO3C012913.2 Cucumis melo HOM05D004810 ORTHO05D006272 0.0e+00 1307.0 1379 51.3
AUR62011731 Chenopodium quinoa HOM05D004810 ORTHO05D006272 0.0e+00 1305.0 1381 50.5
Actinidia21354 Actinidia chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1304.7 1393 50.3
Sopen01g030000 Solanum pennellii HOM05D004810 ORTHO05D006272 0.0e+00 1301.6 1368 49.6
PSO357G0647 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1281.2 1408 48.4
PSO170G6261 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1278.5 1408 48.2
Aqoxy5G02779 Aquilegia oxysepala HOM05D004810 ORTHO05D006272 0.0e+00 1273.8 1407 48.8
HanXRQChr06g0167991 Helianthus annuus HOM05D004810 ORTHO05D006272 0.0e+00 1273.1 1323 50.6
EL10As5g23578 Beta vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 1272.7 1402 48.4
VMungo1383G1823 Vigna mungo HOM05D004810 ORTHO05D006272 0.0e+00 1268.1 1347 50.4
Atru.chr5.899 Acer truncatum HOM05D004810 ORTHO05D006272 0.0e+00 1262.7 1155 56.3
ClCG10G011790 Citrullus lanatus HOM05D004810 ORTHO05D006272 0.0e+00 1252.3 1344 50.8
Cc01_g21880 Coffea canephora HOM05D004810 ORTHO05D006272 0.0e+00 1248.8 1475 47.2
FAN28G1956 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1245.7 1439 48.3
MSTRG.21726 Avicennia marina HOM05D004810 ORTHO05D006272 0.0e+00 1242.3 1399 47.6
Gohir.A12G121200 Gossypium hirsutum HOM05D004810 ORTHO05D006272 0.0e+00 1233.8 1156 55.1
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 0.0e+00 1232.6 1317 49.6
Hma1.2p1_0484F.1_g162890 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 0.0e+00 1221.1 1158 54.3
SGA_v2.0_scaffold80G25689 Striga asiatica HOM05D004810 ORTHO05D006272 0.0e+00 1220.7 1392 47.3
Lsat_1_v5_gn_8_167321 Lactuca sativa HOM05D004810 ORTHO05D006272 0.0e+00 1218.4 1312 49.4
Nitab4.5_0000222g0280 Nicotiana tabacum HOM05D004810 ORTHO05D006272 0.0e+00 1214.9 1363 47.9
MBI18_g09625_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D006272 0.0e+00 1201.8 1397 47.4
Psat3g018400 Pisum sativum HOM05D004810 ORTHO05D006272 0.0e+00 1194.5 1373 46.9
Hund09692 Selenicereus undatus HOM05D004810 ORTHO05D006272 0.0e+00 1192.6 1370 48.0
Lj2C1214G2 Lonicera japonica HOM05D004810 ORTHO05D006272 0.0e+00 1154.4 1357 47.7
ATR0796G051 Amborella trichopoda HOM05D004810 ORTHO05D006272 0.0e+00 1144.8 1420 43.7
CDE05G2014 Ceratophyllum demersum HOM05D004810 ORTHO05D006272 0.0e+00 1110.9 1381 44.1
HPP92_017301 Vanilla planifolia HOM05D004810 ORTHO05D006272 0.0e+00 1105.9 1393 45.6
Os03g0111800 Oryza sativa ssp. japonica HOM05D004810 ORTHO05D006272 0.0e+00 1105.1 1341 45.2
Sc18g0007580 Simmondsia chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1080.9 1076 51.8
Hma1.2p1_0484F.1_g162880 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 1.8e-302 1043.1 980 53.9
Dinv12098 Davidia involucrata HOM05D004810 ORTHO05D006272 1.2e-298 1030.4 946 53.9
CSS0014565 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 9.4e-296 1020.8 1061 51.6
CSS0019531 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 6.1e-295 1018.1 1062 51.5
Gohir.D12G125000 Gossypium hirsutum HOM05D004810 ORTHO05D006272 6.3e-276 954.9 946 52.4
Nitab4.5_0002994g0090 Nicotiana tabacum HOM05D004810 ORTHO05D006272 1.0e-241 841.3 1364 37.3
Pp3c3_23690 Physcomitrium patens HOM05D004810 ORTHO05D006272 4.7e-231 805.8 1469 37.2
Mapoly0020s0127 Marchantia polymorpha HOM05D004810 ORTHO05D006272 1.5e-224 784.3 1494 33.7
vmacro02367 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 5.2e-222 775.8 885 49.0
Migut.D00026 Erythranthe guttata HOM05D004810 ORTHO05D006272 2.4e-214 750.4 727 51.3
AagrBONN_evm.TU.Sc2ySwM_344.1995 Anthoceros agrestis HOM05D004810 ORTHO05D006272 3.1e-214 750.0 1479 34.6
AUR62024565 Chenopodium quinoa HOM05D004810 ORTHO05D006272 3.0e-209 733.4 805 49.7
Cpa.g.sc67.77 Carica papaya HOM05D004810 ORTHO05D006272 1.5e-200 704.5 597 60.1
Oeu044753.1 Olea europaea HOM05D004810 ORTHO05D006272 8.2e-183 645.6 756 47.4
unitig_62.g23902 Utricularia gibba HOM05D004810 ORTHO05D006272 6.9e-182 642.5 1311 34.3
Oeu044752.1 Olea europaea HOM05D004810 ORTHO05D006272 1.7e-172 611.3 589 51.6
CANSAT21G0194 Cannabis sativa HOM05D004810 ORTHO05D006272 4.2e-171 606.7 569 52.7
SMO137G0268 Selaginella moellendorffii HOM05D004810 ORTHO05D006272 3.8e-164 583.6 1267 32.8
Zm00001eb404090 Zea mays HOM05D004810 ORTHO05D006272 3.8e-164 583.6 764 43.3
SEGI_19859 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 6.7e-161 572.8 778 41.6
vmacro02368 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 2.1e-146 524.6 580 48.4
Migut.D00025 Erythranthe guttata HOM05D004810 ORTHO05D006272 2.7e-146 524.2 654 45.6
SEGI_21204 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 1.1e-142 512.3 882 37.3
FAN10G1333 Fragaria x ananassa HOM05D004810 ORTHO05D006272 4.6e-133 480.3 563 46.9
A02p42710 Brassica napus HOM05D004810 ORTHO05D006272 4.2e-102 377.5 206 90.3
Dinv12097 Davidia involucrata HOM05D004810 ORTHO05D006272 1.3e-90 339.3 383 49.3
MD17G1281400 Malus domestica HOM05D004810 ORTHO05D006272 3.1e-89 334.7 316 54.7
SHI15445 Sapria himalayana HOM05D004810 ORTHO05D006272 3.4e-88 331.3 402 45.5
SHI15448 Sapria himalayana HOM05D000105 ORTHO05D000023 8.4e-87 326.6 357 47.9
MCO01G012 Micromonas commoda HOM05D004810 ORTHO05D006272 2.9e-71 275.0 1495 24.1
SEGI_09896 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 3.0e-68 265.0 309 45.6
MD17G1281700 Malus domestica HOM05D004810 ORTHO05D006272 6.9e-65 253.8 265 51.7
Cpa.g.sc3588.1 Carica papaya HOM05D004810 ORTHO05D006272 9.1e-65 253.4 257 54.5
PRCOL_00001957 Prasinoderma coloniale HOM05D004810 ORTHO05D006272 5.9e-64 250.8 1281 24.4
MD17G1281300 Malus domestica HOM05D004810 ORTHO05D006272 2.1e-61 242.3 329 41.0
RcHm_v2.0_Chr3g0486501 Rosa chinensis HOM05D004810 ORTHO05D006272 6.3e-58 230.7 243 53.9
Psat4g129960 Pisum sativum HOM05D004810 ORTHO05D006272 6.3e-50 204.1 203 47.8
Solyc01g068070.4 Solanum lycopersicum HOM05D004810 ORTHO05D006272 7.0e-49 200.7 218 48.6
SEGI_37781 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 3.5e-48 198.4 298 36.9
SHI15450 Sapria himalayana HOM05D000105 ORTHO05D000023 5.5e-46 191.0 255 40.8
Atru.chr5.900 Acer truncatum HOM05D004810 ORTHO05D006272 2.1e-45 189.1 187 50.8
CBR_g26439 Chara braunii HOM05D000019 ORTHO05D000002 2.6e-43 182.2 451 28.8
RcHm_v2.0_Chr3g0486491 Rosa chinensis HOM05D004810 ORTHO05D006272 3.5e-40 171.8 185 51.4
Gohir.A12G121250 Gossypium hirsutum HOM05D004810 ORTHO05D006272 5.5e-38 164.5 170 49.4
RcHm_v2.0_Chr3g0486511 Rosa chinensis HOM05D004810 ORTHO05D006272 1.8e-33 149.4 189 43.9
MD17G1281800 Malus domestica HOM05D004810 ORTHO05D006272 6.1e-29 134.4 96 65.6
C02p62710 Brassica napus HOM05D004810 ORTHO05D006272 1.8e-28 132.9 68 86.8
SHI15443 Sapria himalayana HOM05D004810 ORTHO05D006272 6.3e-26 124.4 227 35.7
Psat0s3766g0080 Pisum sativum HOM05D002292 ORTHO05D006272 1.6e-24 119.8 80 66.2
SEGI_39451 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 2.7e-24 119.0 154 39.0
CAN.G100.30 Capsicum annuum HOM05D004810 ORTHO05D006272 7.8e-24 117.5 88 61.4
Psat0s2464g0040 Pisum sativum HOM05D004810 ORTHO05D006272 1.0e-23 117.1 109 46.8
Actinidia06394 Actinidia chinensis HOM05D004810 ORTHO05D006272 1.3e-23 116.7 147 46.9
FAN24G0870 Fragaria x ananassa HOM05D004810 ORTHO05D006272 1.3e-23 116.7 150 43.3
Lsat_1_v5_gn_2_51680 Lactuca sativa HOM05D004810 ORTHO05D006272 1.3e-18 100.1 115 44.3
RcHm_v2.0_Chr3g0486521 Rosa chinensis HOM05D004810 ORTHO05D006272 4.9e-18 98.2 88 54.5
FvH4_2g08080 Fragaria vesca HOM05D004810 ORTHO05D006272 2.7e-16 92.4 118 40.7
Zm00001eb241980 Zea mays HOM05D004810 ORTHO05D006272 1.0e-15 90.5 81 49.4
MBI14_g40313_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 1.1e-12 80.5 57 68.4
MBI15_g23571_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 1.1e-12 80.5 57 68.4
MBI13_g10212_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 1.5e-11 76.6 57 66.7
MBI14_g17170_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 2.6e-11 75.9 56 67.9
FAN14G3945 Fragaria x ananassa HOM05D004810 ORTHO05D029461 1.3e-10 73.6 48 70.8
MBI19_g30553_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 2.9e-10 72.4 54 70.4
Actinidia06392 Actinidia chinensis HOM05D004810 ORTHO05D006272 8.3e-10 70.9 53 56.6
Hund09691 Selenicereus undatus HOM05D004810 ORTHO05D006272 1.1e-09 70.5 74 48.6
FvH4_3g18411 Fragaria vesca HOM05D004810 ORTHO05D029461 1.4e-09 70.1 43 74.4
FvH4_6g46150 Fragaria vesca HOM05D004810 ORTHO05D029461 1.2e-08 67.0 48 66.7
FvH4_6g28340 Fragaria vesca HOM05D003050 ORTHO05D006272 2.0e-08 66.2 74 50.0
Eucgr.L00018 Eucalyptus grandis HOM05D005323 ORTHO05D006820 2.7e-08 65.9 189 26.5
FvH4_3g29280 Fragaria vesca HOM05D001335 ORTHO05D001184 3.5e-08 65.5 201 26.4
FAN21G3625 Fragaria x ananassa HOM05D001335 ORTHO05D001184 1.7e-07 63.2 200 25.5
Lj6C229G10 Lonicera japonica HOM05D005323 ORTHO05D006820 1.7e-07 63.2 142 28.2
Cre04.g217991 Chlamydomonas reinhardtii HOM05D004810 ORTHO05D006272 3.9e-07 62.0 118 34.7
SEGI_24481 Sequoiadendron giganteum HOM05D004661 ORTHO05D005827 3.9e-07 62.0 142 27.5
CDE01G0336 Ceratophyllum demersum HOM05D003769 ORTHO05D004521 5.0e-07 61.6 317 21.8
CARHR158060 Cardamine hirsuta HOM05D002332 ORTHO05D002509 1.9e-06 59.7 150 30.7
Eucgr.B00711 Eucalyptus grandis HOM05D003769 ORTHO05D004521 1.9e-06 59.7 315 21.6
THA.LOC104798895 Tarenaya hassleriana HOM05D002332 ORTHO05D002509 2.5e-06 59.3 151 29.8
Carub.0005s1541 Capsella rubella HOM05D002332 ORTHO05D002509 3.3e-06 58.9 197 27.4
MD17G1281500 Malus domestica HOM05D004810 ORTHO05D006272 3.3e-06 58.9 51 52.9
BcaC04g19274 Brassica carinata HOM05D004661 ORTHO05D005827 4.3e-06 58.5 138 27.5
A10p26740 Brassica napus HOM05D004661 ORTHO05D005827 4.3e-06 58.5 138 27.5
C09p65890 Brassica napus HOM05D004661 ORTHO05D005827 4.3e-06 58.5 138 27.5
BolC9t59411H Brassica oleracea HOM05D004661 ORTHO05D005827 4.3e-06 58.5 138 27.5
BraA10t44730Z Brassica rapa HOM05D004661 ORTHO05D005827 4.3e-06 58.5 138 27.5
Eucgr.F02126 Eucalyptus grandis HOM05D004661 ORTHO05D005827 5.6e-06 58.2 143 26.6
TWI12G0736 Tripterygium wilfordii HOM05D004661 ORTHO05D005827 5.6e-06 58.2 136 27.2
DCAR_013764 Daucus carota HOM05D005961 ORTHO05D007391 7.3e-06 57.8 125 30.4
Sp5g12890 Schrenkiella parvula HOM05D002332 ORTHO05D002509 7.3e-06 57.8 188 25.0
TWI56G1288 Tripterygium wilfordii HOM05D004661 ORTHO05D005827 7.3e-06 57.8 143 25.2
BcaC06g30967 Brassica carinata HOM05D004386 ORTHO05D005247 9.5e-06 57.4 187 27.3


User provided reference genes

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