Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p01130 Brassica napus HOM05D006232 ORTHO05D007746 2.7e-306 1055.0 782 100.0
BraA09t35784Z Brassica rapa HOM05D006232 ORTHO05D007746 8.8e-297 1023.5 782 97.3
BolC9t53055H Brassica oleracea HOM05D006232 ORTHO05D007746 1.9e-283 979.2 782 91.7
BcaC04g24085 Brassica carinata HOM05D006232 ORTHO05D007746 1.0e-281 973.4 783 91.4
C09p01210 Brassica napus HOM05D006232 ORTHO05D007746 1.2e-277 959.9 782 90.8
BcaB01g02134 Brassica carinata HOM05D006232 ORTHO05D007746 1.6e-266 922.9 789 85.8
Sp6g01480 Schrenkiella parvula HOM05D006232 ORTHO05D007746 5.8e-200 701.8 805 75.9
Thhalv10028437m.g Eutrema salsugineum HOM05D006232 ORTHO05D007746 1.7e-199 700.3 807 75.7
AT4G01570 Arabidopsis thaliana HOM05D006232 ORTHO05D007746 3.9e-196 689.1 813 74.8
AL6G51770 Arabidopsis lyrata HOM05D006232 ORTHO05D007746 4.3e-195 685.6 809 74.9
Carub.0006s3563 Capsella rubella HOM05D006232 ORTHO05D007746 1.1e-182 644.4 806 72.2
Aa31LG5G1290 Aethionema arabicum HOM05D006232 ORTHO05D007746 7.2e-174 615.1 800 71.5
CARHR250090 Cardamine hirsuta HOM05D006232 ORTHO05D007746 1.5e-171 607.4 800 70.6
THA.LOC104801339 Tarenaya hassleriana HOM05D006232 ORTHO05D007746 8.8e-156 555.1 804 65.4
Oeu062029.1 Olea europaea HOM05D006232 ORTHO05D007746 1.5e-131 474.6 651 50.4
Thecc.01G330100 Theobroma cacao HOM05D006232 ORTHO05D007746 4.4e-123 446.4 678 57.4
CiPaw.11G045400 Carya illinoinensis HOM05D006232 ORTHO05D007746 2.7e-120 437.2 796 60.8
CSS0005474 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 4.3e-118 429.9 689 55.4
Migut.F01833 Erythranthe guttata HOM05D006232 ORTHO05D007746 2.8e-117 427.2 641 48.2
CSS0021551 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 4.7e-117 426.4 689 55.3
Duzib138G0398 Durio zibethinus HOM05D006232 ORTHO05D007746 8.1e-117 425.6 677 56.6
Manes.07G094000 Manihot esculenta HOM05D006232 ORTHO05D007746 1.8e-116 424.5 666 56.2
Solyc11g008760.3 Solanum lycopersicum HOM05D006232 ORTHO05D007746 2.0e-115 421.0 640 48.4
QL08p048137 Quercus lobata HOM05D006232 ORTHO05D007746 4.9e-114 416.4 659 56.3
Sopen11g004540 Solanum pennellii HOM05D006232 ORTHO05D007746 1.9e-113 414.5 639 48.2
Atru.chr5.807 Acer truncatum HOM05D006232 ORTHO05D007746 2.1e-112 411.0 649 57.8
SalBow8G3454 Salvia bowleyana HOM05D006232 ORTHO05D007746 4.6e-112 409.8 826 48.9
CAN.G691.16 Capsicum annuum HOM05D006232 ORTHO05D007746 1.0e-111 408.7 633 48.3
PGSC0003DMG400016173 Solanum tuberosum HOM05D006232 ORTHO05D007746 2.3e-111 407.5 627 48.6
Cc09_g04270 Coffea canephora HOM05D006232 ORTHO05D007746 2.5e-110 404.1 620 51.5
Nitab4.5_0001677g0020 Nicotiana tabacum HOM05D006232 ORTHO05D007746 4.3e-110 403.3 654 48.2
TWI59G0137 Tripterygium wilfordii HOM05D006232 ORTHO05D007746 3.1e-108 397.1 651 53.3
Phvul.011G061000 Phaseolus vulgaris HOM05D006232 ORTHO05D007746 1.3e-106 391.7 636 46.9
Rhsim06G0114200 Rhododendron simsii HOM05D006232 ORTHO05D007746 4.9e-106 389.8 692 52.7
vmacro04311 Vaccinium macrocarpon HOM05D006232 ORTHO05D007746 1.9e-105 387.9 652 54.6
MSTRG.8185 Avicennia marina HOM05D006232 ORTHO05D007746 2.1e-104 384.4 656 43.9
Cpa.g.sc314.5 Carica papaya HOM05D006232 ORTHO05D007746 2.7e-104 384.0 794 57.1
Potri.002G182900 Populus trichocarpa HOM05D006232 ORTHO05D007746 6.0e-104 382.9 641 55.4
Sabra02G0132400 Salix brachista HOM05D006232 ORTHO05D007746 5.6e-102 376.3 641 54.1
Haze_15770 Corylus avellana HOM05D006232 ORTHO05D007746 9.6e-102 375.6 649 55.6
SGA_v2.0_scaffold153G36899 Striga asiatica HOM05D006232 ORTHO05D007315 1.1e-100 372.1 650 48.5
Sc15g0005080 Simmondsia chinensis HOM05D006232 ORTHO05D007746 1.8e-100 371.3 666 53.2
CSS0047958 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 2.4e-100 370.9 685 52.3
Gohir.D07G137500 Gossypium hirsutum HOM05D006232 ORTHO05D007746 2.6e-99 367.5 673 53.0
Aqoxy3G03779 Aquilegia oxysepala HOM05D006232 ORTHO05D007746 3.8e-98 363.6 649 53.5
Prupe.2G203600 Prunus persica HOM05D006232 ORTHO05D007746 1.4e-97 361.7 671 52.6
Actinidia23019 Actinidia chinensis HOM05D006232 ORTHO05D007746 3.2e-97 360.5 667 52.8
EL10Ac1g00638 Beta vulgaris HOM05D006232 ORTHO05D007746 3.5e-96 357.1 661 51.6
arahy.Tifrunner.gnm1.ann1.NHK9RM Arachis hypogaea HOM05D006232 ORTHO05D007746 4.6e-96 356.7 659 39.0
EL10Ac1g00635 Beta vulgaris HOM05D006232 ORTHO05D007746 1.0e-95 355.5 653 52.4
Lalb_Chr15g0076621 Lupinus albus HOM05D006232 ORTHO05D007746 1.3e-95 355.1 640 53.9
Gorai.001G149600 Gossypium raimondii HOM05D006232 ORTHO05D007746 3.9e-95 353.6 649 53.6
Potri.002G183100 Populus trichocarpa HOM05D006232 ORTHO05D007746 1.6e-93 348.2 641 52.9
VMungo1127G1689 Vigna mungo HOM05D006232 ORTHO05D007746 2.8e-93 347.4 637 52.4
DCAR_015569 Daucus carota HOM05D006232 ORTHO05D007746 2.4e-92 344.4 643 50.9
Gohir.A07G133100 Gossypium hirsutum HOM05D006232 ORTHO05D007746 3.1e-92 344.0 649 53.2
FAN10G2312 Fragaria x ananassa HOM05D006232 ORTHO05D007746 9.0e-92 342.4 616 50.8
AUR62025831 Chenopodium quinoa HOM05D006232 ORTHO05D007746 3.4e-91 340.5 670 50.0
arahy.Tifrunner.gnm1.ann1.YGP4KT Arachis hypogaea HOM05D006232 ORTHO05D007746 9.9e-91 339.0 653 50.1
arahy.Tifrunner.gnm1.ann1.E4FCEH Arachis hypogaea HOM05D006232 ORTHO05D007746 2.9e-90 337.4 653 48.9
Nn2g14420 Nelumbo nucifera HOM05D006232 ORTHO05D007746 7.1e-89 332.8 675 50.2
Nitab4.5_0000743g0190 Nicotiana tabacum HOM05D006232 ORTHO05D007746 5.1e-87 326.6 550 48.4
PSO782G2059 Papaver somniferum HOM05D006232 ORTHO05D007746 5.1e-87 326.6 651 48.2
SHI19982 Sapria himalayana HOM05D006232 ORTHO05D007746 1.9e-86 324.7 653 48.1
FAN03G0759 Fragaria x ananassa HOM05D006232 ORTHO05D007746 1.3e-85 322.0 613 51.2
Peaxi162Scf00254g00041 Petunia axillaris HOM05D006232 ORTHO05D007746 1.8e-84 318.2 528 51.9
MBI12_g26899_MAGBIO Magnolia biondii HOM05D006232 ORTHO05D007746 1.3e-82 312.0 645 51.5
FvH4_7g18170 Fragaria vesca HOM05D006232 ORTHO05D007746 4.9e-82 310.1 613 50.4
FAN06G0943 Fragaria x ananassa HOM05D006232 ORTHO05D007746 4.9e-82 310.1 613 50.4
Peaxi162Scf00890g00001 Petunia axillaris HOM05D006232 ORTHO05D007746 4.9e-82 310.1 528 53.0
FAN06G1608 Fragaria x ananassa HOM05D006232 ORTHO05D007746 8.4e-82 309.3 613 50.2
RcHm_v2.0_Chr1g0361811 Rosa chinensis HOM05D006232 ORTHO05D007746 3.0e-79 300.8 638 48.9
MD01G1097600 Malus domestica HOM05D006232 ORTHO05D007746 1.3e-77 295.4 479 43.4
MELO3C022296.2 Cucumis melo HOM05D006232 ORTHO05D007746 1.6e-77 295.0 644 49.1
Sed0020235 Sechium edule HOM05D006232 ORTHO05D007746 1.8e-76 291.6 619 52.3
Psat3g203240 Pisum sativum HOM05D006232 ORTHO05D007746 2.4e-76 291.2 657 49.9
Glyma.11G135300 Glycine max HOM05D006232 ORTHO05D007746 5.3e-76 290.0 610 51.1
Lj1g0009831 Lotus japonicus HOM05D006232 ORTHO05D007746 1.5e-75 288.5 631 49.8
Eucgr.A00015 Eucalyptus grandis HOM05D006232 ORTHO05D007746 4.5e-75 287.0 637 49.5
CDE09G0095 Ceratophyllum demersum HOM05D006232 ORTHO05D007746 1.3e-74 285.4 637 48.7
Medtr7g016910 Medicago truncatula HOM05D006232 ORTHO05D007746 2.5e-73 281.2 659 47.0
Ciclev10023806m.g Citrus clementina HOM05D006232 ORTHO05D007746 1.2e-72 278.9 274 55.5
ECA247G0464 Erigeron canadensis HOM05D006232 ORTHO05D007746 6.1e-72 276.6 548 50.7
Lsat_1_v5_gn_4_109581 Lactuca sativa HOM05D006232 ORTHO05D007746 1.0e-71 275.8 639 51.2
Dinv01552 Davidia involucrata HOM05D006232 ORTHO05D007746 3.3e-70 270.8 317 50.2
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 2.8e-69 267.7 644 50.0
TPR.G23396 Trifolium pratense HOM05D006232 ORTHO05D007746 8.2e-69 266.2 661 47.2
PGR092G0006 Punica granatum HOM05D006232 ORTHO05D007746 3.8e-66 257.3 617 48.9
SGA_v2.0_scaffold83G26365 Striga asiatica HOM05D006232 ORTHO05D007746 3.8e-66 257.3 500 42.8
FAN01G1185 Fragaria x ananassa HOM05D006232 ORTHO05D007746 2.5e-65 254.6 669 44.5
arahy.Tifrunner.gnm1.ann1.MJ9C76 Arachis hypogaea HOM05D006232 ORTHO05D007746 3.0e-63 247.7 513 52.8
ATR0684G123 Amborella trichopoda HOM05D006232 ORTHO05D007746 3.9e-63 247.3 634 48.9
COL.COLO4_23076 Corchorus olitorius HOM05D006232 ORTHO05D007746 2.0e-62 245.0 664 35.5
MD01G1096200 Malus domestica HOM05D006232 ORTHO05D007746 1.8e-60 238.4 284 48.2
CSS0030017 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 5.3e-60 236.9 457 57.3
FAN10G2235 Fragaria x ananassa HOM05D006232 ORTHO05D007746 5.9e-59 233.4 244 52.5
MD01G1095900 Malus domestica HOM05D006232 ORTHO05D007746 7.9e-56 223.0 275 52.7
Ca_06909_v3 Cicer arietinum L. HOM05D006232 ORTHO05D007746 2.4e-52 211.5 441 57.1
TAR371G0213 Trochodendron aralioides HOM05D006232 ORTHO05D007746 3.5e-51 207.6 307 42.3
Zm00001eb055010 Zea mays HOM05D006232 ORTHO05D007746 2.2e-50 204.9 655 40.6
HanXRQChr09g0270591 Helianthus annuus HOM05D006232 ORTHO05D007746 2.0e-46 191.8 181 52.5
GSVIVG01010456001 Vitis vinifera HOM05D006232 ORTHO05D007746 1.3e-42 179.1 190 52.1
TAR371G1107 Trochodendron aralioides HOM05D006232 ORTHO05D007746 1.9e-41 175.3 173 54.9
HPP92_002273 Vanilla planifolia HOM05D006232 ORTHO05D007746 8.0e-40 169.9 187 48.7
Os03g0712900 Oryza sativa ssp. japonica HOM05D006232 ORTHO05D007746 2.0e-38 165.2 229 40.2
CsaV3_6G008430 Cucumis sativus L. HOM05D006232 ORTHO05D007746 3.5e-35 154.5 623 41.3
Hund17178 Selenicereus undatus HOM05D006232 ORTHO05D007746 7.7e-35 153.3 239 39.3
unitig_62.g23853 Utricularia gibba HOM05D006232 ORTHO05D007746 4.0e-31 141.0 196 42.9
unitig_64.g29781 Utricularia gibba HOM05D006232 ORTHO05D007746 4.0e-31 141.0 196 42.9
Nn6g33415 Nelumbo nucifera HOM05D006232 ORTHO05D007746 2.0e-30 138.7 161 46.6
Dinv01553 Davidia involucrata HOM05D006232 ORTHO05D007746 3.7e-29 134.4 109 67.0
SEGI_19483 Sequoiadendron giganteum HOM05D006232 ORTHO05D007746 3.7e-29 134.4 227 37.0
MD01G1096300 Malus domestica HOM05D006232 ORTHO05D007746 6.6e-26 123.6 109 60.6
Hma1.2p1_0074F.1_g038910 Hydrangea macrophylla HOM05D006232 ORTHO05D007746 3.4e-22 111.3 332 57.8
SGA_v2.0_scaffold83G26364 Striga asiatica HOM05D003442 ORTHO05D004005 1.3e-21 109.4 145 44.1
Lj1P725T29 Lonicera japonica HOM05D006232 ORTHO05D007746 2.9e-21 108.2 166 48.2
CAN.G691.7 Capsicum annuum HOM05D006232 ORTHO05D007746 3.9e-18 97.8 114 47.4
CAN.G395.52 Capsicum annuum HOM05D006232 ORTHO05D007746 4.7e-16 90.9 98 43.9
Lj1P725T28 Lonicera japonica HOM05D006232 ORTHO05D007746 4.6e-11 74.3 47 76.6
Sc02g0005770 Simmondsia chinensis HOM05D006232 ORTHO05D007746 1.1e-09 69.7 95 49.5
CDE11G0690 Ceratophyllum demersum HOM05D002676 ORTHO05D003194 1.2e-08 66.2 45 60.0
SGA_v2.0_scaffold4055G54421 Striga asiatica HOM05D006232 ORTHO05D007746 1.6e-08 65.9 181 42.0
Sp3g20430 Schrenkiella parvula HOM05D000424 ORTHO05D000355 2.1e-08 65.5 180 30.0
Dinv15329 Davidia involucrata HOM05D006232 ORTHO05D007746 3.6e-08 64.7 163 65.6
MD01G1131700 Malus domestica HOM05D006232 ORTHO05D007746 6.2e-08 63.9 228 25.9
BcaB03g14655 Brassica carinata HOM05D000424 ORTHO05D000355 8.1e-08 63.5 174 29.3
MELO3C017038.2 Cucumis melo HOM05D006218 ORTHO05D007338 1.4e-07 62.8 171 25.7
Thhalv10020419m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 3.1e-07 61.6 177 28.8
Sc02g0005780 Simmondsia chinensis HOM05D006232 ORTHO05D007746 3.1e-07 61.6 36 72.2
PGR004G1128 Punica granatum HOM05D006895 ORTHO05D008605 5.2e-07 60.8 166 27.7
Manes.08G078400 Manihot esculenta HOM05D006895 ORTHO05D008605 1.2e-06 59.7 119 32.8
A03p42910 Brassica napus HOM05D000424 ORTHO05D000355 2.0e-06 58.9 174 28.7
C03p52660 Brassica napus HOM05D000424 ORTHO05D000355 2.0e-06 58.9 174 28.7
BraA03t13435Z Brassica rapa HOM05D000424 ORTHO05D000355 2.0e-06 58.9 174 28.7
Carub.0003s2283 Capsella rubella HOM05D000424 ORTHO05D000355 2.0e-06 58.9 180 27.2
BcaC01g03431 Brassica carinata HOM05D000424 ORTHO05D000355 3.4e-06 58.2 174 28.2
BolC3t17534H Brassica oleracea HOM05D000424 ORTHO05D000355 3.4e-06 58.2 174 28.2
HanXRQChr11g0349291 Helianthus annuus HOM05D006895 ORTHO05D008605 4.4e-06 57.8 124 29.8
Oeu049215.1 Olea europaea HOM05D006895 ORTHO05D008605 4.4e-06 57.8 186 25.3
CsaV3_4G037400 Cucumis sativus L. HOM05D006218 ORTHO05D007338 7.5e-06 57.0 174 24.7
QL02p015096 Quercus lobata HOM05D006218 ORTHO05D007338 7.5e-06 57.0 210 22.4
Sc01g0004190 Simmondsia chinensis HOM05D006895 ORTHO05D008605 7.5e-06 57.0 189 27.5


User provided reference genes

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