Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 0.0e+00 1439.5 737 100.0
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 0.0e+00 1330.5 758 91.0
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 0.0e+00 1287.3 741 89.3
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 0.0e+00 1285.8 741 88.5
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 0.0e+00 1283.1 741 88.4
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 0.0e+00 1282.3 750 89.7
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 0.0e+00 1280.8 741 88.1
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 0.0e+00 1279.6 741 88.1
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 0.0e+00 1278.1 753 89.4
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 0.0e+00 1268.4 742 88.3
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 0.0e+00 1266.9 741 88.3
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 0.0e+00 1226.8 742 86.3
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 0.0e+00 1226.5 742 86.9
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 0.0e+00 1197.6 741 83.7
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 0.0e+00 1141.7 744 79.8
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 1.3e-310 1069.3 745 77.6
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 3.5e-295 1018.1 621 86.8
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 3.0e-291 1005.0 743 71.2
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 1.3e-289 999.6 725 70.8
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 1.3e-289 999.6 743 70.7
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 1.0e-286 989.9 709 71.9
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 4.2e-285 984.6 771 68.0
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 2.8e-284 981.9 691 74.0
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 6.1e-284 980.7 743 69.6
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 1.8e-283 979.2 740 68.0
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 1.8e-283 979.2 710 70.1
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 5.2e-283 977.6 718 69.6
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 7.5e-282 973.8 734 69.1
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 4.3e-277 958.0 740 67.4
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 8.9e-275 950.3 713 69.7
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 2.0e-274 949.1 741 67.2
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 2.2e-273 945.7 734 67.3
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 1.4e-272 943.0 735 67.8
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 4.6e-271 937.9 714 67.9
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 6.0e-271 937.6 714 67.8
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 3.9e-270 934.9 728 67.6
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 8.6e-270 933.7 727 67.7
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 8.6e-270 933.7 730 66.6
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 7.3e-269 930.6 747 65.7
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.1e-268 929.1 714 66.9
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.8e-268 928.7 726 67.2
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.8e-268 928.7 714 67.1
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.4e-267 926.4 715 67.6
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 1.8e-267 926.0 747 65.3
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 2.3e-267 925.6 746 65.4
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 1.5e-266 922.9 735 65.3
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.0e-266 922.5 712 66.7
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 3.4e-266 921.8 716 66.2
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 1.4e-264 916.4 730 65.2
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 7.8e-263 910.6 726 66.1
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 1.3e-262 909.8 749 64.9
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 3.9e-262 908.3 729 66.5
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 5.0e-262 907.9 720 65.0
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 1.1e-261 906.7 730 64.9
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 7.3e-261 904.0 748 64.4
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 2.1e-260 902.5 762 64.2
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 1.8e-259 899.4 715 65.9
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 3.1e-259 898.7 704 66.8
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 5.2e-259 897.9 663 70.6
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 1.2e-258 896.7 706 65.4
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 1.5e-258 896.3 718 65.7
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 1.5e-258 896.3 671 70.5
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 3.4e-258 895.2 737 63.6
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 5.8e-258 894.4 709 65.3
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 1.6e-255 886.3 736 63.2
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 1.3e-254 883.2 727 63.5
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 1.7e-254 882.9 806 59.9
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 1.7e-254 882.9 713 64.7
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 2.3e-254 882.5 725 64.3
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 2.3e-254 882.5 727 63.8
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 5.1e-254 881.3 712 64.6
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 6.6e-254 880.9 738 63.1
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 8.6e-254 880.6 726 62.8
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 1.1e-253 880.2 726 62.8
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 1.9e-253 879.4 726 63.5
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 3.3e-253 878.6 702 65.5
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 5.6e-253 877.9 732 62.2
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 7.3e-253 877.5 722 63.7
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 2.1e-252 875.9 728 64.0
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 1.4e-251 873.2 720 64.9
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 1.8e-251 872.8 726 62.9
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 1.8e-251 872.8 731 62.8
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 3.1e-251 872.1 714 64.3
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 4.0e-251 871.7 731 62.8
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 1.5e-250 869.8 738 62.1
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 7.6e-250 867.5 731 62.4
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 1.1e-248 863.6 757 61.2
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 5.4e-248 861.3 729 63.2
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 5.4e-248 861.3 730 63.3
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 7.8e-247 857.4 727 63.7
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 3.0e-246 855.5 682 65.5
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 4.3e-245 851.7 731 62.4
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 7.3e-245 850.9 737 60.8
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 1.2e-244 850.1 713 62.7
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 1.2e-244 850.1 703 63.4
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 3.1e-243 845.5 711 62.0
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 6.9e-243 844.3 689 63.4
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 1.5e-242 843.2 740 60.0
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 2.6e-242 842.4 714 61.9
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 6.4e-241 837.8 704 62.5
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 1.0e-238 830.5 723 60.2
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 5.1e-238 828.2 718 61.1
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 1.9e-237 826.2 713 60.4
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 4.0e-235 818.5 729 59.9
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 4.5e-234 815.1 714 61.8
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 2.2e-233 812.8 649 66.3
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 8.4e-233 810.8 728 59.2
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 6.0e-231 804.7 741 57.5
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 6.0e-231 804.7 681 62.1
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 1.9e-229 799.7 734 59.1
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 1.9e-229 799.7 726 58.4
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 1.8e-227 793.1 719 58.8
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.3e-225 786.9 731 57.3
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 3.5e-223 778.9 711 59.4
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 6.5e-217 758.1 585 68.9
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 1.1e-213 747.3 716 56.6
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 1.5e-210 736.9 707 56.4
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 5.5e-208 728.4 619 64.1
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 3.7e-204 715.7 659 59.6
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 3.1e-203 712.6 726 52.8
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 7.0e-195 684.9 713 54.0
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.2e-194 684.1 563 65.0
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.3e-193 680.6 606 60.2
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 4.5e-186 655.6 720 50.6
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 7.7e-186 654.8 562 62.3
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 1.4e-179 634.0 579 59.4
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 7.0e-179 631.7 670 52.5
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 4.7e-175 619.0 500 64.0
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 4.5e-170 602.4 705 50.4
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 3.2e-155 553.1 714 45.7
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 2.1e-135 487.3 881 37.9
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 3.6e-135 486.5 606 48.2
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 6.8e-134 482.3 342 70.5
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 6.6e-129 465.7 328 75.3
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 1.3e-116 424.9 447 54.8
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.4e-102 377.5 258 73.3
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.3e-97 360.9 257 71.2
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 1.5e-88 331.6 291 62.2
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 2.0e-85 321.2 379 48.0
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 2.2e-71 274.6 365 49.0
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 2.6e-69 267.7 503 36.0
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 1.2e-66 258.8 333 49.5
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 4.0e-57 227.3 547 33.6
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 8.3e-47 193.0 123 74.0
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 7.0e-46 189.9 187 54.0
C05p36300 Brassica napus HOM05D004359 ORTHO05D005052 1.3e-44 185.7 136 71.3
BcaC05g27642 Brassica carinata HOM05D004359 ORTHO05D000212 8.9e-41 172.9 130 70.0
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 2.9e-39 167.9 123 71.5
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 5.6e-35 153.7 139 59.7
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 1.3e-28 132.5 175 45.1
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 1.3e-28 132.5 177 42.4
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 2.4e-22 111.7 322 31.4
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 2.9e-15 88.2 122 45.1
Sed0019342 Sechium edule HOM05D004359 ORTHO05D050299 2.9e-15 88.2 63 68.3
RcHm_v2.0_Chr4g0393591 Rosa chinensis HOM05D004359 ORTHO05D005052 8.4e-15 86.7 52 75.0
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.7e-13 81.6 84 50.0
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.7e-13 81.6 84 50.0
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 1.1e-11 76.3 82 52.4
Glyma.19G081300 Glycine max HOM05D004359 ORTHO05D005052 1.3e-10 72.8 83 43.4
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 2.8e-10 71.6 58 65.5
HPP92_015629 Vanilla planifolia HOM05D004359 ORTHO05D005052 2.8e-10 71.6 87 44.8
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 2.2e-07 62.0 37 81.1


User provided reference genes

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