Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p00620 Brassica napus HOM05D001952 ORTHO05D004913 3.1e-265 917.9 468 100.0
C09p00240 Brassica napus HOM05D001952 ORTHO05D004913 1.9e-262 908.7 470 99.1
BraA09t35698Z Brassica rapa HOM05D001952 ORTHO05D004913 6.0e-261 903.7 470 98.1
BolC9t52959H Brassica oleracea HOM05D001952 ORTHO05D004913 8.8e-236 820.1 477 89.1
BcaC04g24187 Brassica carinata HOM05D001952 ORTHO05D004913 5.7e-235 817.4 472 89.8
BcaB01g02233 Brassica carinata HOM05D001952 ORTHO05D004913 4.7e-229 797.7 481 86.9
Thhalv10025092m.g Eutrema salsugineum HOM05D001952 ORTHO05D004913 9.8e-211 736.9 477 78.4
AL6G53250 Arabidopsis lyrata HOM05D001952 ORTHO05D004913 9.5e-206 720.3 484 77.3
CARHR248310 Cardamine hirsuta HOM05D001952 ORTHO05D004913 9.8e-203 710.3 482 76.8
Carub.0005s0957 Capsella rubella HOM05D001952 ORTHO05D004913 2.4e-201 705.7 489 74.6
AT4G00231 Arabidopsis thaliana HOM05D001952 ORTHO05D004913 5.4e-201 704.5 476 76.3
Sp6g00320 Schrenkiella parvula HOM05D001952 ORTHO05D004913 3.6e-197 691.8 479 76.6
Aa31LG4G9800 Aethionema arabicum HOM05D001952 ORTHO05D004913 4.2e-177 625.2 475 69.1
Aa31LG11G5430 Aethionema arabicum HOM05D001952 ORTHO05D004913 9.6e-174 614.0 474 68.1
THA.LOC104801468 Tarenaya hassleriana HOM05D001952 ORTHO05D004913 1.5e-171 606.7 481 66.3
Carub.0006s2681 Capsella rubella HOM05D001952 ORTHO05D004913 9.6e-166 587.4 434 70.5
QL08p050945 Quercus lobata HOM05D001952 ORTHO05D004913 2.8e-141 506.1 489 55.6
Rhsim05G0144200 Rhododendron simsii HOM05D001952 ORTHO05D004913 2.1e-136 490.0 483 54.2
Haze_00291 Corylus avellana HOM05D001952 ORTHO05D004913 2.7e-136 489.6 475 55.4
Aa31LG10G10140 Aethionema arabicum HOM05D001952 ORTHO05D004913 3.6e-136 489.2 399 65.9
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 3.6e-136 489.2 467 56.1
CSS0007104 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 2.0e-134 483.4 489 53.8
MD15G1435200 Malus domestica HOM05D001952 ORTHO05D004913 2.0e-134 483.4 487 51.3
CSS0039830 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 3.3e-134 482.6 488 53.9
Cpa.g.sc753.2 Carica papaya HOM05D001952 ORTHO05D004913 9.7e-134 481.1 485 52.0
Ciclev10004825m.g Citrus clementina HOM05D001952 ORTHO05D004913 1.1e-132 477.6 488 52.3
TWI34G0947 Tripterygium wilfordii HOM05D001952 ORTHO05D004913 2.4e-132 476.5 481 53.4
Oeu024552.2 Olea europaea HOM05D001952 ORTHO05D004913 7.7e-131 471.5 488 51.4
Manes.05G041100 Manihot esculenta HOM05D001952 ORTHO05D004913 5.0e-130 468.8 488 51.8
RcHm_v2.0_Chr1g0351801 Rosa chinensis HOM05D001952 ORTHO05D004913 6.5e-130 468.4 487 52.4
COL.COLO4_19760 Corchorus olitorius HOM05D001952 ORTHO05D004913 1.4e-129 467.2 489 51.7
Hund16968 Selenicereus undatus HOM05D001952 ORTHO05D004913 1.9e-129 466.8 487 52.4
FAN06G4730 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.5e-129 466.5 486 51.6
Gorai.002G109800 Gossypium raimondii HOM05D001952 ORTHO05D004913 4.2e-129 465.7 486 51.4
Atru.chr1.534 Acer truncatum HOM05D001952 ORTHO05D004913 5.5e-129 465.3 482 52.3
FAN03G2676 Fragaria x ananassa HOM05D001952 ORTHO05D004913 7.2e-129 464.9 486 51.2
FAN10G0713 Fragaria x ananassa HOM05D001952 ORTHO05D004913 7.2e-129 464.9 486 51.0
FAN10G1564 Fragaria x ananassa HOM05D001952 ORTHO05D004913 7.2e-129 464.9 486 51.0
Duzib213G0290 Durio zibethinus HOM05D001952 ORTHO05D004913 9.4e-129 464.5 481 52.6
FvH4_7g08540 Fragaria vesca HOM05D001952 ORTHO05D004913 6.1e-128 461.8 486 51.2
AUR62004280 Chenopodium quinoa HOM05D001952 ORTHO05D004913 1.0e-127 461.1 490 50.6
Nitab4.5_0003477g0020 Nicotiana tabacum HOM05D001952 ORTHO05D004913 1.8e-127 460.3 488 50.4
Nitab4.5_0000603g0070 Nicotiana tabacum HOM05D001952 ORTHO05D004913 3.0e-127 459.5 489 50.9
Thecc.07G183300 Theobroma cacao HOM05D001952 ORTHO05D004913 3.0e-127 459.5 481 51.8
TAR375G0220 Trochodendron aralioides HOM05D001952 ORTHO05D004913 3.9e-127 459.1 487 52.0
Gohir.D01G084100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 6.7e-127 458.4 486 50.8
Gohir.A01G099700 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.5e-126 457.2 487 50.7
Hma1.2p1_0132F.1_g060740 Hydrangea macrophylla HOM05D001952 ORTHO05D004913 2.0e-126 456.8 486 51.4
FAN06G0866 Fragaria x ananassa HOM05D001952 ORTHO05D004913 5.7e-126 455.3 484 50.8
Sopen02g025360 Solanum pennellii HOM05D001952 ORTHO05D004913 7.4e-126 454.9 491 50.5
FvH4_7g12770 Fragaria vesca HOM05D001952 ORTHO05D004913 1.3e-125 454.1 484 50.8
AUR62033377 Chenopodium quinoa HOM05D001952 ORTHO05D004913 1.7e-125 453.8 490 49.6
Solyc02g080650.3 Solanum lycopersicum HOM05D001952 ORTHO05D004913 1.7e-125 453.8 490 49.6
FAN06G0845 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.8e-125 453.0 484 50.8
CANSAT56G1737 Cannabis sativa HOM05D001952 ORTHO05D004913 6.3e-125 451.8 492 51.0
PGSC0003DMG400016476 Solanum tuberosum HOM05D001952 ORTHO05D004913 6.3e-125 451.8 490 49.4
Ah.05g175860 Amaranthus hybridus HOM05D001952 ORTHO05D004913 1.1e-124 451.1 489 49.1
PGR004G1086 Punica granatum HOM05D001952 ORTHO05D004913 1.1e-124 451.1 489 50.1
Cc02_g37060 Coffea canephora HOM05D001952 ORTHO05D004913 4.1e-124 449.1 484 50.2
arahy.Tifrunner.gnm1.ann1.7790ZZ Arachis hypogaea HOM05D001952 ORTHO05D004913 5.3e-124 448.7 493 48.5
arahy.Tifrunner.gnm1.ann1.U9VUHP Arachis hypogaea HOM05D001952 ORTHO05D004913 5.3e-124 448.7 492 48.8
arahy.Tifrunner.gnm1.ann1.Z6RYGL Arachis hypogaea HOM05D001952 ORTHO05D004913 5.3e-124 448.7 492 48.8
Gohir.D01G083600 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.2e-123 447.6 487 50.3
CAN.G1014.4 Capsicum annuum HOM05D001952 ORTHO05D004913 1.5e-123 447.2 481 49.9
Lsat_1_v5_gn_7_6921 Lactuca sativa HOM05D001952 ORTHO05D004913 2.6e-123 446.4 483 49.5
Glyma.18G215400 Glycine max HOM05D001952 ORTHO05D004913 2.9e-122 443.0 492 49.8
Potri.014G074900 Populus trichocarpa HOM05D001952 ORTHO05D004913 6.5e-122 441.8 497 49.5
MELO3C003326.2 Cucumis melo HOM05D001952 ORTHO05D004913 1.1e-121 441.0 491 49.5
PGSC0003DMG402027917 Solanum tuberosum HOM05D001952 ORTHO05D004913 1.9e-121 440.3 476 49.4
Sc02g0002270 Simmondsia chinensis HOM05D001952 ORTHO05D004913 4.2e-121 439.1 482 47.5
EL10Ac1g00960 Beta vulgaris HOM05D001952 ORTHO05D004913 9.4e-121 438.0 493 48.3
Lj5g0018602 Lotus japonicus HOM05D001952 ORTHO05D004913 1.6e-120 437.2 489 48.5
Lalb_Chr19g0127181 Lupinus albus HOM05D001952 ORTHO05D004913 2.7e-120 436.4 487 49.1
Sabra14G0053600 Salix brachista HOM05D001952 ORTHO05D004913 2.7e-120 436.4 496 49.0
VMungo1383G2849 Vigna mungo HOM05D001952 ORTHO05D004913 2.7e-120 436.4 493 49.9
ECA236G1094 Erigeron canadensis HOM05D001952 ORTHO05D004913 3.0e-119 433.0 473 49.5
ClCG09G012850 Citrullus lanatus HOM05D001952 ORTHO05D004913 3.9e-119 432.6 487 49.1
Medtr7g075940 Medicago truncatula HOM05D001952 ORTHO05D004913 3.9e-119 432.6 481 49.7
Lj6A55T16 Lonicera japonica HOM05D001952 ORTHO05D004913 6.7e-119 431.8 488 49.0
Migut.D01755 Erythranthe guttata HOM05D001952 ORTHO05D004913 8.8e-119 431.4 483 48.9
SGA_v2.0_scaffold7G04047 Striga asiatica HOM05D001952 ORTHO05D004913 8.8e-119 431.4 489 47.9
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 1.1e-118 431.0 484 49.4
RcHm_v2.0_Chr1g0313121 Rosa chinensis HOM05D001952 ORTHO05D004913 1.5e-118 430.6 480 49.4
Psat4g209120 Pisum sativum HOM05D001952 ORTHO05D004913 2.6e-118 429.9 472 49.8
Peaxi162Scf00231g00244 Petunia axillaris HOM05D001952 ORTHO05D004913 7.4e-118 428.3 488 47.3
Psat3g112920 Pisum sativum HOM05D001952 ORTHO05D004913 6.3e-117 425.2 472 48.5
SalBow7G2566 Salvia bowleyana HOM05D001952 ORTHO05D004913 1.1e-116 424.5 483 50.5
Sed0000408 Sechium edule HOM05D001952 ORTHO05D004913 1.8e-116 423.7 488 47.3
Migut.L00973 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.6e-115 420.6 483 47.6
DCAR_006897 Daucus carota HOM05D001952 ORTHO05D004913 2.0e-115 420.2 479 49.7
Migut.L00878 Erythranthe guttata HOM05D001952 ORTHO05D004913 2.6e-115 419.9 480 47.3
HanXRQChr04g0122171 Helianthus annuus HOM05D001952 ORTHO05D004913 1.7e-114 417.2 482 47.1
Aqoxy5G00703 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 2.2e-114 416.8 478 46.7
Aqoxy2G02797 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 8.5e-114 414.8 481 46.6
Eucgr.H05060 Eucalyptus grandis HOM05D001952 ORTHO05D004913 1.1e-113 414.5 490 46.7
MBI05_g28393_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 6.1e-112 408.7 479 47.2
PSO782G1679 Papaver somniferum HOM05D001952 ORTHO05D004913 6.8e-111 405.2 482 48.3
PSO478G1189 Papaver somniferum HOM05D001952 ORTHO05D004913 1.2e-110 404.4 482 47.5
Phvul.005G009900 Phaseolus vulgaris HOM05D001952 ORTHO05D004913 1.2e-110 404.4 480 48.1
MBI17_g11655_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 2.0e-110 403.7 470 47.0
Peaxi162Scf00207g01356 Petunia axillaris HOM05D001952 ORTHO05D004913 3.4e-110 402.9 516 43.4
Dinv32411 Davidia involucrata HOM05D001952 ORTHO05D004913 2.2e-109 400.2 369 55.6
vmacro19640 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 3.7e-109 399.4 474 47.9
Prupe.2G152200 Prunus persica HOM05D001952 ORTHO05D004913 1.1e-108 397.9 368 52.4
CiPaw.02G175900 Carya illinoinensis HOM05D001952 ORTHO05D004913 1.8e-108 397.1 403 52.6
Lj4g0006210 Lotus japonicus HOM05D001952 ORTHO05D004913 1.0e-103 381.3 470 46.2
unitig_0.g170 Utricularia gibba HOM05D001952 ORTHO05D004913 1.0e-103 381.3 484 43.4
CsaV3_3G049900 Cucumis sativus L. HOM05D001952 ORTHO05D004913 7.2e-97 358.6 378 49.5
TAR624G0159 Trochodendron aralioides HOM05D001952 ORTHO05D004913 2.1e-96 357.1 476 43.7
Gohir.A01G099100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.2e-94 351.3 472 44.5
Os03g0118900 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D004913 2.9e-85 320.1 466 41.2
Hund09554 Selenicereus undatus HOM05D001952 ORTHO05D004913 4.1e-84 316.2 401 44.4
MD07G1124700 Malus domestica HOM05D001952 ORTHO05D004913 5.4e-84 315.8 323 50.2
ATR0820G267 Amborella trichopoda HOM05D001952 ORTHO05D004913 7.8e-83 312.0 529 36.3
Zm00001eb001350 Zea mays HOM05D001952 ORTHO05D004913 3.0e-82 310.1 457 40.9
vmacro08923 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 3.9e-82 309.7 359 46.5
TPR.G13243 Trifolium pratense HOM05D001952 ORTHO05D004913 1.5e-81 307.8 282 55.7
TPR.G6584 Trifolium pratense HOM05D001952 ORTHO05D004913 1.1e-79 301.6 282 56.0
PSO781G0092 Papaver somniferum HOM05D001952 ORTHO05D004913 1.5e-78 297.7 505 39.4
TPR.G18232 Trifolium pratense HOM05D001952 ORTHO05D004913 3.4e-78 296.6 282 54.6
CDE01G0692 Ceratophyllum demersum HOM05D001952 ORTHO05D004913 1.1e-76 291.6 482 38.6
FAN01G0405 Fragaria x ananassa HOM05D001952 ORTHO05D004913 6.0e-75 285.8 470 39.4
Ca_07850_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 3.9e-74 283.1 246 57.7
SMO351G0039 Selaginella moellendorffii HOM05D001952 ORTHO05D004913 5.4e-68 262.7 461 36.4
Gorai.002G109400 Gossypium raimondii HOM05D001952 ORTHO05D004913 1.6e-64 251.1 400 38.0
Pp3c21_1420 Physcomitrium patens HOM05D001952 ORTHO05D004913 3.1e-63 246.9 532 34.0
GSVIVG01026499001 Vitis vinifera HOM05D001952 ORTHO05D008796 3.4e-62 243.4 359 42.6
SEGI_14537 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 7.1e-60 235.7 417 36.0
MD02G1196600 Malus domestica HOM05D001952 ORTHO05D004913 1.0e-58 231.9 283 43.1
Cfa001612 Carpinus fangiana HOM05D001952 ORTHO05D004913 5.1e-58 229.6 181 63.5
PSO782G4203 Papaver somniferum HOM05D001952 ORTHO05D004913 2.1e-56 224.2 178 62.4
Eucgr.I00845 Eucalyptus grandis HOM05D001952 ORTHO05D004913 3.6e-56 223.4 356 37.9
TPR.G34261 Trifolium pratense HOM05D001952 ORTHO05D004913 1.1e-55 221.9 151 70.2
Lj1g0014823 Lotus japonicus HOM05D001952 ORTHO05D004913 1.5e-54 218.0 268 45.5
AagrBONN_evm.TU.Sc2ySwM_117.782 Anthoceros agrestis HOM05D001952 ORTHO05D004913 2.0e-54 217.6 477 32.5
Mapoly0062s0112 Marchantia polymorpha HOM05D001952 ORTHO05D004913 1.1e-52 211.8 591 31.0
Eucgr.I00835 Eucalyptus grandis HOM05D001952 ORTHO05D004913 7.1e-52 209.1 368 35.1
PSO781G0068 Papaver somniferum HOM05D001952 ORTHO05D004913 3.3e-49 200.3 483 31.9
SEGI_36330 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 7.3e-49 199.1 374 35.0
PSO541G1892 Papaver somniferum HOM05D001952 ORTHO05D004913 9.6e-49 198.7 478 32.2
Lj6A55T17 Lonicera japonica HOM05D001952 ORTHO05D004913 6.2e-48 196.1 256 44.5
SEGI_08371 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 1.4e-44 184.9 473 29.6
PSO541G2051 Papaver somniferum HOM05D001952 ORTHO05D004913 5.1e-42 176.4 312 37.2
Migut.D01751 Erythranthe guttata HOM05D001952 ORTHO05D004913 2.5e-41 174.1 225 45.3
Potri.008G158901 Populus trichocarpa HOM05D001952 ORTHO05D004913 5.6e-41 172.9 175 54.3
Glyma.09G276502 Glycine max HOM05D001952 ORTHO05D004913 9.6e-41 172.2 231 43.3
PSO781G0254 Papaver somniferum HOM05D001952 ORTHO05D004913 2.8e-40 170.6 399 30.6
MBI17_g11657_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 4.5e-38 163.3 271 37.3
TPR.G23686 Trifolium pratense HOM05D001952 ORTHO05D012360 7.1e-36 156.0 433 30.7
CBR_g31682 Chara braunii HOM05D001952 ORTHO05D004913 7.9e-35 152.5 173 46.2
TPR.G37851 Trifolium pratense HOM05D001952 ORTHO05D004913 1.8e-34 151.4 325 33.8
TPR.G34267 Trifolium pratense HOM05D001952 ORTHO05D004913 3.0e-34 150.6 192 45.3
HPP92_001565 Vanilla planifolia HOM05D001952 ORTHO05D004913 3.1e-31 140.6 250 36.4
Peaxi162Scf00153g01322 Petunia axillaris HOM05D001952 ORTHO05D004913 6.9e-31 139.4 254 35.4
Sopen04g024480 Solanum pennellii HOM05D001952 ORTHO05D004913 4.6e-27 126.7 90 61.1
Oeu061480.1 Olea europaea HOM05D001952 ORTHO05D004913 5.1e-26 123.2 455 26.2
arahy.Tifrunner.gnm1.ann1.LMZ4B6 Arachis hypogaea HOM05D001952 ORTHO05D004913 6.7e-26 122.9 115 53.0
MD07G1124800 Malus domestica HOM05D001952 ORTHO05D004913 8.7e-26 122.5 138 49.3
FAN03G2381 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.5e-25 121.7 95 64.2
Nitab4.5_0001040g0030 Nicotiana tabacum HOM05D001952 ORTHO05D004913 1.5e-25 121.7 116 54.3
Ca_07851_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 2.4e-23 114.4 122 44.3
PSO326G0001 Papaver somniferum HOM05D001952 ORTHO05D004913 1.3e-21 108.6 132 47.0
PSO782G4156 Papaver somniferum HOM05D001952 ORTHO05D004913 1.7e-21 108.2 132 47.0
Cre08.g374300 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D004913 1.2e-19 102.1 124 38.7
TPR.G6606 Trifolium pratense HOM05D001952 ORTHO05D004913 3.6e-19 100.5 136 45.6
Duzib268G0813 Durio zibethinus HOM05D001952 ORTHO05D004913 3.7e-16 90.5 115 43.5
Sabra14G0053500 Salix brachista HOM05D001952 ORTHO05D004913 3.7e-16 90.5 298 31.5
arahy.Tifrunner.gnm1.ann1.6B0T5V Arachis hypogaea HOM05D001952 ORTHO05D004913 3.2e-12 77.4 133 36.8
MCO07G121 Micromonas commoda HOM05D001952 ORTHO05D004913 9.4e-12 75.9 168 28.6
FAN03G1970 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.1e-11 74.7 72 52.8
Cfa025427 Carpinus fangiana HOM05D000553 ORTHO05D125085 3.5e-06 57.4 78 30.8


User provided reference genes

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