Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p36820 Brassica napus HOM05D002401 ORTHO05D007109 1.6e-48 195.7 94 100.0
BcaC07g36894 Brassica carinata HOM05D002401 ORTHO05D007109 1.7e-42 175.6 89 92.1
BolC8t46940H Brassica oleracea HOM05D002401 ORTHO05D007109 1.2e-38 162.9 97 83.5
C08p01320 Brassica napus HOM05D002401 ORTHO05D007109 8.4e-37 156.8 89 84.3
C08p01270 Brassica napus HOM05D002401 ORTHO05D007109 2.3e-34 148.7 124 61.3
Sp4g14620 Schrenkiella parvula HOM05D002401 ORTHO05D007109 1.5e-33 146.0 74 89.2
BcaC07g36899 Brassica carinata HOM05D002401 ORTHO05D007109 3.3e-33 144.8 91 75.8
BolC8t46934H Brassica oleracea HOM05D002401 ORTHO05D007109 1.3e-32 142.9 91 75.8
Thhalv10009297m.g Eutrema salsugineum HOM05D002401 ORTHO05D007109 2.1e-32 142.1 72 90.3
Sp1g03480 Schrenkiella parvula HOM05D002401 ORTHO05D007109 2.8e-32 141.7 74 85.1
AL1G14330 Arabidopsis lyrata HOM05D002401 ORTHO05D007109 1.4e-31 139.4 72 87.5
AT1G04640 Arabidopsis thaliana HOM05D002401 ORTHO05D007109 1.4e-31 139.4 72 87.5
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 1.8e-31 139.0 72 86.1
CARHR004000 Cardamine hirsuta HOM05D002401 ORTHO05D007109 1.8e-31 139.0 72 87.5
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 2.4e-31 138.7 72 84.7
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 4.0e-31 137.9 72 84.7
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 6.9e-31 137.1 72 84.7
Aa31LG1G20230 Aethionema arabicum HOM05D002401 ORTHO05D007109 1.2e-30 136.3 72 83.3
Carub.0001s0388 Capsella rubella HOM05D002401 ORTHO05D007109 1.2e-30 136.3 72 84.7
Prupe.6G017700 Prunus persica HOM05D002401 ORTHO05D007109 1.5e-30 136.0 74 82.4
Dinv08058 Davidia involucrata HOM05D002401 ORTHO05D007109 2.0e-30 135.6 74 81.1
Lj1P433T22 Lonicera japonica HOM05D002401 ORTHO05D007109 2.6e-30 135.2 74 79.7
Lj1P433T23 Lonicera japonica HOM05D002401 ORTHO05D007109 2.6e-30 135.2 74 79.7
Gohir.A13G215000 Gossypium hirsutum HOM05D002401 ORTHO05D007109 3.4e-30 134.8 74 81.1
Lj1P432T20 Lonicera japonica HOM05D002401 ORTHO05D007109 3.4e-30 134.8 74 78.4
CiPaw.13G168200 Carya illinoinensis HOM05D002401 ORTHO05D007109 5.8e-30 134.0 74 79.7
Gohir.D13G218700 Gossypium hirsutum HOM05D002401 ORTHO05D007109 7.6e-30 133.7 74 81.1
Gorai.013G249500 Gossypium raimondii HOM05D002401 ORTHO05D007109 7.6e-30 133.7 74 81.1
Ah.04g161710 Amaranthus hybridus HOM05D002401 ORTHO05D007109 9.9e-30 133.3 74 75.7
Ciclev10016532m.g Citrus clementina HOM05D002401 ORTHO05D007109 9.9e-30 133.3 74 79.7
COL.COLO4_10387 Corchorus olitorius HOM05D002401 ORTHO05D007109 9.9e-30 133.3 74 81.1
Actinidia39375 Actinidia chinensis HOM05D002401 ORTHO05D007109 1.3e-29 132.9 74 78.4
FvH4_3g43830 Fragaria vesca HOM05D002401 ORTHO05D007109 1.3e-29 132.9 74 79.7
FAN11G0540 Fragaria x ananassa HOM05D002401 ORTHO05D007109 1.3e-29 132.9 74 79.7
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 1.3e-29 132.9 74 79.7
QL01p009075 Quercus lobata HOM05D002401 ORTHO05D007109 1.7e-29 132.5 74 82.4
RcHm_v2.0_Chr5g0079311 Rosa chinensis HOM05D002401 ORTHO05D007109 1.7e-29 132.5 74 78.4
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 2.2e-29 132.1 74 77.0
Lsat_1_v5_gn_6_49801 Lactuca sativa HOM05D004119 ORTHO05D004797 3.8e-29 131.3 74 77.0
vmacro21025 Vaccinium macrocarpon HOM05D002401 ORTHO05D007109 3.8e-29 131.3 74 75.7
CSS0016162 Camellia sinensis var. sinensis HOM05D002401 ORTHO05D007109 4.9e-29 131.0 72 79.2
CSS0023444 Camellia sinensis var. sinensis HOM05D002401 ORTHO05D007109 4.9e-29 131.0 72 79.2
CSS0035740 Camellia sinensis var. sinensis HOM05D002401 ORTHO05D007109 4.9e-29 131.0 72 79.2
CSS0040450 Camellia sinensis var. sinensis HOM05D002401 ORTHO05D007109 4.9e-29 131.0 72 79.2
AUR62019226 Chenopodium quinoa HOM05D002401 ORTHO05D007109 4.9e-29 131.0 74 77.0
HanXRQChr02g0056731 Helianthus annuus HOM05D002401 ORTHO05D007109 6.4e-29 130.6 74 75.7
Atru.chr3.2466 Acer truncatum HOM05D002401 ORTHO05D007109 8.4e-29 130.2 74 79.7
ECA233G1816 Erigeron canadensis HOM05D002401 ORTHO05D007109 8.4e-29 130.2 74 75.7
FAN21G0229 Fragaria x ananassa HOM05D004119 ORTHO05D004797 8.4e-29 130.2 74 78.4
FAN25G3049 Fragaria x ananassa HOM05D002401 ORTHO05D007109 8.4e-29 130.2 74 78.4
THA.LOC104801054 Tarenaya hassleriana HOM05D002401 ORTHO05D007109 1.1e-28 129.8 74 79.7
Thecc.09G219400 Theobroma cacao HOM05D002401 ORTHO05D007109 1.1e-28 129.8 74 79.7
Nitab4.5_0000140g0030 Nicotiana tabacum HOM05D002401 ORTHO05D007109 2.5e-28 128.6 75 74.7
AUR62024019 Chenopodium quinoa HOM05D002401 ORTHO05D007109 5.5e-28 127.5 74 73.0
Duzib168G1104 Durio zibethinus HOM05D002401 ORTHO05D007109 5.5e-28 127.5 74 77.0
Migut.N02287 Erythranthe guttata HOM05D002401 ORTHO05D007109 5.5e-28 127.5 74 73.0
Potri.001G014000 Populus trichocarpa HOM05D002401 ORTHO05D007109 7.1e-28 127.1 74 75.7
CAN.G1058.20 Capsicum annuum HOM05D002401 ORTHO05D007109 9.3e-28 126.7 74 74.3
Nn6g34874 Nelumbo nucifera HOM05D002401 ORTHO05D007109 9.3e-28 126.7 74 74.3
DCAR_002030 Daucus carota HOM05D000038 ORTHO05D000143 1.2e-27 126.3 74 75.7
Hund21661 Selenicereus undatus HOM05D002401 ORTHO05D007109 1.2e-27 126.3 73 74.0
PSO170G3695 Papaver somniferum HOM05D002401 ORTHO05D007109 1.6e-27 125.9 74 73.0
MSTRG.225 Avicennia marina HOM05D002401 ORTHO05D007109 2.1e-27 125.6 74 71.6
Nitab4.5_0009644g0010 Nicotiana tabacum HOM05D002401 ORTHO05D007109 2.1e-27 125.6 74 73.0
TAR636G2973 Trochodendron aralioides HOM05D002401 ORTHO05D007109 2.1e-27 125.6 74 73.0
arahy.Tifrunner.gnm1.ann1.Y60BUA Arachis hypogaea HOM05D002401 ORTHO05D007109 2.7e-27 125.2 74 73.0
PGR119G2292 Punica granatum HOM05D002401 ORTHO05D007109 3.5e-27 124.8 74 74.3
Sed0000230 Sechium edule HOM05D002401 ORTHO05D007109 3.5e-27 124.8 74 70.3
Sopen02g022370 Solanum pennellii HOM05D002401 ORTHO05D007109 3.5e-27 124.8 74 73.0
PGSC0003DMG400010797 Solanum tuberosum HOM05D002401 ORTHO05D007109 3.5e-27 124.8 74 73.0
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 4.6e-27 124.4 74 73.0
Eucgr.B02601 Eucalyptus grandis HOM05D002401 ORTHO05D007109 4.6e-27 124.4 74 71.6
ClCG03G013630 Citrullus lanatus HOM05D002401 ORTHO05D007109 6.0e-27 124.0 74 71.6
MELO3C015679.2 Cucumis melo HOM05D002401 ORTHO05D007109 6.0e-27 124.0 74 70.3
PGSC0003DMG400031756 Solanum tuberosum HOM05D002401 ORTHO05D007109 6.0e-27 124.0 74 73.0
arahy.Tifrunner.gnm1.ann1.EBKF2Y Arachis hypogaea HOM05D002401 ORTHO05D007109 7.9e-27 123.6 74 71.6
arahy.Tifrunner.gnm1.ann1.IPP45T Arachis hypogaea HOM05D002401 ORTHO05D007109 7.9e-27 123.6 74 71.6
MD11G1020800 Malus domestica HOM05D002401 ORTHO05D007109 7.9e-27 123.6 74 74.3
Phvul.007G046000 Phaseolus vulgaris HOM05D002401 ORTHO05D007109 7.9e-27 123.6 74 71.6
Glyma.20G134600 Glycine max HOM05D002401 ORTHO05D007109 1.0e-26 123.2 74 71.6
MBI19_g15086_MAGBIO Magnolia biondii HOM05D002401 ORTHO05D007109 1.0e-26 123.2 74 73.0
PSO675G9034 Papaver somniferum HOM05D002401 ORTHO05D007109 1.0e-26 123.2 74 71.6
SEGI_03744 Sequoiadendron giganteum HOM05D002401 ORTHO05D007109 1.0e-26 123.2 74 70.3
GSVIVG01025351001 Vitis vinifera HOM05D002401 ORTHO05D007109 1.0e-26 123.2 63 84.1
Lalb_Chr21g0308061 Lupinus albus HOM05D002401 ORTHO05D007109 1.3e-26 122.9 74 70.3
CsaV3_1G042440 Cucumis sativus L. HOM05D002401 ORTHO05D007109 1.8e-26 122.5 74 68.9
Peaxi162Scf00062g00142 Petunia axillaris HOM05D002401 ORTHO05D007109 1.8e-26 122.5 74 71.6
PSO017G5010 Papaver somniferum HOM05D002401 ORTHO05D007109 2.3e-26 122.1 74 71.6
PGR119G1645 Punica granatum HOM05D002401 ORTHO05D007109 2.3e-26 122.1 74 73.0
SalBow2G2702 Salvia bowleyana HOM05D002401 ORTHO05D007109 3.0e-26 121.7 74 70.3
Solyc02g077460.3 Solanum lycopersicum HOM05D002401 ORTHO05D007109 3.0e-26 121.7 74 71.6
Medtr1g106190 Medicago truncatula HOM05D002401 ORTHO05D007109 3.9e-26 121.3 74 70.3
VMungo0720G0059 Vigna mungo HOM05D002401 ORTHO05D007109 3.9e-26 121.3 74 70.3
Ca_02939_v3 Cicer arietinum L. HOM05D002401 ORTHO05D007109 5.1e-26 120.9 74 70.3
Manes.14G015200 Manihot esculenta HOM05D002401 ORTHO05D007109 5.1e-26 120.9 74 71.6
Psat6g214760 Pisum sativum HOM05D002401 ORTHO05D007109 5.1e-26 120.9 74 70.3
CDE09G0839 Ceratophyllum demersum HOM05D002401 ORTHO05D007109 6.7e-26 120.6 74 67.6
TPR.G21143 Trifolium pratense HOM05D002401 ORTHO05D007109 6.7e-26 120.6 74 68.9
ATR0307G126 Amborella trichopoda HOM05D002401 ORTHO05D007109 8.7e-26 120.2 74 71.6
Oeu007983.1 Olea europaea HOM05D002401 ORTHO05D007109 8.7e-26 120.2 63 79.4
Os03g0321800 Oryza sativa ssp. japonica HOM05D002401 ORTHO05D007109 8.7e-26 120.2 74 64.9
unitig_52.g17159 Utricularia gibba HOM05D002401 ORTHO05D007109 8.7e-26 120.2 74 67.6
SGA_v2.0_scaffold304G47925 Striga asiatica HOM05D002401 ORTHO05D007109 1.5e-25 119.4 74 66.2
SGA_v2.0_scaffold456G51922 Striga asiatica HOM05D002401 ORTHO05D007109 1.5e-25 119.4 74 66.2
HPP92_006661 Vanilla planifolia HOM05D002401 ORTHO05D007109 4.3e-25 117.9 74 67.6
Lj5g0001405 Lotus japonicus HOM05D002401 ORTHO05D007109 1.6e-24 115.9 74 64.9
CSS0015735 Camellia sinensis var. sinensis HOM05D002401 ORTHO05D007109 2.1e-24 115.5 64 78.1
Sc16g0011880 Simmondsia chinensis HOM05D002401 ORTHO05D007109 2.1e-24 115.5 73 67.1
TWI32G0621 Tripterygium wilfordii HOM05D002401 ORTHO05D007109 4.8e-24 114.4 74 68.9
SHI03518 Sapria himalayana HOM05D002401 ORTHO05D007109 6.9e-23 110.5 90 57.8
CSS0046228 Camellia sinensis var. sinensis HOM05D002401 ORTHO05D007109 1.7e-21 105.9 58 79.3
Zm00001eb295550 Zea mays HOM05D002401 ORTHO05D007109 2.2e-21 105.5 76 59.2
Actinidia06316 Actinidia chinensis HOM05D004119 ORTHO05D004797 1.4e-20 102.8 59 74.6
TAR636G3466 Trochodendron aralioides HOM05D002401 ORTHO05D007109 9.3e-20 100.1 59 71.2
Pp3c27_7140 Physcomitrium patens HOM05D002401 ORTHO05D007109 1.2e-19 99.8 74 58.1
Mapoly0010s0076 Marchantia polymorpha HOM05D002401 ORTHO05D007109 3.0e-18 95.1 73 54.8
Cc01_g03820 Coffea canephora HOM05D002401 ORTHO05D007109 4.3e-17 91.3 51 76.5
AagrBONN_evm.TU.Sc2ySwM_362.1505 Anthoceros agrestis HOM05D002401 ORTHO05D007109 7.4e-17 90.5 72 55.6
CBR_g18683 Chara braunii HOM05D002401 ORTHO05D007109 1.6e-16 89.4 74 48.6
MCO04G499 Micromonas commoda HOM05D002401 ORTHO05D007109 8.2e-16 87.0 70 51.4
Solyc04g049460.2 Solanum lycopersicum HOM05D002401 ORTHO05D007109 2.6e-14 82.0 53 67.9
SMO351G0240 Selaginella moellendorffii HOM05D002401 ORTHO05D007109 2.2e-13 79.0 74 41.9
CsaV3_2G007240 Cucumis sativus L. HOM05D008339 ORTHO05D007109 3.8e-13 78.2 74 47.3
SMO146G0125 Selaginella moellendorffii HOM05D002401 ORTHO05D007109 5.0e-13 77.8 72 45.8
Cre01.g010350 Chlamydomonas reinhardtii HOM05D002401 ORTHO05D007109 6.5e-13 77.4 72 45.8
PRCOL_00001966 Prasinoderma coloniale HOM05D002401 ORTHO05D007109 2.2e-08 62.4 92 33.7
Glyma.10G256700 Glycine max HOM05D002401 ORTHO05D007109 2.8e-08 62.0 41 61.0
Pp3c12_18570 Physcomitrium patens HOM05D002401 ORTHO05D006143 3.7e-08 61.6 76 36.8
Mapoly0078s0004 Marchantia polymorpha HOM05D002401 ORTHO05D006143 6.3e-08 60.8 77 35.1
Peaxi162Scf00280g00077 Petunia axillaris HOM05D002401 ORTHO05D006143 1.4e-07 59.7 72 37.5
PGSC0003DMG400016886 Solanum tuberosum HOM05D002401 ORTHO05D006143 1.4e-07 59.7 72 36.1
unitig_52.g16825 Utricularia gibba HOM05D002401 ORTHO05D007109 1.4e-07 59.7 34 76.5
CANSAT56G2411 Cannabis sativa HOM05D002401 ORTHO05D006143 3.1e-07 58.5 73 35.6
CBR_g38019 Chara braunii HOM05D002401 ORTHO05D006143 3.1e-07 58.5 77 32.5
AagrBONN_evm.TU.Sc2ySwM_344.2173 Anthoceros agrestis HOM05D002401 ORTHO05D006143 4.1e-07 58.2 76 34.2
Glyma.04G034800 Glycine max HOM05D002401 ORTHO05D006143 4.1e-07 58.2 70 38.6
Nitab4.5_0009288g0040 Nicotiana tabacum HOM05D002401 ORTHO05D006143 4.1e-07 58.2 72 36.1
CAN.G371.115 Capsicum annuum HOM05D002401 ORTHO05D006143 5.3e-07 57.8 72 36.1
Lalb_Chr02g0157531 Lupinus albus HOM05D002401 ORTHO05D006143 5.3e-07 57.8 70 38.6
Nitab4.5_0000110g0070 Nicotiana tabacum HOM05D002401 ORTHO05D006143 5.3e-07 57.8 72 34.7
VMungo0540G1795 Vigna mungo HOM05D002401 ORTHO05D006143 5.3e-07 57.8 72 36.1
Lsat_1_v5_gn_4_122901 Lactuca sativa HOM05D002401 ORTHO05D006143 6.9e-07 57.4 76 32.9
Phvul.005G120000 Phaseolus vulgaris HOM05D002401 ORTHO05D006143 6.9e-07 57.4 72 36.1
Glyma.18G099900 Glycine max HOM05D002401 ORTHO05D006143 9.1e-07 57.0 70 35.7
Phvul.006G040300 Phaseolus vulgaris HOM05D002401 ORTHO05D006143 9.1e-07 57.0 72 34.7
Sopen04g033330 Solanum pennellii HOM05D002401 ORTHO05D006143 9.1e-07 57.0 72 34.7
TPR.G21549 Trifolium pratense HOM05D002401 ORTHO05D006143 9.1e-07 57.0 70 34.3
Eucgr.H02545 Eucalyptus grandis HOM05D002401 ORTHO05D006143 1.5e-06 56.2 79 34.2
Psat0s2724g0080 Pisum sativum HOM05D002401 ORTHO05D006143 1.5e-06 56.2 72 33.3
Solyc04g079750.4 Solanum lycopersicum HOM05D002401 ORTHO05D006143 1.5e-06 56.2 72 34.7
TWI56G0576 Tripterygium wilfordii HOM05D002401 ORTHO05D006143 1.5e-06 56.2 73 34.2
TPR.G12442 Trifolium pratense HOM05D002401 ORTHO05D006143 2.0e-06 55.8 70 32.9
BcaB03g12674 Brassica carinata HOM05D002401 ORTHO05D006143 2.6e-06 55.5 89 31.5
HanXRQChr05g0141551 Helianthus annuus HOM05D002401 ORTHO05D006143 2.6e-06 55.5 76 32.9
PGR031G0661 Punica granatum HOM05D002401 ORTHO05D006143 2.6e-06 55.5 79 34.2
Sp7g28930 Schrenkiella parvula HOM05D002401 ORTHO05D006143 2.6e-06 55.5 73 32.9
SMO118G0246 Selaginella moellendorffii HOM05D002401 ORTHO05D006143 2.6e-06 55.5 50 38.0
AL7G21020 Arabidopsis lyrata HOM05D002401 ORTHO05D006143 3.4e-06 55.1 73 32.9
arahy.Tifrunner.gnm1.ann1.LC5CIX Arachis hypogaea HOM05D002401 ORTHO05D006143 3.4e-06 55.1 70 35.7
BcaC09g51892 Brassica carinata HOM05D002401 ORTHO05D006143 3.4e-06 55.1 73 32.9
A08p18900 Brassica napus HOM05D002401 ORTHO05D006143 3.4e-06 55.1 73 32.9
C01p07880 Brassica napus HOM05D002401 ORTHO05D006143 3.4e-06 55.1 73 32.9
BolC1t00775H Brassica oleracea HOM05D002401 ORTHO05D006143 3.4e-06 55.1 73 32.9
CARHR238960 Cardamine hirsuta HOM05D002401 ORTHO05D006143 3.4e-06 55.1 73 32.9
Psat5g144200 Pisum sativum HOM05D002401 ORTHO05D006143 3.4e-06 55.1 72 31.9
SGA_v2.0_scaffold14G07044 Striga asiatica HOM05D002401 ORTHO05D006143 3.4e-06 55.1 72 34.7
CiPaw.06G110100 Carya illinoinensis HOM05D002401 ORTHO05D006143 4.5e-06 54.7 72 33.3
Atru.chr13.576 Acer truncatum HOM05D002401 ORTHO05D006143 5.9e-06 54.3 73 31.5
AT4G31050 Arabidopsis thaliana HOM05D002401 ORTHO05D006143 5.9e-06 54.3 73 32.9
A01p07120 Brassica napus HOM05D002401 ORTHO05D006143 5.9e-06 54.3 74 31.1
Gohir.A05G197900 Gossypium hirsutum HOM05D002401 ORTHO05D006143 5.9e-06 54.3 73 31.5
Gohir.D05G200800 Gossypium hirsutum HOM05D002401 ORTHO05D006143 5.9e-06 54.3 73 31.5
Gorai.009G206100 Gossypium raimondii HOM05D002401 ORTHO05D006143 5.9e-06 54.3 73 31.5
SEGI_06323 Sequoiadendron giganteum HOM05D002401 ORTHO05D006143 5.9e-06 54.3 76 31.6
AL1G53870 Arabidopsis lyrata HOM05D002401 ORTHO05D006143 7.7e-06 53.9 72 31.9
CiPaw.16G052500 Carya illinoinensis HOM05D002401 ORTHO05D006143 7.7e-06 53.9 72 33.3
Ca_15531_v3 Cicer arietinum L. HOM05D002401 ORTHO05D006143 7.7e-06 53.9 70 34.3
ClCG05G022050 Citrullus lanatus HOM05D002667 ORTHO05D006143 7.7e-06 53.9 72 33.3
ECA232G3633 Erigeron canadensis HOM05D002401 ORTHO05D006143 7.7e-06 53.9 72 33.3
HanXRQChr09g0268371 Helianthus annuus HOM05D002401 ORTHO05D006143 7.7e-06 53.9 70 34.3
RcHm_v2.0_Chr5g0074221 Rosa chinensis HOM05D002401 ORTHO05D006143 7.7e-06 53.9 72 31.9


User provided reference genes

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