Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p00410 Brassica napus HOM05D005277 ORTHO05D006319 2.4e-46 188.3 86 100.0
A03p32120 Brassica napus HOM05D005277 ORTHO05D006319 8.5e-44 179.9 84 97.6
BraA03t12382Z Brassica rapa HOM05D005277 ORTHO05D006319 8.5e-44 179.9 84 97.6
BcaNung07162 Brassica carinata HOM05D005277 ORTHO05D006319 1.9e-43 178.7 85 97.6
BolC3t16185H Brassica oleracea HOM05D005277 ORTHO05D006319 4.2e-43 177.6 88 95.5
BcaC01g06868 Brassica carinata HOM05D005277 ORTHO05D006319 1.2e-42 176.0 82 96.3
BcaB01g02260 Brassica carinata HOM05D005277 ORTHO05D006319 2.1e-42 175.3 89 93.3
BcaC04g24159 Brassica carinata HOM05D005277 ORTHO05D006319 2.7e-42 174.9 82 98.8
BcaNung05357 Brassica carinata HOM05D005277 ORTHO05D006319 4.7e-42 174.1 82 96.3
C07p62700 Brassica napus HOM05D005277 ORTHO05D006319 6.1e-42 173.7 85 94.1
BolC7t46684H Brassica oleracea HOM05D005277 ORTHO05D006319 6.1e-42 173.7 85 94.1
A03p65670 Brassica napus HOM05D005277 ORTHO05D006319 1.0e-41 172.9 88 93.2
BraA03t15618Z Brassica rapa HOM05D005277 ORTHO05D006319 1.0e-41 172.9 88 93.2
CARHR248750 Cardamine hirsuta HOM05D005277 ORTHO05D006319 1.4e-41 172.6 84 95.2
Thhalv10026679m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 1.4e-41 172.6 84 95.2
Thhalv10029049m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 1.4e-41 172.6 90 92.2
Sp6g00620 Schrenkiella parvula HOM05D005277 ORTHO05D006319 1.8e-41 172.2 90 91.1
Aa31LG5G410 Aethionema arabicum HOM05D005277 ORTHO05D006319 1.5e-40 169.1 90 90.0
THA.LOC104817018 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 2.6e-40 168.3 87 89.7
Carub.0006s3664 Capsella rubella HOM05D005277 ORTHO05D006319 5.7e-40 167.2 89 88.8
AL6G52850 Arabidopsis lyrata HOM05D005277 ORTHO05D006319 4.8e-39 164.1 87 88.5
THA.LOC104801449 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 4.8e-39 164.1 91 85.7
C03p39140 Brassica napus HOM05D005277 ORTHO05D006319 4.1e-38 161.0 75 96.0
AT4G00585 Arabidopsis thaliana HOM05D005277 ORTHO05D006319 1.5e-37 159.1 87 86.2
FAN03G2608 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.6e-37 158.3 79 88.6
FAN01G0371 Fragaria x ananassa HOM05D005277 ORTHO05D006319 3.8e-36 154.5 86 86.0
FAN06G3712 Fragaria x ananassa HOM05D005277 ORTHO05D006319 3.8e-36 154.5 86 86.0
FAN06G3877 Fragaria x ananassa HOM05D005277 ORTHO05D006319 3.8e-36 154.5 86 86.0
RcHm_v2.0_Chr1g0353371 Rosa chinensis HOM05D005277 ORTHO05D006319 1.9e-35 152.1 84 85.7
Gohir.A07G143600 Gossypium hirsutum HOM05D005277 ORTHO05D006319 3.2e-35 151.4 81 85.2
Potri.002G155800 Populus trichocarpa HOM05D005277 ORTHO05D006319 3.2e-35 151.4 86 81.4
arahy.Tifrunner.gnm1.ann1.A7XXX8 Arachis hypogaea HOM05D005277 ORTHO05D006319 5.5e-35 150.6 90 77.8
arahy.Tifrunner.gnm1.ann1.I9WHAY Arachis hypogaea HOM05D005277 ORTHO05D006319 5.5e-35 150.6 90 77.8
Potri.014G079800 Populus trichocarpa HOM05D005277 ORTHO05D006319 5.5e-35 150.6 86 81.4
Gohir.D07G149400 Gossypium hirsutum HOM05D005277 ORTHO05D006319 9.4e-35 149.8 81 84.0
Gorai.001G170800 Gossypium raimondii HOM05D005277 ORTHO05D006319 9.4e-35 149.8 81 84.0
Gohir.A08G129800 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.2e-34 149.4 78 85.9
Manes.05G038000 Manihot esculenta HOM05D005277 ORTHO05D006319 1.6e-34 149.1 78 87.2
Manes.01G260200 Manihot esculenta HOM05D005277 ORTHO05D006319 2.1e-34 148.7 78 87.2
Duzib133G1303 Durio zibethinus HOM05D005277 ORTHO05D006319 3.6e-34 147.9 83 80.7
MD01G1052300 Malus domestica HOM05D005277 ORTHO05D006319 3.6e-34 147.9 84 83.3
Oeu021782.1 Olea europaea HOM05D005277 ORTHO05D006319 3.6e-34 147.9 77 85.7
Actinidia32868 Actinidia chinensis HOM05D005277 ORTHO05D006319 4.7e-34 147.5 86 76.7
Actinidia34103 Actinidia chinensis HOM05D005277 ORTHO05D006319 4.7e-34 147.5 86 76.7
Duzib138G0488 Durio zibethinus HOM05D005277 ORTHO05D006319 4.7e-34 147.5 83 80.7
Lalb_Chr01g0021101 Lupinus albus HOM05D005277 ORTHO05D006319 6.1e-34 147.1 82 80.5
Os09g0560300 Oryza sativa ssp. japonica HOM05D005277 ORTHO05D006319 6.1e-34 147.1 77 84.4
Phvul.008G068800 Phaseolus vulgaris HOM05D005277 ORTHO05D006319 6.1e-34 147.1 82 81.7
Thecc.01G365200 Theobroma cacao HOM05D005277 ORTHO05D006319 6.1e-34 147.1 82 82.9
Lsat_1_v5_gn_8_8281 Lactuca sativa HOM05D005277 ORTHO05D006319 1.0e-33 146.4 87 77.0
Prupe.2G159900 Prunus persica HOM05D005277 ORTHO05D006319 1.0e-33 146.4 83 83.1
EL10Ac1g00522 Beta vulgaris HOM05D005277 ORTHO05D006319 1.4e-33 146.0 77 80.5
Gorai.004G156900 Gossypium raimondii HOM05D005277 ORTHO05D006319 1.4e-33 146.0 80 83.8
Nn1g01427 Nelumbo nucifera HOM05D005277 ORTHO05D006319 1.4e-33 146.0 83 79.5
Cfa003961 Carpinus fangiana HOM05D005277 ORTHO05D006319 1.8e-33 145.6 77 84.4
Nitab4.5_0000716g0150 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.8e-33 145.6 78 79.5
Nitab4.5_0003365g0020 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.8e-33 145.6 78 79.5
Peaxi162Scf00915g00031 Petunia axillaris HOM05D005277 ORTHO05D006319 1.8e-33 145.6 78 80.8
HanXRQChr08g0209231 Helianthus annuus HOM05D005277 ORTHO05D006319 2.3e-33 145.2 79 79.7
Sed0005058 Sechium edule HOM05D005277 ORTHO05D006319 2.3e-33 145.2 77 83.1
GSVIVG01026823001 Vitis vinifera HOM05D005277 ORTHO05D006319 2.3e-33 145.2 82 79.3
AUR62004311 Chenopodium quinoa HOM05D005277 ORTHO05D006319 3.0e-33 144.8 80 80.0
ClCG11G004150 Citrullus lanatus HOM05D005277 ORTHO05D006319 3.0e-33 144.8 82 81.7
Hma1.2p1_2482F.1_g323010 Hydrangea macrophylla HOM05D005277 ORTHO05D006319 3.0e-33 144.8 88 76.1
Lj1g0008169 Lotus japonicus HOM05D005277 ORTHO05D006319 3.0e-33 144.8 88 78.4
Lalb_Chr19g0127071 Lupinus albus HOM05D005277 ORTHO05D006319 3.0e-33 144.8 86 81.4
CSS0040378 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 5.2e-33 144.1 87 74.7
CiPaw.02G027600 Carya illinoinensis HOM05D005277 ORTHO05D006319 5.2e-33 144.1 77 83.1
CDE06G0676 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 5.2e-33 144.1 74 83.8
Migut.F00352 Erythranthe guttata HOM05D005277 ORTHO05D006319 5.2e-33 144.1 81 79.0
Glyma.18G229200 Glycine max HOM05D005277 ORTHO05D006319 5.2e-33 144.1 69 88.4
Peaxi162Scf01969g00020 Petunia axillaris HOM05D005277 ORTHO05D006319 5.2e-33 144.1 80 78.8
Sc23g0003110 Simmondsia chinensis HOM05D005277 ORTHO05D006319 5.2e-33 144.1 81 80.2
MELO3C023322.2 Cucumis melo HOM05D005277 ORTHO05D006319 6.7e-33 143.7 82 79.3
Glyma.09G263000 Glycine max HOM05D005277 ORTHO05D006319 6.7e-33 143.7 69 88.4
PGR042G3267 Punica granatum HOM05D005277 ORTHO05D006319 6.7e-33 143.7 81 77.8
Zm00001eb104680 Zea mays HOM05D005277 ORTHO05D006319 8.8e-33 143.3 78 83.3
COL.COLO4_12662 Corchorus olitorius HOM05D005277 ORTHO05D006319 1.1e-32 142.9 83 80.7
CsaV3_2G015020 Cucumis sativus L. HOM05D005277 ORTHO05D006319 1.1e-32 142.9 82 79.3
CDE05G2617 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 1.5e-32 142.5 80 78.8
ECA233G3829 Erigeron canadensis HOM05D005277 ORTHO05D006319 1.5e-32 142.5 81 77.8
Solyc03g025910.3 Solanum lycopersicum HOM05D005277 ORTHO05D006319 2.0e-32 142.1 78 78.2
Sopen03g004720 Solanum pennellii HOM05D005277 ORTHO05D006319 2.0e-32 142.1 78 78.2
PGSC0003DMG400014288 Solanum tuberosum HOM05D005277 ORTHO05D006319 2.0e-32 142.1 78 78.2
HanXRQChr02g0054711 Helianthus annuus HOM05D005277 ORTHO05D006319 2.6e-32 141.7 82 78.0
Hund16947 Selenicereus undatus HOM05D005277 ORTHO05D006319 2.6e-32 141.7 81 77.8
AUR62022763 Chenopodium quinoa HOM05D005277 ORTHO05D006319 3.3e-32 141.4 80 78.8
Sed0006100 Sechium edule HOM05D005277 ORTHO05D006319 3.3e-32 141.4 84 77.4
TWI59G0525 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 3.3e-32 141.4 78 79.5
Aqoxy7G00369 Aquilegia oxysepala HOM05D005277 ORTHO05D006319 4.4e-32 141.0 79 79.7
Ciclev10023111m.g Citrus clementina HOM05D005277 ORTHO05D006319 4.4e-32 141.0 84 79.8
Gohir.D08G151200 Gossypium hirsutum HOM05D005277 ORTHO05D006319 5.7e-32 140.6 78 80.8
TWI23G0263 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 5.7e-32 140.6 87 74.7
MBI07_g12793_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 7.4e-32 140.2 78 79.5
CiPaw.01G056300 Carya illinoinensis HOM05D005277 ORTHO05D006319 9.7e-32 139.8 84 77.4
Medtr7g076630 Medicago truncatula HOM05D005277 ORTHO05D006319 1.3e-31 139.4 82 76.8
HPP92_016701 Vanilla planifolia HOM05D005277 ORTHO05D006319 1.3e-31 139.4 87 73.6
PSO782G2674 Papaver somniferum HOM05D005277 ORTHO05D006319 1.7e-31 139.0 88 75.0
Nitab4.5_0000080g0040 Nicotiana tabacum HOM05D005277 ORTHO05D006319 4.8e-31 137.5 79 77.2
TPR.G37794 Trifolium pratense HOM05D005277 ORTHO05D006319 4.8e-31 137.5 88 75.0
CANSAT56G2015 Cannabis sativa HOM05D005277 ORTHO05D006319 6.3e-31 137.1 86 77.9
Psat3g111720 Pisum sativum HOM05D005277 ORTHO05D006319 1.4e-30 136.0 86 75.6
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 3.1e-30 134.8 80 76.2
vmacro06693 Vaccinium macrocarpon HOM05D005277 ORTHO05D006319 4.1e-30 134.4 83 72.3
Ca_07884_v3 Cicer arietinum L. HOM05D005277 ORTHO05D006319 1.2e-29 132.9 82 75.6
Cc00_g02540 Coffea canephora HOM05D005277 ORTHO05D006319 2.0e-29 132.1 70 80.0
DCAR_018191 Daucus carota HOM05D005277 ORTHO05D006319 1.0e-28 129.8 75 70.7
SalBow2G0266 Salvia bowleyana HOM05D005277 ORTHO05D006319 1.3e-28 129.4 96 62.5
GSVIVG01010541001 Vitis vinifera HOM05D005277 ORTHO05D006319 1.6e-26 122.5 61 83.6
Cc02_g03110 Coffea canephora HOM05D005277 ORTHO05D006319 2.1e-26 122.1 61 83.6
BraA09t35720Z Brassica rapa HOM05D005277 ORTHO05D006319 8.0e-26 120.2 56 100.0
C09p00490 Brassica napus HOM05D005277 ORTHO05D006319 2.8e-23 111.7 55 98.2
BcaNung05359 Brassica carinata HOM05D005277 ORTHO05D006319 1.4e-22 109.4 56 94.6
Rhsim03G0179700 Rhododendron simsii HOM05D005277 ORTHO05D006319 1.8e-22 109.0 153 41.8
BolC9t52983H Brassica oleracea HOM05D005277 ORTHO05D006319 4.1e-22 107.8 52 96.2
Pp3c7_13700 Physcomitrium patens HOM05D005277 ORTHO05D006319 7.0e-22 107.1 80 62.5
SMO203G0011 Selaginella moellendorffii HOM05D005277 ORTHO05D006319 2.7e-21 105.1 69 62.3
Ah.05g176400 Amaranthus hybridus HOM05D005277 ORTHO05D006319 4.5e-21 104.4 57 80.7
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 4.5e-21 104.4 63 82.5
RcHm_v2.0_Chr0c39g0503241 Rosa chinensis HOM05D005277 ORTHO05D006319 5.9e-21 104.0 56 85.7
RcHm_v2.0_Chr1g0353201 Rosa chinensis HOM05D005277 ORTHO05D006319 5.9e-21 104.0 56 85.7
Hund27308 Selenicereus undatus HOM05D005277 ORTHO05D006319 5.9e-21 104.0 62 79.0
RcHm_v2.0_Chr1g0353351 Rosa chinensis HOM05D005277 ORTHO05D006319 1.3e-20 102.8 62 82.3
Sp7g35520 Schrenkiella parvula HOM05D002845 ORTHO05D006319 1.3e-20 102.8 60 86.7
Mapoly0023s0078 Marchantia polymorpha HOM05D005277 ORTHO05D006319 2.9e-20 101.7 80 63.8
Zm00001eb320330 Zea mays HOM05D005277 ORTHO05D006319 1.5e-19 99.4 58 81.0
QL08p049830 Quercus lobata HOM05D005277 ORTHO05D006319 1.9e-19 99.0 55 83.6
Cpa.g.c32742 Carica papaya HOM05D005277 ORTHO05D006319 1.2e-18 96.3 61 77.0
Haze_15461 Corylus avellana HOM05D005277 ORTHO05D006319 1.2e-18 96.3 56 80.4
Sabra14G0058000 Salix brachista HOM05D005277 ORTHO05D006319 1.2e-18 96.3 63 76.2
SHI13469 Sapria himalayana HOM05D005277 ORTHO05D006319 3.6e-18 94.7 55 80.0
MBI06_g06483_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 8.0e-18 93.6 47 85.1
Atru.chr5.442 Acer truncatum HOM05D005277 ORTHO05D006319 1.0e-17 93.2 55 78.2
unitig_0.g2484 Utricularia gibba HOM05D002154 ORTHO05D002362 1.0e-17 93.2 51 78.4
HPP92_028083 Vanilla planifolia HOM05D005277 ORTHO05D006319 4.0e-17 91.3 57 73.7
Nitab4.5_0008315g0010 Nicotiana tabacum HOM05D005277 ORTHO05D006319 6.8e-17 90.5 57 71.9
ATR0721G079 Amborella trichopoda HOM05D005277 ORTHO05D006319 1.3e-15 86.3 60 66.7
CSS0022794 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 2.2e-15 85.5 62 66.1
ATR0763G077 Amborella trichopoda HOM05D005277 ORTHO05D006319 2.8e-15 85.1 59 67.8
ATR0174G019 Amborella trichopoda HOM05D005277 ORTHO05D006319 2.4e-14 82.0 59 66.1
FAN10G1490 Fragaria x ananassa HOM05D005277 ORTHO05D006319 4.1e-14 81.3 39 89.7
CSS0038928 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 1.0e-12 76.6 64 57.8
PRCOL_00003506 Prasinoderma coloniale HOM05D005277 ORTHO05D006319 1.7e-12 75.9 61 54.1
AagrBONN_evm.TU.Sc2ySwM_369.4 Anthoceros agrestis HOM05D005277 ORTHO05D006319 3.3e-11 71.6 74 50.0
MCO13G435 Micromonas commoda HOM05D005277 ORTHO05D006319 2.1e-10 68.9 70 48.6


User provided reference genes

Program Settings